Wall clock time and date at job start Mon Mar 8 2021 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00241 * 2 1 4 4 O 1.20828 * 120.00277 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00226 * 180.02562 * 3 2 1 6 6 S 1.81394 * 109.47352 * 179.97438 * 5 3 2 7 7 O 1.42103 * 109.47332 * 70.93989 * 6 5 3 8 8 C 1.76204 * 103.00097 * 179.97438 * 6 5 3 9 9 C 1.38320 * 119.88294 * 89.99900 * 8 6 5 10 10 C 1.38010 * 120.12364 * 180.25443 * 9 8 6 11 11 C 1.39339 * 119.87657 * 359.51851 * 10 9 8 12 12 C 1.48392 * 120.11861 * 180.25387 * 11 10 9 13 13 C 1.39294 * 120.11835 * 303.61742 * 12 11 10 14 14 C 1.38155 * 119.86957 * 180.02562 * 13 12 11 15 15 Cl 1.73601 * 119.95607 * 179.97438 * 14 13 12 16 16 C 1.38416 * 120.09464 * 0.02562 * 14 13 12 17 17 C 1.38324 * 120.22716 * 359.97438 * 16 14 13 18 18 C 1.38005 * 120.13701 * 359.71370 * 17 16 14 19 19 C 1.50694 * 120.05031 * 180.27970 * 18 17 16 20 20 O 1.42908 * 109.47020 * 105.36185 * 19 18 17 21 21 Si 1.86295 * 109.47313 * 345.36378 * 19 18 17 22 22 H 1.48504 * 109.47460 * 59.99868 * 21 19 18 23 23 H 1.48501 * 109.47407 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46954 * 300.00067 * 21 19 18 25 25 C 1.39332 * 119.75870 * 0.49744 * 11 10 9 26 26 C 1.38021 * 119.87711 * 359.73668 * 25 11 10 27 27 H 1.08999 * 109.47376 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46953 * 300.00329 * 1 2 3 29 29 H 1.09000 * 109.47150 * 59.99621 * 1 2 3 30 30 H 1.08997 * 109.47204 * 59.99488 * 5 3 2 31 31 H 1.09003 * 109.46670 * 299.99712 * 5 3 2 32 32 H 1.08001 * 119.93441 * 359.97438 * 9 8 6 33 33 H 1.07999 * 120.06244 * 179.71946 * 10 9 8 34 34 H 1.08001 * 120.06685 * 0.02909 * 13 12 11 35 35 H 1.07996 * 119.88784 * 179.97438 * 16 14 13 36 36 H 1.08005 * 119.93144 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47632 * 225.35842 * 19 18 17 38 38 H 0.96700 * 113.99525 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.05878 * 179.74534 * 25 11 10 40 40 H 1.07999 * 119.93430 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 16 4.0807 3.0143 -0.0012 7 8 3.7960 3.5929 1.2651 8 6 5.8395 2.9075 -0.0011 9 6 6.5275 2.8653 -1.2003 10 6 7.9047 2.7764 -1.2060 11 6 8.6028 2.7393 -0.0007 12 6 10.0840 2.6495 -0.0006 13 6 10.7208 1.6027 -0.6632 14 6 12.1001 1.5238 -0.6594 15 17 12.8960 0.2198 -1.4840 16 6 12.8483 2.4823 0.0019 17 6 12.2201 3.5234 0.6612 18 6 10.8431 3.6151 0.6580 19 6 10.1609 4.7536 1.3716 20 8 9.6771 5.6957 0.4120 21 14 11.3766 5.5925 2.5069 22 1 12.5153 6.1181 1.7116 23 1 10.7046 6.7149 3.2097 24 1 11.8794 4.6136 3.5040 25 6 7.9048 2.7818 1.2044 26 6 6.5271 2.8658 1.1984 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.9557 0.7808 -0.8907 31 1 3.9563 0.7805 0.8892 32 1 5.9855 2.8974 -2.1339 33 1 8.4405 2.7390 -2.1429 34 1 10.1375 0.8544 -1.1791 35 1 13.9263 2.4171 0.0031 36 1 12.8086 4.2690 1.1753 37 1 9.3251 4.3680 1.9554 38 1 9.2252 6.4568 0.8014 39 1 8.4408 2.7492 2.1414 40 1 5.9852 2.8991 2.1320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_18313394_11652898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:45:33 Heat of formation + Delta-G solvation = -105.247267 kcal Electronic energy + Delta-G solvation = -27555.860648 eV Core-core repulsion = 23341.033271 eV Total energy + Delta-G solvation = -4214.827377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 368.049 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45352 -41.36306 -39.60573 -37.97404 -37.61525 -37.25824 -36.87431 -34.01183 -32.85849 -32.00823 -31.79517 -30.37424 -28.25832 -26.95658 -25.00772 -23.82068 -22.99066 -22.46669 -21.98642 -19.41642 -18.82078 -18.60324 -18.57989 -17.73230 -17.65415 -17.40718 -17.22302 -16.85229 -16.27546 -16.02065 -15.79705 -15.66771 -15.40364 -15.17667 -15.00371 -14.67938 -14.52269 -14.48052 -14.41413 -13.89914 -13.88209 -13.67453 -13.48208 -13.12096 -12.97049 -12.68199 -12.64345 -12.30288 -12.23755 -12.21659 -12.00434 -11.85709 -11.76981 -11.74618 -11.42045 -10.56757 -10.45581 -10.01047 -9.98637 -9.68693 -9.43852 -0.55434 -0.09584 0.11132 0.29949 0.59945 0.99608 1.03558 1.05714 1.32677 1.37314 1.52794 1.76104 1.78073 2.26302 2.53958 2.79034 3.19727 3.33181 3.61876 3.62551 3.73390 3.76833 3.86017 3.87786 3.93111 4.06672 4.12685 4.20486 4.22587 4.25863 4.33092 4.37422 4.48070 4.57003 4.57671 4.65014 4.87949 4.95147 5.01005 5.09598 5.15769 5.18622 5.27371 5.39609 5.52826 5.79089 6.47096 6.55459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.492 3.508 4 O -0.504 6.504 5 C -0.479 4.479 6 S 1.391 4.609 7 O -0.827 6.827 8 C -0.477 4.477 9 C -0.034 4.034 10 C -0.116 4.116 11 C 0.004 3.996 12 C -0.021 4.021 13 C -0.094 4.094 14 C -0.029 4.029 15 Cl -0.060 7.060 16 C -0.098 4.098 17 C -0.108 4.108 18 C -0.053 4.053 19 C -0.089 4.089 20 O -0.536 6.536 21 Si 0.938 3.062 22 H -0.244 1.244 23 H -0.251 1.251 24 H -0.246 1.246 25 C -0.124 4.124 26 C -0.048 4.048 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.381 0.619 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -1.338 -3.325 3.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.334 3.666 4 O -0.393 6.393 5 C -0.610 4.610 6 S 1.583 4.417 7 O -0.822 6.822 8 C -0.573 4.573 9 C -0.054 4.054 10 C -0.135 4.135 11 C 0.004 3.996 12 C -0.021 4.021 13 C -0.112 4.112 14 C -0.055 4.055 15 Cl -0.031 7.031 16 C -0.117 4.117 17 C -0.126 4.126 18 C -0.053 4.053 19 C -0.199 4.199 20 O -0.342 6.342 21 Si 0.759 3.241 22 H -0.167 1.167 23 H -0.175 1.175 24 H -0.169 1.169 25 C -0.143 4.143 26 C -0.067 4.067 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.174 0.826 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.229 0.771 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.669 -0.434 -3.230 3.327 hybrid contribution 0.457 -1.172 1.822 2.214 sum 1.126 -1.606 -1.408 2.415 Atomic orbital electron populations 1.23398 0.75410 1.04231 1.03069 1.86502 1.24071 1.32791 1.83629 1.22500 0.90078 0.81879 0.72110 1.90748 1.66994 1.35953 1.45580 1.28242 0.94246 1.27407 1.11134 1.70704 0.80444 0.82215 1.08325 1.93116 1.79634 1.65013 1.44457 1.27914 1.19611 1.12459 0.97339 1.20804 0.93894 0.94016 0.96645 1.21314 0.94329 1.00506 0.97365 1.18778 0.90882 0.96118 0.93844 1.18514 0.91973 0.94349 0.97284 1.21112 0.92422 0.98413 0.99276 1.20874 0.92763 0.92469 0.99425 1.98407 1.79967 1.47534 1.77185 1.21101 1.00832 0.93159 0.96594 1.21017 0.93576 0.98374 0.99638 1.19365 0.92875 0.94879 0.98197 1.24892 1.04879 0.92459 0.97682 1.86511 1.78221 1.35607 1.33903 0.85866 0.79382 0.80784 0.78031 1.16747 1.17516 1.16899 1.21257 0.94194 1.01445 0.97378 1.21067 0.94208 0.93733 0.97690 0.87687 0.91573 0.91262 0.82573 0.85411 0.84037 0.84960 0.84186 0.84109 0.84643 0.90188 0.77141 0.85429 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.35 -0.45 10.56 -39.24 -0.41 -0.87 16 3 C 0.49 0.79 7.98 36.01 0.29 1.07 16 4 O -0.50 -2.10 15.61 -18.75 -0.29 -2.40 16 5 C -0.48 0.78 6.48 36.01 0.23 1.01 16 6 S 1.39 -1.05 12.68 -107.50 -1.36 -2.42 16 7 O -0.83 -4.63 16.88 -35.23 -0.59 -5.22 16 8 C -0.48 0.34 5.61 -39.52 -0.22 0.11 16 9 C -0.03 0.08 9.74 -39.63 -0.39 -0.30 16 10 C -0.12 0.11 9.62 -39.26 -0.38 -0.27 16 11 C 0.00 0.00 4.86 -104.90 -0.51 -0.51 16 12 C -0.02 -0.01 5.40 -104.90 -0.57 -0.58 16 13 C -0.09 -0.02 9.40 -39.22 -0.37 -0.39 16 14 C -0.03 -0.02 6.31 -39.55 -0.25 -0.27 16 15 Cl -0.06 -0.04 28.95 -51.86 -1.50 -1.54 16 16 C -0.10 0.00 9.82 -39.48 -0.39 -0.39 16 17 C -0.11 -0.02 8.65 -39.63 -0.34 -0.36 16 18 C -0.05 -0.04 5.30 -104.29 -0.55 -0.59 16 19 C -0.09 0.04 2.07 36.00 0.07 0.11 16 20 O -0.54 -0.01 12.80 -35.23 -0.45 -0.46 16 21 Si 0.94 -0.87 25.48 -169.99 -4.33 -5.20 16 22 H -0.24 0.04 6.74 56.52 0.38 0.42 16 23 H -0.25 0.13 7.11 56.52 0.40 0.53 16 24 H -0.25 0.10 7.11 56.52 0.40 0.50 16 25 C -0.12 -0.05 7.95 -39.25 -0.31 -0.36 16 26 C -0.05 -0.04 9.43 -39.63 -0.37 -0.42 16 27 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 28 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 29 H 0.07 -0.10 8.13 -51.93 -0.42 -0.52 16 30 H 0.16 -0.83 8.14 -51.93 -0.42 -1.26 16 31 H 0.13 -0.18 8.14 -51.92 -0.42 -0.60 16 32 H 0.14 -0.89 8.06 -52.49 -0.42 -1.32 16 33 H 0.13 -0.29 8.06 -52.49 -0.42 -0.72 16 34 H 0.14 -0.15 8.06 -52.49 -0.42 -0.57 16 35 H 0.14 -0.24 8.06 -52.49 -0.42 -0.66 16 36 H 0.14 -0.15 4.88 -52.48 -0.26 -0.41 16 37 H 0.08 -0.11 4.94 -51.93 -0.26 -0.36 16 38 H 0.38 -1.43 8.74 45.56 0.40 -1.03 16 39 H 0.13 -0.10 7.02 -52.49 -0.37 -0.47 16 40 H 0.13 0.22 7.44 -52.49 -0.39 -0.17 16 LS Contribution 369.05 15.07 5.56 5.56 Total: 0.00 -11.61 369.05 -9.87 -21.48 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -3.49 Total: -7.84 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.99 Total: -1.09 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -1.75 Total: -8.94 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: -4.33 Total: -5.20 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -1.36 Total: -2.42 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.50 Total: -1.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -11.61 -9.87 -21.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_18313394_11652898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.765 kcal (2) G-P(sol) polarization free energy of solvation -11.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds