Wall clock time and date at job start Mon Mar 8 2021 06:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46884 * 2 1 4 4 C 1.53003 * 109.46607 * 240.00493 * 2 1 3 5 5 Si 1.86293 * 109.47560 * 120.00656 * 2 1 3 6 6 C 1.86304 * 109.47010 * 299.99776 * 5 2 1 7 7 C 1.86296 * 109.47274 * 180.02562 * 5 2 1 8 8 O 1.63099 * 109.47509 * 59.99421 * 5 2 1 9 9 C 1.42900 * 114.00347 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.47223 * 180.02562 * 9 8 5 11 11 C 1.33142 * 122.54886 * 5.74842 * 10 9 8 12 12 S 1.75819 * 109.88898 * 179.75622 * 11 10 9 13 13 C 1.75850 * 91.13734 * 0.33914 * 12 11 10 14 14 C 1.34433 * 109.55775 * 359.65993 * 13 12 11 15 15 C 1.48566 * 122.74234 * 180.24078 * 14 13 12 16 16 C 1.34431 * 122.74248 * 111.92113 * 15 14 13 17 17 C 1.50696 * 125.22104 * 0.03521 * 16 15 14 18 18 O 1.42905 * 109.46940 * 322.67726 * 17 16 15 19 19 Si 1.86303 * 109.47092 * 202.68226 * 17 16 15 20 20 H 1.48499 * 109.47091 * 59.99726 * 19 17 16 21 21 H 1.48498 * 109.47014 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46912 * 299.99802 * 19 17 16 23 23 S 1.75856 * 109.55845 * 179.97438 * 16 15 14 24 24 C 1.75818 * 91.13609 * 0.28497 * 23 16 15 25 25 C 1.33139 * 109.89157 * 359.83890 * 24 23 16 26 26 H 1.09003 * 109.46722 * 299.99597 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99548 * 1 2 3 28 28 H 1.09004 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46856 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47485 * 300.00383 * 3 2 1 31 31 H 1.09003 * 109.47112 * 60.00642 * 3 2 1 32 32 H 1.08997 * 109.47538 * 299.99731 * 4 2 1 33 33 H 1.09001 * 109.47288 * 59.99907 * 4 2 1 34 34 H 1.09006 * 109.46720 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47270 * 179.97438 * 6 5 2 36 36 H 1.09003 * 109.47153 * 300.00355 * 6 5 2 37 37 H 1.09003 * 109.47216 * 59.99546 * 6 5 2 38 38 H 1.09003 * 109.46818 * 299.99631 * 7 5 2 39 39 H 1.08997 * 109.47141 * 59.99987 * 7 5 2 40 40 H 1.09001 * 109.47086 * 179.97438 * 7 5 2 41 41 H 1.09001 * 109.46967 * 60.00512 * 9 8 5 42 42 H 1.09001 * 109.46956 * 300.00422 * 9 8 5 43 43 H 1.08000 * 125.05314 * 0.03415 * 11 10 9 44 44 H 1.07997 * 125.22275 * 179.97438 * 13 12 11 45 45 H 1.08998 * 109.47444 * 82.67991 * 17 16 15 46 46 H 0.96699 * 114.00392 * 299.29370 * 18 17 16 47 47 H 1.08001 * 125.05715 * 179.87481 * 24 23 16 48 48 H 1.07998 * 122.54905 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1511 -0.8783 1.5209 6 6 1.5302 -0.0002 3.0422 7 6 4.0141 -0.8776 1.5213 8 8 1.6074 -2.4160 1.5210 9 6 2.0287 -3.1815 2.6517 10 6 1.4724 -4.5783 2.5483 11 6 0.8048 -5.0060 1.4787 12 16 0.3159 -6.6792 1.7085 13 6 1.0579 -6.7138 3.3024 14 6 1.6171 -5.5197 3.5645 15 6 2.3307 -5.2280 4.8345 16 6 3.6575 -5.0195 4.8916 17 6 4.5935 -5.0485 3.7109 18 8 4.1854 -6.0753 2.8047 19 14 6.3267 -5.3938 4.3007 20 1 6.3616 -6.7073 4.9926 21 1 7.2489 -5.4230 3.1372 22 1 6.7507 -4.3268 5.2425 23 16 4.1331 -4.7059 6.5554 24 6 2.4715 -4.8863 7.1011 25 6 1.6808 -5.1551 6.0643 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 -1.7488 -1.2495 33 1 1.6765 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2496 35 1 1.8932 -0.5144 3.9322 36 1 1.8935 1.0275 3.0423 37 1 0.4402 -0.0002 3.0423 38 1 4.3777 -1.3912 0.6312 39 1 4.3770 0.1502 1.5216 40 1 4.3775 -1.3912 2.4114 41 1 1.6639 -2.7115 3.5650 42 1 3.1176 -3.2253 2.6755 43 1 0.5985 -4.4147 0.5988 44 1 1.0676 -7.5653 3.9666 45 1 4.5678 -4.0844 3.2031 46 1 4.1947 -6.9636 3.1867 47 1 2.1412 -4.7924 8.1251 48 1 0.6163 -5.3049 6.1687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_18051846_15607708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:21 Heat of formation + Delta-G solvation = -64.591020 kcal Electronic energy + Delta-G solvation = -28243.968386 eV Core-core repulsion = 24640.508861 eV Total energy + Delta-G solvation = -3603.459525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 370.101 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.71486 -38.47582 -37.43840 -36.84823 -36.66919 -31.60382 -30.86201 -29.46580 -29.08637 -27.92976 -27.84935 -27.37910 -26.64841 -24.07234 -23.27574 -20.69321 -20.38090 -19.18815 -18.87376 -18.38747 -17.37683 -17.17138 -16.54558 -16.45090 -15.97674 -15.84935 -15.68884 -15.48233 -14.87172 -14.75277 -14.48167 -14.36100 -14.01436 -13.96827 -13.93329 -13.57298 -13.54795 -13.35456 -13.27515 -13.14633 -13.11668 -12.94462 -12.92653 -12.85555 -12.57746 -12.40917 -12.27339 -12.15919 -11.88065 -11.82803 -11.66981 -11.58136 -11.50881 -11.23765 -10.71104 -10.37658 -10.07204 -9.69187 -9.58470 -9.30579 -8.97254 -0.17438 0.28635 0.46273 0.76868 0.94573 1.07600 1.24095 1.34081 1.43713 1.45683 1.56359 1.75101 1.84290 1.97636 2.06664 2.44472 3.33770 3.70902 3.89331 4.07800 4.11739 4.12096 4.16728 4.32739 4.40052 4.45865 4.47626 4.48401 4.66273 4.67805 4.70366 4.73326 4.74199 4.81347 4.83322 4.85878 4.98606 4.99678 5.00063 5.10604 5.10852 5.19788 5.22096 5.31539 5.34951 5.42217 5.44985 5.48333 5.53141 5.60124 5.60665 5.83197 6.48344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.285 2.715 6 C -0.511 4.511 7 C -0.512 4.512 8 O -0.622 6.622 9 C 0.149 3.851 10 C -0.090 4.090 11 C -0.177 4.177 12 S 0.100 5.900 13 C -0.205 4.205 14 C -0.021 4.021 15 C -0.020 4.020 16 C -0.215 4.215 17 C -0.040 4.040 18 O -0.519 6.519 19 Si 0.899 3.101 20 H -0.238 1.238 21 H -0.230 1.230 22 H -0.232 1.232 23 S 0.100 5.900 24 C -0.200 4.200 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.173 0.827 44 H 0.162 0.838 45 H 0.122 0.878 46 H 0.375 0.625 47 H 0.169 0.831 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 -0.041 1.933 2.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.416 2.584 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.581 6.581 9 C 0.071 3.929 10 C -0.102 4.102 11 C -0.312 4.312 12 S 0.366 5.634 13 C -0.341 4.341 14 C -0.037 4.037 15 C -0.035 4.035 16 C -0.333 4.333 17 C -0.153 4.153 18 O -0.323 6.323 19 Si 0.718 3.282 20 H -0.161 1.161 21 H -0.153 1.153 22 H -0.156 1.156 23 S 0.365 5.635 24 C -0.336 4.336 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.190 0.810 44 H 0.180 0.820 45 H 0.140 0.860 46 H 0.222 0.778 47 H 0.186 0.814 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.826 -0.667 1.517 2.466 hybrid contribution -0.804 0.848 0.721 1.373 sum 1.022 0.181 2.237 2.466 Atomic orbital electron populations 1.21511 0.93810 1.02016 1.01761 1.25762 1.00671 1.02588 1.12658 1.21559 1.00780 0.94929 1.02134 1.21510 1.00633 1.00232 0.96711 0.76740 0.63143 0.53452 0.65046 1.27038 1.07044 1.09429 1.17812 1.27039 1.25052 1.04782 1.04524 1.85293 1.79317 1.45900 1.47614 1.20537 0.97536 0.88139 0.86662 1.18523 1.01949 0.95808 0.93901 1.25259 1.05214 0.97342 1.03419 1.84349 1.56118 1.10313 1.12664 1.25491 1.06755 1.01204 1.00644 1.16886 1.00470 0.93050 0.93256 1.17277 0.91000 1.02438 0.92823 1.25098 0.98017 1.11802 0.98340 1.24399 1.04974 0.95816 0.90089 1.86585 1.90366 1.17761 1.37637 0.86284 0.76405 0.83404 0.82105 1.16056 1.15278 1.15571 1.84488 1.09265 1.70549 0.99238 1.25579 0.95788 1.08755 1.03431 1.20182 1.01469 1.02961 0.90702 0.92732 0.92809 0.92148 0.92512 0.92494 0.92540 0.92145 0.92824 0.92686 0.91469 0.90734 0.90856 0.90681 0.90646 0.91528 0.91790 0.91488 0.81012 0.82002 0.86030 0.77794 0.81394 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 2 C -0.37 0.06 0.53 -90.62 -0.05 0.01 16 3 C -0.14 0.07 7.85 37.16 0.29 0.36 16 4 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 5 Si 1.28 -0.90 8.45 -169.99 -1.44 -2.34 16 6 C -0.51 0.13 8.50 101.05 0.86 0.99 16 7 C -0.51 0.29 8.50 101.05 0.86 1.15 16 8 O -0.62 -0.50 7.44 -35.23 -0.26 -0.76 16 9 C 0.15 0.13 4.79 36.01 0.17 0.30 16 10 C -0.09 -0.16 5.57 -106.01 -0.59 -0.75 16 11 C -0.18 -0.33 10.42 28.96 0.30 -0.02 16 12 S 0.10 0.10 23.33 -107.50 -2.51 -2.41 16 13 C -0.21 -0.12 11.04 29.39 0.32 0.20 16 14 C -0.02 -0.02 3.49 -106.59 -0.37 -0.40 16 15 C -0.02 -0.01 4.79 -106.59 -0.51 -0.52 16 16 C -0.21 -0.02 5.61 -35.65 -0.20 -0.22 16 17 C -0.04 0.02 2.40 36.00 0.09 0.10 16 18 O -0.52 -0.03 10.92 -35.23 -0.38 -0.41 16 19 Si 0.90 -0.38 26.50 -169.99 -4.51 -4.89 16 20 H -0.24 -0.01 7.11 56.52 0.40 0.40 16 21 H -0.23 -0.12 7.11 56.52 0.40 0.28 16 22 H -0.23 0.04 7.11 56.52 0.40 0.45 16 23 S 0.10 -0.01 20.91 -107.50 -2.25 -2.26 16 24 C -0.20 0.14 11.19 28.96 0.32 0.47 16 25 C -0.12 0.01 10.01 -40.97 -0.41 -0.40 16 26 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 27 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 29 H 0.06 -0.06 7.79 -51.92 -0.40 -0.47 16 30 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 32 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 33 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.05 -0.02 7.79 -51.93 -0.40 -0.42 16 35 H 0.07 -0.02 7.48 -51.93 -0.39 -0.41 16 36 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 37 H 0.07 0.00 7.79 -51.93 -0.40 -0.40 16 38 H 0.07 -0.02 7.79 -51.93 -0.40 -0.43 16 39 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 40 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 41 H 0.06 0.01 7.21 -51.93 -0.37 -0.36 16 42 H 0.07 0.00 4.59 -51.93 -0.24 -0.24 16 43 H 0.17 0.24 7.50 -52.49 -0.39 -0.16 16 44 H 0.16 -0.15 8.06 -52.49 -0.42 -0.57 16 45 H 0.12 -0.14 5.81 -51.93 -0.30 -0.44 16 46 H 0.38 -0.90 8.69 45.56 0.40 -0.51 16 47 H 0.17 -0.44 8.06 -52.49 -0.42 -0.86 16 48 H 0.14 -0.15 8.06 -52.49 -0.42 -0.58 16 LS Contribution 404.87 15.07 6.10 6.10 Total: 0.00 -3.51 404.87 -10.66 -14.17 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: -7.09 Total: -9.02 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 1.67 Total: 1.81 kcal Atomic # 8 Polarization: -0.53 SS G_CDS: -0.65 Total: -1.17 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.94 Total: -7.22 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -4.76 Total: -4.67 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -3.51 -10.66 -14.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_18051846_15607708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.419 kcal (2) G-P(sol) polarization free energy of solvation -3.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds