Wall clock time and date at job start Mon Mar 8 2021 07:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86296 * 109.47234 * 2 1 4 4 C 1.50706 * 109.46909 * 239.99981 * 2 1 3 5 5 C 1.38601 * 120.71641 * 119.72476 * 4 2 1 6 6 N 1.32279 * 119.19426 * 179.78783 * 5 4 2 7 7 C 1.32495 * 120.74199 * 0.47065 * 6 5 4 8 8 N 1.38405 * 119.22157 * 179.75824 * 7 6 5 9 9 C 1.47637 * 110.99861 * 29.43408 * 8 7 6 10 10 C 1.53651 * 88.14818 * 222.10054 * 9 8 7 11 11 C 1.46697 * 110.99728 * 293.75405 * 8 7 6 12 12 C 1.53064 * 120.99400 * 12.08604 * 11 8 7 13 13 C 1.53919 * 86.83967 * 209.64347 * 12 11 8 14 14 C 1.50702 * 113.66094 * 139.46675 * 13 12 11 15 15 N 1.30494 * 125.65431 * 167.30946 * 14 13 12 16 16 C 1.34127 * 109.26079 * 179.97438 * 15 14 13 17 17 C 1.34669 * 108.01778 * 0.02562 * 16 15 14 18 18 N 1.35042 * 125.64456 * 347.00471 * 14 13 12 19 19 C 1.53064 * 120.99167 * 264.01860 * 11 8 7 20 20 N 1.32498 * 121.56317 * 359.77721 * 7 6 5 21 21 C 1.32276 * 120.73810 * 359.97438 * 20 7 6 22 22 H 0.96697 * 113.99431 * 59.99927 * 1 2 3 23 23 H 1.08998 * 109.46907 * 120.00422 * 2 1 3 24 24 H 1.48504 * 109.99963 * 298.68304 * 3 2 1 25 25 H 1.48500 * 109.99980 * 60.00081 * 3 2 1 26 26 H 1.07999 * 120.40675 * 359.97438 * 5 4 2 27 27 H 1.08994 * 113.43938 * 336.92028 * 9 8 7 28 28 H 1.08996 * 113.43607 * 107.28199 * 9 8 7 29 29 H 1.08993 * 114.21170 * 271.76519 * 10 9 8 30 30 H 1.08998 * 114.38594 * 138.93675 * 10 9 8 31 31 H 1.09007 * 113.65324 * 324.12606 * 12 11 8 32 32 H 1.08997 * 113.65591 * 95.15291 * 12 11 8 33 33 H 1.09001 * 113.58520 * 270.26826 * 13 12 11 34 34 H 1.07995 * 125.99408 * 179.97438 * 16 15 14 35 35 H 1.08003 * 126.59260 * 180.02562 * 17 16 15 36 36 H 0.96997 * 126.40683 * 0.02562 * 18 14 13 37 37 H 1.09002 * 113.65440 * 264.84721 * 19 11 8 38 38 H 1.09006 * 113.65372 * 35.78395 * 19 11 8 39 39 H 1.08006 * 120.39875 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7244 -0.0496 -2.1554 6 7 3.1522 -0.7035 -3.2227 7 6 2.8230 -1.9721 -3.4168 8 7 3.2840 -2.6245 -4.5471 9 6 4.5788 -2.0687 -4.9876 10 6 4.0640 -2.1470 -6.4332 11 6 2.6949 -2.0510 -5.7620 12 6 1.9318 -0.7249 -5.7177 13 6 1.1022 -1.2608 -6.8983 14 6 -0.3668 -0.9389 -6.8006 15 7 -1.2393 -1.0674 -7.7625 16 6 -2.4469 -0.6891 -7.3180 17 6 -2.3177 -0.3113 -6.0319 18 7 -0.9994 -0.4750 -5.7014 19 6 1.4564 -2.6763 -6.4084 20 7 2.0627 -2.6311 -2.5547 21 6 1.6058 -2.0372 -1.4646 22 1 -0.3932 0.4417 -0.7650 23 1 1.7924 -0.5139 0.8899 24 1 1.5879 2.4585 -1.2242 25 1 1.5616 2.4678 1.2085 26 1 2.9923 0.9858 -2.0051 27 1 4.7524 -1.0490 -4.6439 28 1 5.4233 -2.7293 -4.7918 29 1 4.2550 -3.1010 -6.9246 30 1 4.3209 -1.2856 -7.0497 31 1 1.3529 -0.5837 -4.8049 32 1 2.5440 0.1407 -5.9707 33 1 1.5243 -1.0185 -7.8736 34 1 -3.3621 -0.6871 -7.8912 35 1 -3.1041 0.0470 -5.3841 36 1 -0.5949 -0.2898 -4.8395 37 1 1.6881 -3.3728 -7.2142 38 1 0.7453 -3.0823 -5.6888 39 1 0.9860 -2.5794 -0.7658 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15704104_12175864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:33:23 Heat of formation + Delta-G solvation = 177.962571 kcal Electronic energy + Delta-G solvation = -24880.095363 eV Core-core repulsion = 21407.920096 eV Total energy + Delta-G solvation = -3472.175268 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.55781 -42.90973 -41.38005 -38.28404 -37.28859 -34.99710 -33.74750 -33.54458 -30.64872 -30.11433 -27.19433 -26.43017 -26.15908 -25.82129 -23.46400 -23.27116 -22.29716 -21.40967 -20.00069 -19.29660 -19.21951 -18.26475 -18.08787 -17.09744 -16.68929 -16.37175 -16.30710 -16.21763 -16.03733 -15.54205 -15.01474 -14.83354 -14.74488 -14.63145 -14.14518 -13.89711 -13.60768 -13.35370 -13.18819 -12.87297 -12.64875 -12.32883 -12.30721 -12.07952 -11.86662 -11.79161 -11.41283 -11.14457 -11.13838 -11.02345 -10.61928 -10.48262 -9.86997 -9.44483 -4.98518 -0.49851 -0.10781 0.97609 1.18180 1.51698 1.91668 1.98751 2.04648 2.17750 2.35580 2.85129 3.11766 3.19401 3.26046 3.29034 3.39677 3.45694 3.48982 3.55355 3.70811 3.96642 4.03592 4.09892 4.15774 4.38279 4.39243 4.44252 4.46498 4.52754 4.57297 4.61775 4.70198 4.77813 4.81173 4.89677 4.96304 5.02045 5.08745 5.18705 5.20309 5.60906 5.69829 6.00156 6.29387 6.36146 6.90588 7.02397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.066 4.066 3 Si 0.761 3.239 4 C -0.221 4.221 5 C 0.162 3.838 6 N -0.533 5.533 7 C 0.452 3.548 8 N -0.431 5.431 9 C 0.009 3.991 10 C -0.104 4.104 11 C 0.056 3.944 12 C -0.111 4.111 13 C -0.018 4.018 14 C 0.211 3.789 15 N -0.525 5.525 16 C -0.057 4.057 17 C -0.047 4.047 18 N -0.562 5.562 19 C -0.104 4.104 20 N -0.526 5.526 21 C 0.175 3.825 22 H 0.387 0.613 23 H 0.136 0.864 24 H -0.272 1.272 25 H -0.298 1.298 26 H 0.196 0.804 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.182 0.818 35 H 0.209 0.791 36 H 0.422 0.578 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 4.536 2.843 6.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.176 4.176 3 Si 0.665 3.335 4 C -0.226 4.226 5 C -0.005 4.005 6 N -0.250 5.250 7 C 0.097 3.903 8 N -0.154 5.154 9 C -0.119 4.119 10 C -0.141 4.141 11 C -0.033 4.033 12 C -0.150 4.150 13 C -0.039 4.039 14 C -0.053 4.053 15 N -0.245 5.245 16 C -0.204 4.204 17 C -0.181 4.181 18 N -0.165 5.165 19 C -0.144 4.144 20 N -0.241 5.241 21 C 0.009 3.991 22 H 0.236 0.764 23 H 0.154 0.846 24 H -0.198 1.198 25 H -0.226 1.226 26 H 0.212 0.788 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.152 0.848 34 H 0.199 0.801 35 H 0.226 0.774 36 H 0.261 0.739 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.996 3.542 1.933 5.679 hybrid contribution -1.850 1.083 1.695 2.733 sum 2.146 4.626 3.628 6.258 Atomic orbital electron populations 1.86639 1.17921 1.80226 1.50137 1.25056 0.83657 1.11652 0.97242 0.94151 0.90205 0.71622 0.77544 1.22126 1.02568 0.97302 1.00578 1.23462 0.89506 1.00577 0.86978 1.68541 1.24636 1.09046 1.22827 1.21985 0.89852 0.85451 0.92982 1.66423 1.06934 1.43963 0.98045 1.23967 0.90991 1.01746 0.95173 1.23005 0.89935 1.05449 0.95758 1.23558 0.95789 0.94617 0.89374 1.23097 0.97507 0.97844 0.96592 1.20929 0.84359 0.97313 1.01300 1.23230 0.96720 1.02201 0.83188 1.70190 1.01382 1.22179 1.30757 1.22784 0.96841 1.06002 0.94759 1.23293 0.86604 1.09067 0.99149 1.43269 1.08949 1.50649 1.13676 1.22885 0.95631 0.95925 0.99913 1.68217 1.12063 1.39589 1.04182 1.23452 0.92202 0.91659 0.91825 0.76421 0.84607 1.19765 1.22608 0.78819 0.87791 0.88784 0.87259 0.87033 0.91706 0.87839 0.84787 0.80077 0.77431 0.73929 0.88795 0.91821 0.79959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.21 12.79 -148.98 -1.91 0.30 16 2 C -0.07 0.47 2.85 71.24 0.20 0.67 16 3 Si 0.76 -6.11 29.87 68.60 2.05 -4.07 16 4 C -0.22 1.06 5.40 -19.69 -0.11 0.95 16 5 C 0.16 -0.78 9.92 84.71 0.84 0.06 16 6 N -0.53 0.21 6.80 -197.98 -1.35 -1.13 16 7 C 0.45 1.73 5.80 261.48 1.52 3.25 16 8 N -0.43 -1.50 6.53 -701.87 -4.58 -6.09 16 9 C 0.01 -0.01 7.57 82.70 0.63 0.61 16 10 C -0.10 0.49 8.21 30.74 0.25 0.74 16 11 C 0.06 -0.03 1.14 -0.15 0.00 -0.03 16 12 C -0.11 0.22 5.71 30.93 0.18 0.39 16 13 C -0.02 -0.01 4.29 -10.92 -0.05 -0.06 16 14 C 0.21 1.21 7.36 138.13 1.02 2.23 16 15 N -0.52 -5.76 11.25 -188.14 -2.12 -7.88 16 16 C -0.06 -0.38 11.87 83.52 0.99 0.61 16 17 C -0.05 -0.07 12.04 83.08 1.00 0.93 16 18 N -0.56 -0.86 5.94 -186.26 -1.11 -1.97 16 19 C -0.10 -0.21 7.51 30.93 0.23 0.02 16 20 N -0.53 -2.99 10.47 -197.98 -2.07 -5.06 16 21 C 0.18 -0.04 10.92 84.71 0.93 0.89 16 22 H 0.39 -3.80 8.70 -74.06 -0.64 -4.44 16 23 H 0.14 -1.18 7.96 -2.39 -0.02 -1.20 16 24 H -0.27 1.43 7.11 99.48 0.71 2.14 16 25 H -0.30 -0.20 7.11 99.48 0.71 0.50 16 26 H 0.20 -2.06 5.04 -2.91 -0.01 -2.07 16 27 H 0.10 -0.22 6.61 -2.39 -0.02 -0.23 16 28 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.06 -0.04 5.29 -2.38 -0.01 -0.05 16 32 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 35 H 0.21 -1.27 8.06 -2.91 -0.02 -1.29 16 36 H 0.42 -1.18 7.53 -92.71 -0.70 -1.88 16 37 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.06 0.43 8.10 -2.38 -0.02 0.41 16 39 H 0.18 -0.55 8.06 -2.91 -0.02 -0.58 16 Total: 0.00 -21.51 320.70 -3.65 -25.16 By element: Atomic # 1 Polarization: -10.35 SS G_CDS: -0.20 Total: -10.55 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 7.63 Total: 11.27 kcal Atomic # 7 Polarization: -10.90 SS G_CDS: -11.22 Total: -22.12 kcal Atomic # 8 Polarization: 2.21 SS G_CDS: -1.91 Total: 0.30 kcal Atomic # 14 Polarization: -6.11 SS G_CDS: 2.05 Total: -4.07 kcal Total: -21.51 -3.65 -25.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15704104_12175864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.124 kcal (2) G-P(sol) polarization free energy of solvation -21.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds