Wall clock time and date at job start Mon Mar 8 2021 07:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86296 * 109.47234 * 2 1 4 4 C 1.50706 * 109.46909 * 239.99981 * 2 1 3 5 5 C 1.38601 * 120.71641 * 119.72476 * 4 2 1 6 6 N 1.32279 * 119.19426 * 179.78783 * 5 4 2 7 7 C 1.32495 * 120.74199 * 0.47065 * 6 5 4 8 8 N 1.38405 * 119.22157 * 179.75824 * 7 6 5 9 9 C 1.47637 * 110.99861 * 29.43408 * 8 7 6 10 10 C 1.53651 * 88.14818 * 222.10054 * 9 8 7 11 11 C 1.46697 * 110.99728 * 293.75405 * 8 7 6 12 12 C 1.53064 * 120.99400 * 12.08604 * 11 8 7 13 13 C 1.53919 * 86.83967 * 209.64347 * 12 11 8 14 14 C 1.50702 * 113.66094 * 139.46675 * 13 12 11 15 15 N 1.30494 * 125.65431 * 167.30946 * 14 13 12 16 16 C 1.34127 * 109.26079 * 179.97438 * 15 14 13 17 17 C 1.34669 * 108.01778 * 0.02562 * 16 15 14 18 18 N 1.35042 * 125.64456 * 347.00471 * 14 13 12 19 19 C 1.53064 * 120.99167 * 264.01860 * 11 8 7 20 20 N 1.32498 * 121.56317 * 359.77721 * 7 6 5 21 21 C 1.32276 * 120.73810 * 359.97438 * 20 7 6 22 22 H 0.96697 * 113.99431 * 59.99927 * 1 2 3 23 23 H 1.08998 * 109.46907 * 120.00422 * 2 1 3 24 24 H 1.48504 * 109.99963 * 298.68304 * 3 2 1 25 25 H 1.48500 * 109.99980 * 60.00081 * 3 2 1 26 26 H 1.07999 * 120.40675 * 359.97438 * 5 4 2 27 27 H 1.08994 * 113.43938 * 336.92028 * 9 8 7 28 28 H 1.08996 * 113.43607 * 107.28199 * 9 8 7 29 29 H 1.08993 * 114.21170 * 271.76519 * 10 9 8 30 30 H 1.08998 * 114.38594 * 138.93675 * 10 9 8 31 31 H 1.09007 * 113.65324 * 324.12606 * 12 11 8 32 32 H 1.08997 * 113.65591 * 95.15291 * 12 11 8 33 33 H 1.09001 * 113.58520 * 270.26826 * 13 12 11 34 34 H 1.07995 * 125.99408 * 179.97438 * 16 15 14 35 35 H 1.08003 * 126.59260 * 180.02562 * 17 16 15 36 36 H 0.96997 * 126.40683 * 0.02562 * 18 14 13 37 37 H 1.09002 * 113.65440 * 264.84721 * 19 11 8 38 38 H 1.09006 * 113.65372 * 35.78395 * 19 11 8 39 39 H 1.08006 * 120.39875 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7244 -0.0496 -2.1554 6 7 3.1522 -0.7035 -3.2227 7 6 2.8230 -1.9721 -3.4168 8 7 3.2840 -2.6245 -4.5471 9 6 4.5788 -2.0687 -4.9876 10 6 4.0640 -2.1470 -6.4332 11 6 2.6949 -2.0510 -5.7620 12 6 1.9318 -0.7249 -5.7177 13 6 1.1022 -1.2608 -6.8983 14 6 -0.3668 -0.9389 -6.8006 15 7 -1.2393 -1.0674 -7.7625 16 6 -2.4469 -0.6891 -7.3180 17 6 -2.3177 -0.3113 -6.0319 18 7 -0.9994 -0.4750 -5.7014 19 6 1.4564 -2.6763 -6.4084 20 7 2.0627 -2.6311 -2.5547 21 6 1.6058 -2.0372 -1.4646 22 1 -0.3932 0.4417 -0.7650 23 1 1.7924 -0.5139 0.8899 24 1 1.5879 2.4585 -1.2242 25 1 1.5616 2.4678 1.2085 26 1 2.9923 0.9858 -2.0051 27 1 4.7524 -1.0490 -4.6439 28 1 5.4233 -2.7293 -4.7918 29 1 4.2550 -3.1010 -6.9246 30 1 4.3209 -1.2856 -7.0497 31 1 1.3529 -0.5837 -4.8049 32 1 2.5440 0.1407 -5.9707 33 1 1.5243 -1.0185 -7.8736 34 1 -3.3621 -0.6871 -7.8912 35 1 -3.1041 0.0470 -5.3841 36 1 -0.5949 -0.2898 -4.8395 37 1 1.6881 -3.3728 -7.2142 38 1 0.7453 -3.0823 -5.6888 39 1 0.9860 -2.5794 -0.7658 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15704104_12175864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:33:24 Heat of formation + Delta-G solvation = 178.477878 kcal Electronic energy + Delta-G solvation = -24880.073018 eV Core-core repulsion = 21407.920096 eV Total energy + Delta-G solvation = -3472.152922 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56943 -42.86322 -41.44708 -38.43543 -37.32673 -35.04522 -33.83880 -33.42758 -30.60867 -30.18595 -27.22593 -26.56076 -26.19534 -25.88889 -23.55940 -23.28353 -22.21580 -21.34049 -20.07342 -19.39261 -19.19530 -18.38200 -18.16115 -17.13487 -16.77004 -16.49051 -16.42726 -16.25632 -16.08722 -15.53817 -14.99802 -14.94719 -14.73755 -14.59508 -14.26225 -13.93278 -13.62177 -13.46124 -13.24755 -13.01836 -12.71771 -12.41948 -12.37198 -12.12312 -11.97857 -11.83914 -11.47854 -11.13920 -10.97761 -10.96962 -10.74530 -10.55598 -9.93288 -9.34413 -5.25088 -0.57507 -0.19694 0.93984 1.06031 1.28638 1.69963 1.98975 2.12491 2.19493 2.28430 2.74577 2.97700 3.09153 3.13648 3.23263 3.26999 3.29605 3.36582 3.51729 3.69201 3.81276 3.97154 4.04084 4.08717 4.24101 4.30273 4.38463 4.41405 4.46291 4.48283 4.60013 4.64762 4.67989 4.75891 4.78673 4.91134 4.98332 5.06665 5.09389 5.20430 5.53415 5.79524 5.93137 6.03491 6.31752 6.85429 7.14745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.524 6.524 2 C -0.063 4.063 3 Si 0.682 3.318 4 C -0.237 4.237 5 C 0.163 3.837 6 N -0.532 5.532 7 C 0.465 3.535 8 N -0.406 5.406 9 C 0.009 3.991 10 C -0.115 4.115 11 C 0.055 3.945 12 C -0.123 4.123 13 C -0.022 4.022 14 C 0.222 3.778 15 N -0.483 5.483 16 C -0.024 4.024 17 C -0.058 4.058 18 N -0.567 5.567 19 C -0.103 4.103 20 N -0.491 5.491 21 C 0.186 3.814 22 H 0.375 0.625 23 H 0.127 0.873 24 H -0.256 1.256 25 H -0.248 1.248 26 H 0.170 0.830 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.412 0.588 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 3.426 2.425 5.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.174 4.174 3 Si 0.582 3.418 4 C -0.242 4.242 5 C -0.004 4.004 6 N -0.249 5.249 7 C 0.110 3.890 8 N -0.128 5.128 9 C -0.119 4.119 10 C -0.153 4.153 11 C -0.035 4.035 12 C -0.163 4.163 13 C -0.043 4.043 14 C -0.042 4.042 15 N -0.203 5.203 16 C -0.172 4.172 17 C -0.192 4.192 18 N -0.170 5.170 19 C -0.142 4.142 20 N -0.205 5.205 21 C 0.018 3.982 22 H 0.223 0.777 23 H 0.145 0.855 24 H -0.181 1.181 25 H -0.172 1.172 26 H 0.187 0.813 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.190 0.810 35 H 0.194 0.806 36 H 0.249 0.751 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.355 2.447 1.515 4.420 hybrid contribution -1.578 1.421 1.735 2.742 sum 1.776 3.868 3.250 5.355 Atomic orbital electron populations 1.86662 1.17275 1.79822 1.49235 1.24868 0.84112 1.11044 0.97396 0.95056 0.91509 0.74021 0.81257 1.22104 1.03394 0.98126 1.00530 1.23016 0.90089 0.99680 0.87626 1.68512 1.24550 1.09687 1.22167 1.21925 0.89423 0.84826 0.92841 1.66437 1.05802 1.43002 0.97541 1.23935 0.91702 1.01832 0.94463 1.22979 0.91660 1.04412 0.96216 1.23500 0.95540 0.94859 0.89627 1.23195 0.97947 0.97688 0.97475 1.20877 0.85321 0.97589 1.00517 1.22886 0.96030 1.02250 0.83045 1.70251 1.00181 1.20713 1.29118 1.22420 0.96741 1.04612 0.93403 1.22806 0.86100 1.10778 0.99475 1.43250 1.08922 1.51293 1.13565 1.22946 0.95385 0.95593 1.00265 1.68263 1.10893 1.38272 1.03038 1.23245 0.91996 0.90748 0.92170 0.77731 0.85500 1.18075 1.17227 0.81298 0.87933 0.88767 0.87588 0.88979 0.91083 0.88969 0.85520 0.81041 0.80552 0.75077 0.88994 0.89444 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.90 12.79 -35.23 -0.45 0.45 16 2 C -0.06 0.20 2.85 36.01 0.10 0.30 16 3 Si 0.68 -2.41 29.87 -169.99 -5.08 -7.49 16 4 C -0.24 0.49 5.40 -104.35 -0.56 -0.07 16 5 C 0.16 -0.31 9.92 -17.22 -0.17 -0.48 16 6 N -0.53 -0.01 6.80 -13.93 -0.09 -0.11 16 7 C 0.46 0.79 5.80 -322.80 -1.87 -1.09 16 8 N -0.41 -0.59 6.53 -173.20 -1.13 -1.72 16 9 C 0.01 -0.01 7.57 -8.77 -0.07 -0.07 16 10 C -0.11 0.24 8.21 -26.51 -0.22 0.02 16 11 C 0.05 -0.02 1.14 -137.45 -0.16 -0.18 16 12 C -0.12 0.11 5.71 -26.22 -0.15 -0.04 16 13 C -0.02 0.00 4.29 -90.82 -0.39 -0.39 16 14 C 0.22 0.55 7.36 -155.42 -1.14 -0.60 16 15 N -0.48 -2.35 11.25 -10.82 -0.12 -2.47 16 16 C -0.02 -0.07 11.87 -17.81 -0.21 -0.28 16 17 C -0.06 -0.05 12.04 -16.56 -0.20 -0.25 16 18 N -0.57 -0.39 5.94 -10.23 -0.06 -0.46 16 19 C -0.10 -0.04 7.51 -26.22 -0.20 -0.24 16 20 N -0.49 -1.17 10.47 -13.93 -0.15 -1.32 16 21 C 0.19 -0.05 10.92 -17.23 -0.19 -0.24 16 22 H 0.38 -1.70 8.70 45.56 0.40 -1.31 16 23 H 0.13 -0.48 7.96 -51.93 -0.41 -0.90 16 24 H -0.26 0.48 7.11 56.52 0.40 0.88 16 25 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 26 H 0.17 -0.73 5.04 -52.49 -0.26 -0.99 16 27 H 0.10 -0.08 6.61 -51.93 -0.34 -0.42 16 28 H 0.09 -0.10 8.14 -51.93 -0.42 -0.53 16 29 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 30 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 31 H 0.07 -0.02 5.29 -51.92 -0.27 -0.29 16 32 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 33 H 0.13 -0.07 8.14 -51.93 -0.42 -0.50 16 34 H 0.17 0.13 8.06 -52.49 -0.42 -0.29 16 35 H 0.18 -0.41 8.06 -52.48 -0.42 -0.83 16 36 H 0.41 -0.55 7.53 -40.82 -0.31 -0.86 16 37 H 0.09 -0.01 8.14 -51.93 -0.42 -0.44 16 38 H 0.09 0.20 8.10 -51.93 -0.42 -0.22 16 39 H 0.18 -0.31 8.06 -52.48 -0.42 -0.74 16 LS Contribution 320.70 15.07 4.83 4.83 Total: 0.00 -8.61 320.70 -12.30 -20.91 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: -4.63 Total: -9.03 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -5.42 Total: -3.60 kcal Atomic # 7 Polarization: -4.52 SS G_CDS: -1.55 Total: -6.07 kcal Atomic # 8 Polarization: 0.90 SS G_CDS: -0.45 Total: 0.45 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: -5.08 Total: -7.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -8.61 -12.30 -20.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15704104_12175864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.387 kcal (2) G-P(sol) polarization free energy of solvation -8.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds