Wall clock time and date at job start Mon Mar 8 2021 07:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86306 * 109.46845 * 2 1 4 4 C 1.50699 * 109.47347 * 239.99950 * 2 1 3 5 5 C 1.33323 * 125.95366 * 119.97419 * 4 2 1 6 6 N 1.32119 * 114.58100 * 180.02562 * 5 4 2 7 7 C 1.29691 * 116.86279 * 359.97438 * 6 5 4 8 8 N 1.38613 * 124.94639 * 179.97438 * 7 6 5 9 9 C 1.47643 * 110.99810 * 27.88045 * 8 7 6 10 10 C 1.53656 * 88.14713 * 222.09286 * 9 8 7 11 11 C 1.46689 * 111.00390 * 292.19638 * 8 7 6 12 12 C 1.53064 * 120.99673 * 264.01590 * 11 8 7 13 13 C 1.53921 * 86.83877 * 100.37161 * 12 11 8 14 14 C 1.50701 * 113.58542 * 139.45418 * 13 12 11 15 15 N 1.30493 * 125.65535 * 96.41376 * 14 13 12 16 16 C 1.34124 * 109.26200 * 180.02562 * 15 14 13 17 17 C 1.34671 * 108.01808 * 0.02562 * 16 15 14 18 18 N 1.35048 * 125.64662 * 276.44072 * 14 13 12 19 19 C 1.53231 * 120.92459 * 12.07156 * 11 8 7 20 20 S 1.70963 * 110.10383 * 0.24387 * 7 6 5 21 21 H 0.96707 * 114.00169 * 60.00168 * 1 2 3 22 22 H 1.08998 * 109.46732 * 119.99509 * 2 1 3 23 23 H 1.48491 * 110.00293 * 59.99823 * 3 2 1 24 24 H 1.48496 * 109.99581 * 181.32068 * 3 2 1 25 25 H 1.08007 * 122.71053 * 0.02562 * 5 4 2 26 26 H 1.08996 * 113.44259 * 336.91636 * 9 8 7 27 27 H 1.09003 * 113.43998 * 107.22236 * 9 8 7 28 28 H 1.08998 * 114.21232 * 271.76624 * 10 9 8 29 29 H 1.08998 * 114.20816 * 138.91996 * 10 9 8 30 30 H 1.09007 * 113.65177 * 345.88715 * 12 11 8 31 31 H 1.08997 * 113.73957 * 214.86968 * 12 11 8 32 32 H 1.08998 * 113.58706 * 270.18386 * 13 12 11 33 33 H 1.07999 * 125.99511 * 179.97438 * 16 15 14 34 34 H 1.08003 * 126.59076 * 179.97438 * 17 16 15 35 35 H 0.96995 * 126.40010 * 359.97438 * 18 14 13 36 36 H 1.08997 * 113.65203 * 145.10865 * 19 11 8 37 37 H 1.09000 * 113.70160 * 14.03789 * 19 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7007 -0.1799 -2.1813 6 7 3.0093 -1.0075 -3.1639 7 6 2.5361 -2.2124 -3.0856 8 7 2.7535 -3.2131 -4.0198 9 6 4.0391 -3.0145 -4.7183 10 6 3.3299 -3.3959 -6.0270 11 6 2.0869 -2.9015 -5.2888 12 6 0.7025 -3.4687 -5.6120 13 6 0.1384 -2.0965 -5.2024 14 6 -0.9739 -1.6107 -6.0956 15 7 -2.2507 -1.7426 -5.8607 16 6 -2.9451 -1.1937 -6.8684 17 6 -2.0650 -0.7035 -7.7622 18 7 -0.8144 -0.9672 -7.2721 19 6 1.5148 -1.5052 -5.5557 20 16 1.5991 -2.3847 -1.6661 21 1 -0.3934 0.4417 -0.7651 22 1 1.7922 -0.5138 0.8900 23 1 1.5614 2.4680 1.2084 24 1 3.5345 1.7703 -0.0322 25 1 3.0439 0.8437 -2.1509 26 1 4.3880 -1.9821 -4.6992 27 1 4.8096 -3.7250 -4.4187 28 1 3.3279 -4.4651 -6.2392 29 1 3.6136 -2.7847 -6.8837 30 1 0.3980 -4.2814 -4.9524 31 1 0.5596 -3.7030 -6.6669 32 1 -0.1081 -2.0249 -4.1430 33 1 -4.0212 -1.1528 -6.9495 34 1 -2.3006 -0.1990 -8.6876 35 1 0.0288 -0.7355 -7.6918 36 1 1.6011 -1.1887 -6.5952 37 1 1.8597 -0.7484 -4.8512 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15704104_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:33:28 Heat of formation + Delta-G solvation = 165.173742 kcal Electronic energy + Delta-G solvation = -23095.485992 eV Core-core repulsion = 19777.334316 eV Total energy + Delta-G solvation = -3318.151676 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.37498 -42.60734 -40.32590 -37.96638 -37.10930 -33.45115 -32.77845 -30.54033 -30.18143 -27.10486 -26.28332 -26.04718 -24.75143 -23.30005 -22.25522 -21.54375 -21.12784 -19.88190 -19.16457 -18.68773 -17.78609 -17.48300 -17.35708 -16.39126 -16.31364 -16.07579 -15.86865 -15.28445 -15.17274 -14.84948 -14.57384 -14.37325 -14.15905 -14.11776 -13.50975 -13.14997 -13.10049 -12.83792 -12.62320 -12.32524 -12.28728 -12.17064 -11.93332 -11.20498 -11.02849 -11.01706 -10.93404 -10.70127 -10.40482 -10.26628 -9.78621 -9.33273 -5.05341 -0.56105 0.00807 0.63840 1.09508 1.35101 1.53298 1.60935 1.92567 2.12713 2.18819 2.58427 2.99731 3.24466 3.34632 3.39044 3.44613 3.52584 3.64082 3.82192 4.01216 4.11184 4.20836 4.25156 4.34425 4.43089 4.50885 4.54735 4.55550 4.65208 4.67164 4.79836 4.82965 4.90307 4.94844 5.01440 5.11654 5.16956 5.25307 5.79466 5.85792 6.44189 6.49154 6.60182 7.14978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.044 4.044 3 Si 0.799 3.201 4 C -0.266 4.266 5 C 0.049 3.951 6 N -0.499 5.499 7 C 0.172 3.828 8 N -0.401 5.401 9 C 0.010 3.990 10 C -0.114 4.114 11 C 0.050 3.950 12 C -0.103 4.103 13 C -0.024 4.024 14 C 0.212 3.788 15 N -0.533 5.533 16 C -0.063 4.063 17 C -0.039 4.039 18 N -0.554 5.554 19 C -0.129 4.129 20 S 0.186 5.814 21 H 0.396 0.604 22 H 0.112 0.888 23 H -0.290 1.290 24 H -0.276 1.276 25 H 0.199 0.801 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.177 0.823 34 H 0.212 0.788 35 H 0.432 0.568 36 H 0.112 0.888 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 3.296 -6.381 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.155 4.155 3 Si 0.701 3.299 4 C -0.388 4.388 5 C -0.104 4.104 6 N -0.218 5.218 7 C -0.195 4.195 8 N -0.124 5.124 9 C -0.119 4.119 10 C -0.152 4.152 11 C -0.041 4.041 12 C -0.142 4.142 13 C -0.045 4.045 14 C -0.052 4.052 15 N -0.253 5.253 16 C -0.210 4.210 17 C -0.173 4.173 18 N -0.159 5.159 19 C -0.168 4.168 20 S 0.442 5.558 21 H 0.246 0.754 22 H 0.129 0.871 23 H -0.217 1.217 24 H -0.202 1.202 25 H 0.216 0.784 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.195 0.805 34 H 0.229 0.771 35 H 0.273 0.727 36 H 0.130 0.870 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.619 1.846 -4.327 5.384 hybrid contribution 0.902 1.197 -0.504 1.581 sum 3.521 3.043 -4.831 6.708 Atomic orbital electron populations 1.86505 1.16942 1.82129 1.50449 1.24852 0.85331 1.11105 0.94174 0.93525 0.77866 0.73083 0.85436 1.26693 1.09238 0.97832 1.05004 1.21829 0.98035 1.01399 0.89151 1.66999 1.25161 1.01756 1.27862 1.25669 1.00745 0.92520 1.00547 1.66855 1.08907 1.32350 1.04271 1.23920 0.91407 1.03381 0.93227 1.23064 0.91913 1.03578 0.96638 1.23293 0.95254 0.97080 0.88449 1.22930 0.92532 0.95677 1.03060 1.20917 0.88881 0.97585 0.97074 1.22968 0.93343 1.00264 0.88640 1.70176 1.03193 1.23290 1.28640 1.22748 1.01018 1.04307 0.92961 1.23300 0.83288 1.07495 1.03218 1.43218 1.09798 1.44638 1.18214 1.23462 0.92645 0.96432 1.04265 1.84388 1.46091 1.09531 1.15774 0.75374 0.87069 1.21712 1.20237 0.78445 0.88821 0.88672 0.87418 0.87497 0.90751 0.87412 0.88868 0.80547 0.77107 0.72730 0.86955 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.48 12.88 -148.98 -1.92 -2.40 16 2 C -0.04 0.02 3.08 71.24 0.22 0.24 16 3 Si 0.80 -2.98 30.49 68.60 2.09 -0.89 16 4 C -0.27 -0.25 5.93 24.57 0.15 -0.10 16 5 C 0.05 0.00 10.07 83.54 0.84 0.84 16 6 N -0.50 -1.21 7.01 -202.02 -1.42 -2.63 16 7 C 0.17 0.56 5.29 179.32 0.95 1.51 16 8 N -0.40 -0.71 6.53 -701.47 -4.58 -5.30 16 9 C 0.01 -0.02 7.63 82.70 0.63 0.61 16 10 C -0.11 0.65 8.21 30.74 0.25 0.90 16 11 C 0.05 -0.11 1.21 -0.09 0.00 -0.11 16 12 C -0.10 0.07 7.51 30.93 0.23 0.30 16 13 C -0.02 -0.03 4.04 -10.92 -0.04 -0.07 16 14 C 0.21 0.82 7.36 138.13 1.02 1.84 16 15 N -0.53 -5.37 11.25 -188.13 -2.12 -7.48 16 16 C -0.06 -0.32 11.87 83.52 0.99 0.67 16 17 C -0.04 0.06 12.04 83.09 1.00 1.06 16 18 N -0.55 1.28 5.94 -186.27 -1.11 0.18 16 19 C -0.13 0.41 6.70 30.98 0.21 0.62 16 20 S 0.19 0.72 23.21 -56.49 -1.31 -0.59 16 21 H 0.40 -2.58 8.70 -74.05 -0.64 -3.22 16 22 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 23 H -0.29 -0.98 7.11 99.48 0.71 -0.27 16 24 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 25 H 0.20 -1.03 5.85 -2.91 -0.02 -1.05 16 26 H 0.09 -0.04 6.91 -2.39 -0.02 -0.06 16 27 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.07 0.16 8.14 -2.38 -0.02 0.15 16 31 H 0.11 -0.31 8.09 -2.39 -0.02 -0.33 16 32 H 0.09 0.48 8.01 -2.39 -0.02 0.46 16 33 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 34 H 0.21 -1.93 8.06 -2.91 -0.02 -1.96 16 35 H 0.43 -3.86 7.54 -92.71 -0.70 -4.56 16 36 H 0.11 -0.92 6.63 -2.39 -0.02 -0.93 16 37 H 0.09 -0.04 5.40 -2.39 -0.01 -0.05 16 Total: 0.00 -19.53 316.23 -4.09 -23.62 By element: Atomic # 1 Polarization: -12.65 SS G_CDS: -0.17 Total: -12.82 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.44 Total: 8.31 kcal Atomic # 7 Polarization: -6.01 SS G_CDS: -9.22 Total: -15.23 kcal Atomic # 8 Polarization: -0.48 SS G_CDS: -1.92 Total: -2.40 kcal Atomic # 14 Polarization: -2.98 SS G_CDS: 2.09 Total: -0.89 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.31 Total: -0.59 kcal Total: -19.53 -4.09 -23.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15704104_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.797 kcal (2) G-P(sol) polarization free energy of solvation -19.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds