Wall clock time and date at job start Mon Mar 8 2021 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00241 * 2 1 4 4 O 1.20828 * 120.00277 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00226 * 180.02562 * 3 2 1 6 6 S 1.81394 * 109.47352 * 179.97438 * 5 3 2 7 7 O 1.42103 * 109.47332 * 70.93989 * 6 5 3 8 8 C 1.76204 * 103.00097 * 179.97438 * 6 5 3 9 9 C 1.38320 * 119.88294 * 89.99900 * 8 6 5 10 10 C 1.38010 * 120.12364 * 180.25443 * 9 8 6 11 11 C 1.39339 * 119.87657 * 359.51851 * 10 9 8 12 12 C 1.48392 * 120.11861 * 180.25387 * 11 10 9 13 13 C 1.39294 * 120.11835 * 303.61742 * 12 11 10 14 14 C 1.38155 * 119.86957 * 180.02562 * 13 12 11 15 15 Cl 1.73601 * 119.95607 * 179.97438 * 14 13 12 16 16 C 1.38416 * 120.09464 * 0.02562 * 14 13 12 17 17 C 1.38324 * 120.22716 * 359.97438 * 16 14 13 18 18 C 1.38005 * 120.13701 * 359.71370 * 17 16 14 19 19 C 1.50694 * 120.05031 * 180.27970 * 18 17 16 20 20 O 1.42908 * 109.47020 * 105.36185 * 19 18 17 21 21 Si 1.86295 * 109.47313 * 345.36378 * 19 18 17 22 22 H 1.48504 * 109.47460 * 59.99868 * 21 19 18 23 23 H 1.48501 * 109.47407 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46954 * 300.00067 * 21 19 18 25 25 C 1.39332 * 119.75870 * 0.49744 * 11 10 9 26 26 C 1.38021 * 119.87711 * 359.73668 * 25 11 10 27 27 H 1.08999 * 109.47376 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46953 * 300.00329 * 1 2 3 29 29 H 1.09000 * 109.47150 * 59.99621 * 1 2 3 30 30 H 1.08997 * 109.47204 * 59.99488 * 5 3 2 31 31 H 1.09003 * 109.46670 * 299.99712 * 5 3 2 32 32 H 1.08001 * 119.93441 * 359.97438 * 9 8 6 33 33 H 1.07999 * 120.06244 * 179.71946 * 10 9 8 34 34 H 1.08001 * 120.06685 * 0.02909 * 13 12 11 35 35 H 1.07996 * 119.88784 * 179.97438 * 16 14 13 36 36 H 1.08005 * 119.93144 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47632 * 225.35842 * 19 18 17 38 38 H 0.96700 * 113.99525 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.05878 * 179.74534 * 25 11 10 40 40 H 1.07999 * 119.93430 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 16 4.0807 3.0143 -0.0012 7 8 3.7960 3.5929 1.2651 8 6 5.8395 2.9075 -0.0011 9 6 6.5275 2.8653 -1.2003 10 6 7.9047 2.7764 -1.2060 11 6 8.6028 2.7393 -0.0007 12 6 10.0840 2.6495 -0.0006 13 6 10.7208 1.6027 -0.6632 14 6 12.1001 1.5238 -0.6594 15 17 12.8960 0.2198 -1.4840 16 6 12.8483 2.4823 0.0019 17 6 12.2201 3.5234 0.6612 18 6 10.8431 3.6151 0.6580 19 6 10.1609 4.7536 1.3716 20 8 9.6771 5.6957 0.4120 21 14 11.3766 5.5925 2.5069 22 1 12.5153 6.1181 1.7116 23 1 10.7046 6.7149 3.2097 24 1 11.8794 4.6136 3.5040 25 6 7.9048 2.7818 1.2044 26 6 6.5271 2.8658 1.1984 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.9557 0.7808 -0.8907 31 1 3.9563 0.7805 0.8892 32 1 5.9855 2.8974 -2.1339 33 1 8.4405 2.7390 -2.1429 34 1 10.1375 0.8544 -1.1791 35 1 13.9263 2.4171 0.0031 36 1 12.8086 4.2690 1.1753 37 1 9.3251 4.3680 1.9554 38 1 9.2252 6.4568 0.8014 39 1 8.4408 2.7492 2.1414 40 1 5.9852 2.8991 2.1320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_18313394_11652898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:45:32 Heat of formation + Delta-G solvation = -106.113372 kcal Electronic energy + Delta-G solvation = -27555.898205 eV Core-core repulsion = 23341.033271 eV Total energy + Delta-G solvation = -4214.864934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 368.049 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55279 -41.31786 -39.54491 -37.94946 -37.72849 -37.24440 -37.07287 -33.96358 -32.82299 -31.93213 -31.76924 -30.32667 -28.19494 -26.91692 -24.96735 -23.73189 -22.96424 -22.51784 -21.94879 -19.39408 -18.88267 -18.57197 -18.52277 -17.78699 -17.70106 -17.40171 -17.18876 -16.81490 -16.23084 -15.96701 -15.78427 -15.65842 -15.35989 -15.11757 -14.96301 -14.64521 -14.50601 -14.45216 -14.34056 -13.96507 -13.86315 -13.64285 -13.45202 -13.10264 -12.94847 -12.65866 -12.62836 -12.27100 -12.20802 -12.16153 -11.97899 -11.90525 -11.88977 -11.74854 -11.47800 -10.53805 -10.39183 -9.97849 -9.92961 -9.69799 -9.41205 -0.50704 -0.08230 0.14166 0.37813 0.63683 0.96784 1.02612 1.06051 1.38281 1.42849 1.59376 1.79252 1.81937 2.29290 2.58522 2.82305 3.27161 3.39587 3.62453 3.67643 3.81144 3.86048 3.95960 4.00163 4.02648 4.12682 4.24289 4.29922 4.31857 4.40526 4.43900 4.45695 4.56335 4.62574 4.68931 4.73419 4.93754 5.02254 5.04710 5.14033 5.23593 5.24169 5.24900 5.46332 5.56872 5.88725 6.47470 6.69602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.360 6.360 3 C 0.487 3.513 4 O -0.537 6.537 5 C -0.473 4.473 6 S 1.432 4.568 7 O -0.898 6.898 8 C -0.477 4.477 9 C -0.023 4.023 10 C -0.123 4.123 11 C -0.005 4.005 12 C -0.028 4.028 13 C -0.095 4.095 14 C -0.038 4.038 15 Cl -0.064 7.064 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.066 4.066 19 C -0.090 4.090 20 O -0.551 6.551 21 Si 0.967 3.033 22 H -0.254 1.254 23 H -0.257 1.257 24 H -0.254 1.254 25 C -0.132 4.132 26 C -0.068 4.068 27 H 0.130 0.870 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.202 0.798 31 H 0.128 0.872 32 H 0.188 0.812 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.395 0.605 39 H 0.130 0.870 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -2.053 -4.922 5.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C 0.331 3.669 4 O -0.428 6.428 5 C -0.605 4.605 6 S 1.627 4.373 7 O -0.894 6.894 8 C -0.574 4.574 9 C -0.041 4.041 10 C -0.141 4.141 11 C -0.005 4.005 12 C -0.029 4.029 13 C -0.113 4.113 14 C -0.064 4.064 15 Cl -0.035 7.035 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.066 4.066 19 C -0.200 4.200 20 O -0.360 6.360 21 Si 0.790 3.210 22 H -0.178 1.178 23 H -0.182 1.182 24 H -0.178 1.178 25 C -0.151 4.151 26 C -0.087 4.087 27 H 0.148 0.852 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.219 0.781 31 H 0.146 0.854 32 H 0.205 0.795 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.148 0.852 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.865 -1.140 -4.820 5.028 hybrid contribution 0.380 -1.011 2.282 2.524 sum 1.245 -2.151 -2.539 3.552 Atomic orbital electron populations 1.23626 0.74486 1.05870 1.02908 1.86501 1.25145 1.32578 1.83333 1.23041 0.91163 0.81531 0.71133 1.90739 1.67950 1.36908 1.47173 1.28217 0.92312 1.26641 1.13334 1.69843 0.79636 0.81898 1.05891 1.93011 1.81230 1.68047 1.47087 1.27839 1.19153 1.12846 0.97560 1.21305 0.93578 0.91615 0.97651 1.21621 0.95050 1.00022 0.97445 1.18881 0.90788 0.96501 0.94308 1.18629 0.92299 0.94496 0.97467 1.21248 0.92444 0.98486 0.99151 1.20976 0.93030 0.92609 0.99811 1.98402 1.80042 1.47732 1.77293 1.21309 1.01651 0.92890 0.96215 1.21187 0.93647 0.98744 0.99862 1.19606 0.93274 0.95342 0.98385 1.24938 1.05181 0.92319 0.97558 1.86461 1.78524 1.36350 1.34647 0.85439 0.78472 0.79913 0.77127 1.17790 1.18153 1.17784 1.21280 0.94023 1.01963 0.97849 1.21049 0.94577 0.95283 0.97841 0.85195 0.92488 0.90753 0.78108 0.85358 0.79460 0.83446 0.83080 0.82742 0.83763 0.89736 0.75502 0.85246 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.77 10.56 -51.34 -0.54 -1.31 16 3 C 0.49 1.52 7.98 71.24 0.57 2.09 16 4 O -0.54 -4.92 15.61 21.96 0.34 -4.57 16 5 C -0.47 1.99 6.48 71.24 0.46 2.45 16 6 S 1.43 -2.06 12.68 -56.49 -0.72 -2.78 16 7 O -0.90 -11.80 16.88 -148.98 -2.52 -14.32 16 8 C -0.48 0.89 5.61 22.31 0.13 1.02 16 9 C -0.02 0.16 9.74 22.24 0.22 0.37 16 10 C -0.12 0.42 9.62 22.48 0.22 0.63 16 11 C 0.00 0.00 4.86 -20.04 -0.10 -0.10 16 12 C -0.03 -0.04 5.40 -20.05 -0.11 -0.15 16 13 C -0.09 -0.03 9.40 22.50 0.21 0.18 16 14 C -0.04 -0.04 6.31 22.29 0.14 0.10 16 15 Cl -0.06 -0.08 28.95 -2.72 -0.08 -0.16 16 16 C -0.10 -0.01 9.82 22.33 0.22 0.21 16 17 C -0.12 -0.07 8.65 22.24 0.19 0.12 16 18 C -0.07 -0.11 5.30 -19.65 -0.10 -0.22 16 19 C -0.09 0.04 2.07 71.23 0.15 0.18 16 20 O -0.55 -0.13 12.80 -148.98 -1.91 -2.04 16 21 Si 0.97 -1.36 25.48 68.60 1.75 0.39 16 22 H -0.25 -0.01 6.74 99.48 0.67 0.66 16 23 H -0.26 0.17 7.11 99.48 0.71 0.87 16 24 H -0.25 0.06 7.11 99.48 0.71 0.77 16 25 C -0.13 -0.21 7.95 22.48 0.18 -0.04 16 26 C -0.07 -0.20 9.43 22.24 0.21 0.01 16 27 H 0.13 -0.96 8.14 -2.39 -0.02 -0.97 16 28 H 0.06 0.00 8.13 -2.38 -0.02 -0.02 16 29 H 0.07 -0.22 8.13 -2.39 -0.02 -0.23 16 30 H 0.20 -2.76 8.14 -2.39 -0.02 -2.78 16 31 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.19 -3.12 8.06 -2.91 -0.02 -3.14 16 33 H 0.15 -0.97 8.06 -2.91 -0.02 -0.99 16 34 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 35 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 36 H 0.15 -0.29 4.88 -2.91 -0.01 -0.30 16 37 H 0.08 -0.14 4.94 -2.39 -0.01 -0.16 16 38 H 0.40 -2.84 8.74 -74.06 -0.65 -3.49 16 39 H 0.13 -0.01 7.02 -2.91 -0.02 -0.03 16 40 H 0.11 0.67 7.44 -2.91 -0.02 0.65 16 Total: 0.00 -28.65 369.05 1.28 -27.37 By element: Atomic # 1 Polarization: -11.78 SS G_CDS: 1.18 Total: -10.60 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 3.77 Total: 8.02 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -4.62 Total: -22.24 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 1.75 Total: 0.39 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -0.72 Total: -2.78 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -28.65 1.28 -27.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_18313394_11652898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.743 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds