Wall clock time and date at job start Mon Mar 8 2021 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47228 * 2 1 4 4 C 1.50704 * 109.47106 * 240.00240 * 2 1 3 5 5 C 1.39322 * 120.04553 * 285.03545 * 4 2 1 6 6 C 1.48394 * 120.11627 * 0.02592 * 5 4 2 7 7 C 1.39335 * 120.11681 * 303.08903 * 6 5 4 8 8 C 1.38023 * 119.87790 * 180.02562 * 7 6 5 9 9 C 1.38325 * 120.11604 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.87506 * 179.97438 * 9 8 7 11 11 H 1.08995 * 112.90761 * 348.75009 * 10 9 8 12 12 C 1.53788 * 113.61384 * 119.99838 * 10 9 8 13 13 C 1.53782 * 87.17210 * 140.02302 * 12 10 9 14 14 H 1.08994 * 113.61106 * 89.07431 * 13 12 10 15 15 O 1.42901 * 113.61519 * 219.97908 * 13 12 10 16 16 C 1.53788 * 87.08017 * 334.52610 * 13 12 10 17 17 C 1.38321 * 120.24591 * 0.24997 * 9 8 7 18 18 C 1.38016 * 120.12128 * 359.49571 * 17 9 8 19 19 C 1.39339 * 119.77133 * 179.74759 * 5 4 2 20 20 C 1.38123 * 119.86053 * 0.25151 * 19 5 4 21 21 Cl 1.73600 * 119.94860 * 179.97438 * 20 19 5 22 22 C 1.38455 * 120.09264 * 0.02562 * 20 19 5 23 23 C 1.38048 * 120.05022 * 105.29181 * 4 2 1 24 24 H 0.96698 * 113.99953 * 59.99655 * 1 2 3 25 25 H 1.08999 * 109.47481 * 120.00288 * 2 1 3 26 26 H 1.48501 * 109.99859 * 60.00075 * 3 2 1 27 27 H 1.48494 * 110.00106 * 181.31754 * 3 2 1 28 28 H 1.07994 * 120.06471 * 0.02562 * 7 6 5 29 29 H 1.07995 * 119.94478 * 179.97438 * 8 7 6 30 30 H 1.09006 * 113.61218 * 25.43725 * 12 10 9 31 31 H 1.09000 * 113.61809 * 254.61725 * 12 10 9 32 32 H 0.96696 * 114.00157 * 180.02562 * 15 13 12 33 33 H 1.08997 * 113.60834 * 139.98254 * 16 13 12 34 34 H 1.08994 * 113.61370 * 270.79256 * 16 13 12 35 35 H 1.07997 * 119.93793 * 179.74235 * 17 9 8 36 36 H 1.07994 * 120.06498 * 180.23022 * 18 17 9 37 37 H 1.07993 * 120.06858 * 180.23271 * 19 5 4 38 38 H 1.08004 * 119.87757 * 179.97438 * 22 20 19 39 39 H 1.08000 * 119.93236 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.8689 -2.1000 -1.3081 6 6 1.3074 -2.8842 -0.1803 7 6 1.8518 -2.7610 1.0963 8 6 1.3261 -3.4932 2.1416 9 6 0.2610 -4.3484 1.9233 10 6 -0.3084 -5.1457 3.0684 11 1 0.3169 -5.1128 3.9606 12 6 -1.7925 -4.8525 3.3453 13 6 -1.9666 -6.3611 3.5877 14 1 -1.7938 -6.6599 4.6215 15 8 -3.1805 -6.8907 3.0510 16 6 -0.7470 -6.5688 2.6742 17 6 -0.2796 -4.4788 0.6568 18 6 0.2349 -3.7476 -0.3945 19 6 2.3301 -2.7506 -2.4507 20 6 2.8512 -2.0155 -3.4976 21 17 3.4271 -2.8238 -4.9219 22 6 2.9159 -0.6351 -3.4120 23 6 2.4589 0.0145 -2.2803 24 1 -0.3933 0.4417 -0.7650 25 1 1.7924 -0.5139 0.8899 26 1 1.5615 2.4679 1.2085 27 1 3.5346 1.7703 -0.0321 28 1 2.6836 -2.0939 1.2677 29 1 1.7475 -3.3988 3.1315 30 1 -2.3348 -4.4848 2.4741 31 1 -1.9590 -4.2452 4.2349 32 1 -3.2959 -7.8390 3.2006 33 1 -0.0682 -7.3472 3.0226 34 1 -1.0036 -6.6718 1.6199 35 1 -1.1084 -5.1511 0.4912 36 1 -0.1903 -3.8473 -1.3822 37 1 2.2805 -3.8273 -2.5175 38 1 3.3244 -0.0638 -4.2325 39 1 2.5109 1.0915 -2.2191 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_18313394_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:10 Heat of formation + Delta-G solvation = -5.132760 kcal Electronic energy + Delta-G solvation = -23520.818370 eV Core-core repulsion = 20000.426301 eV Total energy + Delta-G solvation = -3520.392069 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49845 -40.68340 -39.02143 -37.95563 -37.17059 -36.09907 -33.57848 -32.66233 -31.87198 -30.33583 -27.01293 -26.71511 -25.90669 -24.04575 -23.53793 -22.57665 -21.85926 -20.28754 -18.90836 -18.58369 -17.88524 -17.04096 -16.94831 -16.58527 -16.39795 -16.15257 -15.69002 -15.50021 -15.23804 -15.05143 -14.62797 -14.48460 -14.27521 -14.21610 -13.89615 -13.69269 -13.49383 -13.31799 -12.86380 -12.74057 -12.40920 -12.37151 -12.19757 -12.12817 -11.98314 -11.76887 -11.66818 -11.32588 -10.74675 -10.45567 -10.23780 -9.90850 -9.84932 -9.25307 -5.04139 -0.23810 0.01149 0.41148 0.48230 1.06182 1.26435 1.62554 1.94926 2.37534 2.70799 3.25934 3.39082 3.54302 3.57595 3.62113 3.62879 3.79311 3.91068 3.91782 3.98004 4.00560 4.08463 4.09366 4.22462 4.35958 4.43337 4.48251 4.57176 4.62590 4.70608 4.76691 4.78654 4.92672 4.96066 4.99295 5.05658 5.11678 5.13508 5.24825 5.32407 5.38043 5.53473 5.64985 5.67424 5.97611 6.76087 6.87896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.080 4.080 3 Si 0.773 3.227 4 C -0.108 4.108 5 C -0.021 4.021 6 C -0.052 4.052 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.070 4.070 10 C -0.070 4.070 11 H 0.115 0.885 12 C -0.125 4.125 13 C 0.076 3.924 14 H 0.101 0.899 15 O -0.582 6.582 16 C -0.159 4.159 17 C -0.119 4.119 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.037 4.037 21 Cl -0.070 7.070 22 C -0.104 4.104 23 C -0.095 4.095 24 H 0.392 0.608 25 H 0.106 0.894 26 H -0.298 1.298 27 H -0.280 1.280 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.395 0.605 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 1.069 -0.061 1.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.189 4.189 3 Si 0.678 3.322 4 C -0.108 4.108 5 C -0.021 4.021 6 C -0.052 4.052 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.070 4.070 10 C -0.088 4.088 11 H 0.133 0.867 12 C -0.163 4.163 13 C 0.017 3.983 14 H 0.119 0.881 15 O -0.390 6.390 16 C -0.197 4.197 17 C -0.137 4.137 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.064 4.064 21 Cl -0.041 7.041 22 C -0.122 4.122 23 C -0.112 4.112 24 H 0.242 0.758 25 H 0.123 0.877 26 H -0.226 1.226 27 H -0.206 1.206 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.021 1.874 0.589 2.214 hybrid contribution 0.244 -1.430 0.168 1.461 sum 1.265 0.444 0.758 1.540 Atomic orbital electron populations 1.86536 1.16807 1.82100 1.50093 1.25408 0.85742 1.10697 0.97035 0.93944 0.78136 0.74716 0.85399 1.20608 0.99779 0.93098 0.97336 1.18601 0.97928 0.92569 0.93033 1.18648 0.96646 0.97253 0.92614 1.21249 1.00126 0.99667 0.92088 1.21187 0.96522 0.96536 0.99573 1.19845 0.95636 0.96974 0.94536 1.21390 0.95645 0.95003 0.96789 0.86725 1.23170 0.94853 0.95661 1.02606 1.23436 0.83391 0.94514 0.96932 0.88149 1.86494 1.41146 1.30023 1.81384 1.23825 0.98206 0.96434 1.01192 1.21070 1.00317 0.99811 0.92465 1.21246 0.95784 0.95747 0.99565 1.21192 0.98875 1.00679 0.91795 1.21017 1.02209 0.93617 0.89539 1.98399 1.87395 1.79832 1.38451 1.21379 0.99415 0.91874 0.99581 1.21158 0.97377 1.00770 0.91907 0.75800 0.87679 1.22643 1.20638 0.85548 0.84338 0.90600 0.90139 0.75533 0.89926 0.89723 0.85392 0.85438 0.84686 0.82260 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.67 12.82 -148.98 -1.91 -2.58 16 2 C -0.08 0.01 2.07 71.24 0.15 0.15 16 3 Si 0.77 -2.26 29.92 68.60 2.05 -0.21 16 4 C -0.11 0.00 5.26 -19.65 -0.10 -0.11 16 5 C -0.02 -0.06 5.40 -20.05 -0.11 -0.17 16 6 C -0.05 -0.23 4.85 -20.04 -0.10 -0.33 16 7 C -0.11 -0.44 7.95 22.48 0.18 -0.26 16 8 C -0.12 -0.35 9.69 22.24 0.22 -0.13 16 9 C -0.07 -0.22 5.30 -19.82 -0.11 -0.32 16 10 C -0.07 0.02 3.99 -10.92 -0.04 -0.03 16 11 H 0.11 -0.36 8.09 -2.39 -0.02 -0.38 16 12 C -0.13 -0.18 7.37 31.12 0.23 0.05 16 13 C 0.08 -0.05 5.21 31.12 0.16 0.12 16 14 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 15 O -0.58 -1.25 13.67 -148.98 -2.04 -3.29 16 16 C -0.16 0.16 7.29 31.21 0.23 0.39 16 17 C -0.12 -0.48 8.61 22.24 0.19 -0.29 16 18 C -0.11 -0.47 9.63 22.48 0.22 -0.26 16 19 C -0.11 -0.29 9.41 22.51 0.21 -0.07 16 20 C -0.04 -0.06 6.31 22.29 0.14 0.08 16 21 Cl -0.07 -0.17 28.95 -2.72 -0.08 -0.25 16 22 C -0.10 0.22 9.82 22.33 0.22 0.44 16 23 C -0.09 0.34 8.65 22.23 0.19 0.53 16 24 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 25 H 0.11 0.24 4.94 -2.39 -0.01 0.23 16 26 H -0.30 -1.48 7.11 99.48 0.71 -0.78 16 27 H -0.28 -0.40 7.11 99.48 0.71 0.31 16 28 H 0.13 0.21 7.02 -2.91 -0.02 0.19 16 29 H 0.14 -0.14 8.05 -2.91 -0.02 -0.17 16 30 H 0.08 0.38 7.73 -2.38 -0.02 0.36 16 31 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.39 -2.46 9.12 -74.06 -0.68 -3.14 16 33 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.08 0.08 6.30 -2.39 -0.02 0.07 16 35 H 0.13 0.35 6.63 -2.91 -0.02 0.34 16 36 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 37 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.16 -1.00 8.06 -2.91 -0.02 -1.03 16 39 H 0.17 -1.63 5.12 -2.91 -0.01 -1.64 16 Total: 0.00 -15.45 336.68 -0.27 -15.72 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: -0.18 Total: -9.19 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 1.88 Total: -0.21 kcal Atomic # 8 Polarization: -1.92 SS G_CDS: -3.95 Total: -5.87 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: 2.05 Total: -0.21 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -15.45 -0.27 -15.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_18313394_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.588 kcal (2) G-P(sol) polarization free energy of solvation -15.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds