Wall clock time and date at job start Mon Mar 8 2021 07:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86306 * 109.46845 * 2 1 4 4 C 1.50699 * 109.47347 * 239.99950 * 2 1 3 5 5 C 1.33323 * 125.95366 * 119.97419 * 4 2 1 6 6 N 1.32119 * 114.58100 * 180.02562 * 5 4 2 7 7 C 1.29691 * 116.86279 * 359.97438 * 6 5 4 8 8 N 1.38613 * 124.94639 * 179.97438 * 7 6 5 9 9 C 1.47643 * 110.99810 * 27.88045 * 8 7 6 10 10 C 1.53656 * 88.14713 * 222.09286 * 9 8 7 11 11 C 1.46689 * 111.00390 * 292.19638 * 8 7 6 12 12 C 1.53064 * 120.99673 * 264.01590 * 11 8 7 13 13 C 1.53921 * 86.83877 * 100.37161 * 12 11 8 14 14 C 1.50701 * 113.58542 * 139.45418 * 13 12 11 15 15 N 1.30493 * 125.65535 * 96.41376 * 14 13 12 16 16 C 1.34124 * 109.26200 * 180.02562 * 15 14 13 17 17 C 1.34671 * 108.01808 * 0.02562 * 16 15 14 18 18 N 1.35048 * 125.64662 * 276.44072 * 14 13 12 19 19 C 1.53231 * 120.92459 * 12.07156 * 11 8 7 20 20 S 1.70963 * 110.10383 * 0.24387 * 7 6 5 21 21 H 0.96707 * 114.00169 * 60.00168 * 1 2 3 22 22 H 1.08998 * 109.46732 * 119.99509 * 2 1 3 23 23 H 1.48491 * 110.00293 * 59.99823 * 3 2 1 24 24 H 1.48496 * 109.99581 * 181.32068 * 3 2 1 25 25 H 1.08007 * 122.71053 * 0.02562 * 5 4 2 26 26 H 1.08996 * 113.44259 * 336.91636 * 9 8 7 27 27 H 1.09003 * 113.43998 * 107.22236 * 9 8 7 28 28 H 1.08998 * 114.21232 * 271.76624 * 10 9 8 29 29 H 1.08998 * 114.20816 * 138.91996 * 10 9 8 30 30 H 1.09007 * 113.65177 * 345.88715 * 12 11 8 31 31 H 1.08997 * 113.73957 * 214.86968 * 12 11 8 32 32 H 1.08998 * 113.58706 * 270.18386 * 13 12 11 33 33 H 1.07999 * 125.99511 * 179.97438 * 16 15 14 34 34 H 1.08003 * 126.59076 * 179.97438 * 17 16 15 35 35 H 0.96995 * 126.40010 * 359.97438 * 18 14 13 36 36 H 1.08997 * 113.65203 * 145.10865 * 19 11 8 37 37 H 1.09000 * 113.70160 * 14.03789 * 19 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7007 -0.1799 -2.1813 6 7 3.0093 -1.0075 -3.1639 7 6 2.5361 -2.2124 -3.0856 8 7 2.7535 -3.2131 -4.0198 9 6 4.0391 -3.0145 -4.7183 10 6 3.3299 -3.3959 -6.0270 11 6 2.0869 -2.9015 -5.2888 12 6 0.7025 -3.4687 -5.6120 13 6 0.1384 -2.0965 -5.2024 14 6 -0.9739 -1.6107 -6.0956 15 7 -2.2507 -1.7426 -5.8607 16 6 -2.9451 -1.1937 -6.8684 17 6 -2.0650 -0.7035 -7.7622 18 7 -0.8144 -0.9672 -7.2721 19 6 1.5148 -1.5052 -5.5557 20 16 1.5991 -2.3847 -1.6661 21 1 -0.3934 0.4417 -0.7651 22 1 1.7922 -0.5138 0.8900 23 1 1.5614 2.4680 1.2084 24 1 3.5345 1.7703 -0.0322 25 1 3.0439 0.8437 -2.1509 26 1 4.3880 -1.9821 -4.6992 27 1 4.8096 -3.7250 -4.4187 28 1 3.3279 -4.4651 -6.2392 29 1 3.6136 -2.7847 -6.8837 30 1 0.3980 -4.2814 -4.9524 31 1 0.5596 -3.7030 -6.6669 32 1 -0.1081 -2.0249 -4.1430 33 1 -4.0212 -1.1528 -6.9495 34 1 -2.3006 -0.1990 -8.6876 35 1 0.0288 -0.7355 -7.6918 36 1 1.6011 -1.1887 -6.5952 37 1 1.8597 -0.7484 -4.8512 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15704104_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:33:29 Heat of formation + Delta-G solvation = 165.049737 kcal Electronic energy + Delta-G solvation = -23095.491369 eV Core-core repulsion = 19777.334316 eV Total energy + Delta-G solvation = -3318.157053 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.38502 -42.60749 -40.32912 -37.98189 -37.14241 -33.39035 -32.79975 -30.53370 -30.21136 -27.16693 -26.30682 -26.07429 -24.74927 -23.33369 -22.23991 -21.55503 -21.11742 -19.87259 -19.20537 -18.72392 -17.79768 -17.50826 -17.36256 -16.44534 -16.32422 -16.09075 -15.87989 -15.25581 -15.17074 -14.87314 -14.56895 -14.40743 -14.18008 -14.10903 -13.59902 -13.20519 -13.10643 -12.97916 -12.68468 -12.35716 -12.26667 -12.16047 -11.96685 -11.27353 -10.95627 -10.92481 -10.91199 -10.71989 -10.40957 -10.21816 -9.77879 -9.30253 -5.16914 -0.53576 0.02823 0.65440 1.10218 1.29121 1.50407 1.56148 1.86774 2.12182 2.21876 2.53755 2.94078 3.16681 3.27070 3.32225 3.39802 3.44786 3.62043 3.77957 3.94597 4.03148 4.13720 4.19506 4.24881 4.40462 4.43662 4.48622 4.51467 4.56986 4.60888 4.69832 4.73683 4.81635 4.89194 4.95905 5.04349 5.12032 5.22944 5.80505 5.84550 6.38910 6.39082 6.48748 7.19428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.033 4.033 3 Si 0.704 3.296 4 C -0.270 4.270 5 C 0.053 3.947 6 N -0.494 5.494 7 C 0.170 3.830 8 N -0.384 5.384 9 C 0.013 3.987 10 C -0.127 4.127 11 C 0.050 3.950 12 C -0.106 4.106 13 C -0.024 4.024 14 C 0.221 3.779 15 N -0.485 5.485 16 C -0.026 4.026 17 C -0.056 4.056 18 N -0.565 5.565 19 C -0.141 4.141 20 S 0.222 5.778 21 H 0.382 0.618 22 H 0.119 0.881 23 H -0.248 1.248 24 H -0.252 1.252 25 H 0.178 0.822 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.171 0.829 34 H 0.178 0.822 35 H 0.417 0.583 36 H 0.089 0.911 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 2.400 -4.547 5.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.145 4.145 3 Si 0.603 3.397 4 C -0.393 4.393 5 C -0.101 4.101 6 N -0.213 5.213 7 C -0.196 4.196 8 N -0.106 5.106 9 C -0.117 4.117 10 C -0.166 4.166 11 C -0.042 4.042 12 C -0.145 4.145 13 C -0.044 4.044 14 C -0.043 4.043 15 N -0.204 5.204 16 C -0.174 4.174 17 C -0.190 4.190 18 N -0.169 5.169 19 C -0.180 4.180 20 S 0.479 5.521 21 H 0.230 0.770 22 H 0.137 0.863 23 H -0.172 1.172 24 H -0.177 1.177 25 H 0.194 0.806 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.188 0.812 34 H 0.195 0.805 35 H 0.255 0.745 36 H 0.107 0.893 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.767 0.964 -2.460 3.178 hybrid contribution 1.206 1.491 -1.108 2.214 sum 2.972 2.455 -3.567 5.252 Atomic orbital electron populations 1.86541 1.16568 1.81634 1.49362 1.24583 0.85434 1.09808 0.94716 0.94638 0.80931 0.76297 0.87825 1.26648 1.09177 0.98728 1.04708 1.21479 0.98386 1.00614 0.89580 1.66955 1.25008 1.01747 1.27543 1.25596 1.01065 0.92303 1.00675 1.66840 1.07895 1.32190 1.03660 1.23886 0.91775 1.03625 0.92387 1.23053 0.93704 1.02948 0.96855 1.23265 0.95101 0.96926 0.88901 1.22935 0.92182 0.96511 1.02827 1.20987 0.88427 0.96740 0.98289 1.22853 0.93778 0.99936 0.87742 1.70252 1.01608 1.21643 1.26937 1.22420 1.00046 1.02725 0.92242 1.22813 0.83834 1.09295 1.03049 1.43257 1.09074 1.45582 1.18992 1.23501 0.94247 0.97017 1.03260 1.84288 1.45148 1.07890 1.14793 0.77038 0.86336 1.17187 1.17670 0.80564 0.88281 0.88778 0.87938 0.89459 0.89323 0.88467 0.86871 0.81166 0.80477 0.74518 0.89257 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.00 12.88 -35.23 -0.45 -0.45 16 2 C -0.03 0.02 3.08 36.00 0.11 0.13 16 3 Si 0.70 -1.31 30.49 -169.99 -5.18 -6.49 16 4 C -0.27 -0.02 5.93 -36.03 -0.21 -0.23 16 5 C 0.05 0.00 10.07 -19.14 -0.19 -0.19 16 6 N -0.49 -0.55 7.01 -15.21 -0.11 -0.66 16 7 C 0.17 0.21 5.29 -87.67 -0.46 -0.26 16 8 N -0.38 -0.24 6.53 -173.07 -1.13 -1.37 16 9 C 0.01 -0.01 7.63 -8.76 -0.07 -0.08 16 10 C -0.13 0.28 8.21 -26.50 -0.22 0.06 16 11 C 0.05 -0.05 1.21 -137.36 -0.17 -0.21 16 12 C -0.11 0.05 7.51 -26.22 -0.20 -0.14 16 13 C -0.02 -0.01 4.04 -90.82 -0.37 -0.37 16 14 C 0.22 0.39 7.36 -155.42 -1.14 -0.75 16 15 N -0.49 -2.14 11.25 -10.82 -0.12 -2.26 16 16 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 17 C -0.06 0.01 12.04 -16.56 -0.20 -0.19 16 18 N -0.57 0.33 5.94 -10.23 -0.06 0.27 16 19 C -0.14 0.18 6.70 -26.13 -0.18 0.01 16 20 S 0.22 0.24 23.21 -107.50 -2.50 -2.26 16 21 H 0.38 -1.36 8.70 45.56 0.40 -0.96 16 22 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 23 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 24 H -0.25 -0.09 7.11 56.52 0.40 0.32 16 25 H 0.18 -0.38 5.85 -52.48 -0.31 -0.69 16 26 H 0.10 0.00 6.91 -51.93 -0.36 -0.36 16 27 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 29 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 30 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.10 -0.12 8.09 -51.93 -0.42 -0.54 16 32 H 0.11 0.17 8.01 -51.93 -0.42 -0.24 16 33 H 0.17 0.05 8.06 -52.49 -0.42 -0.37 16 34 H 0.18 -0.58 8.06 -52.48 -0.42 -1.00 16 35 H 0.42 -1.42 7.54 -40.82 -0.31 -1.73 16 36 H 0.09 -0.27 6.63 -51.93 -0.34 -0.62 16 37 H 0.10 0.00 5.40 -51.93 -0.28 -0.28 16 LS Contribution 316.23 15.07 4.77 4.77 Total: 0.00 -7.63 316.23 -12.47 -20.11 By element: Atomic # 1 Polarization: -4.97 SS G_CDS: -4.19 Total: -9.16 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.50 Total: -2.50 kcal Atomic # 7 Polarization: -2.60 SS G_CDS: -1.42 Total: -4.02 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -0.45 Total: -0.45 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.18 Total: -6.49 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.50 Total: -2.26 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -7.63 -12.47 -20.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15704104_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.159 kcal (2) G-P(sol) polarization free energy of solvation -7.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds