Wall clock time and date at job start Mon Mar 8 2021 07:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33331 * 125.95248 * 2 1 4 4 C 1.50705 * 122.70671 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47493 * 330.00446 * 4 3 2 6 6 Si 1.86299 * 109.47066 * 209.99798 * 4 3 2 7 7 N 1.32114 * 114.58158 * 179.75619 * 3 2 1 8 8 C 1.29686 * 116.86573 * 0.47169 * 7 3 2 9 9 N 1.38610 * 124.95159 * 179.81979 * 8 7 3 10 10 C 1.47636 * 110.99991 * 29.42134 * 9 8 7 11 11 C 1.53647 * 88.14816 * 222.10083 * 10 9 8 12 12 C 1.46697 * 110.99763 * 293.73756 * 9 8 7 13 13 C 1.53068 * 120.99425 * 264.02155 * 12 9 8 14 14 C 1.53919 * 86.93585 * 150.40484 * 13 12 9 15 15 C 1.50705 * 113.58220 * 220.41819 * 14 13 12 16 16 N 1.30496 * 125.64926 * 265.02568 * 15 14 13 17 17 C 1.34129 * 109.25541 * 180.02562 * 16 15 14 18 18 C 1.34668 * 108.02081 * 0.02562 * 17 16 15 19 19 N 1.35042 * 125.64822 * 84.72607 * 15 14 13 20 20 C 1.53354 * 121.09425 * 12.01883 * 12 9 8 21 21 S 1.70972 * 110.10144 * 359.54815 * 8 7 3 22 22 H 1.08995 * 109.47241 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47036 * 299.97598 * 1 2 3 24 24 H 1.09002 * 109.47186 * 59.97124 * 1 2 3 25 25 H 1.09000 * 109.46718 * 90.00122 * 4 3 2 26 26 H 0.96695 * 113.99959 * 180.02562 * 5 4 3 27 27 H 1.48499 * 110.00121 * 298.68586 * 6 4 3 28 28 H 1.48504 * 109.99988 * 60.00485 * 6 4 3 29 29 H 1.08999 * 113.44009 * 336.92194 * 10 9 8 30 30 H 1.08999 * 113.43833 * 107.22913 * 10 9 8 31 31 H 1.09003 * 114.21105 * 271.76769 * 11 10 9 32 32 H 1.08997 * 114.21439 * 138.92836 * 11 10 9 33 33 H 1.08999 * 113.65191 * 35.87538 * 13 12 9 34 34 H 1.08995 * 113.65150 * 264.93741 * 13 12 9 35 35 H 1.08998 * 113.58518 * 89.68712 * 14 13 12 36 36 H 1.07997 * 125.99032 * 179.97438 * 17 16 15 37 37 H 1.07994 * 126.59257 * 180.02562 * 18 17 16 38 38 H 0.96993 * 126.39703 * 359.97438 * 19 15 14 39 39 H 1.09004 * 113.65074 * 95.18940 * 20 12 9 40 40 H 1.08997 * 113.73994 * 324.17812 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5020 -0.6746 6 14 2.9325 3.6148 -0.8786 7 7 3.5850 0.8189 0.0051 8 6 3.9315 -0.4309 -0.0001 9 7 5.2384 -0.8925 0.0004 10 6 6.1358 0.0600 0.6838 11 6 7.1608 -0.1796 -0.4354 12 6 5.9203 -0.5419 -1.2503 13 6 6.0034 -1.5386 -2.4090 14 6 6.0281 -0.3190 -3.3476 15 6 5.2019 -0.5013 -4.5948 16 7 5.6494 -0.9096 -5.7506 17 6 4.6354 -0.9517 -6.6277 18 6 3.5173 -0.5538 -5.9912 19 7 3.8748 -0.2745 -4.6998 20 6 5.3034 0.4590 -2.2349 21 16 2.5413 -1.4261 0.0000 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5135 0.8902 24 1 -0.3634 0.5143 -0.8897 25 1 1.6088 2.8217 1.0270 26 1 0.0693 3.3759 -0.7134 27 1 4.2370 3.6285 -0.1690 28 1 3.1218 3.1638 -2.2808 29 1 5.7496 1.0790 0.7072 30 1 6.4714 -0.2856 1.6615 31 1 7.8352 -1.0162 -0.2523 32 1 7.6711 0.7218 -0.7748 33 1 5.1125 -2.1569 -2.5187 34 1 6.9261 -2.1187 -2.4213 35 1 7.0321 0.0509 -3.5558 36 1 4.7039 -1.2513 -7.6630 37 1 2.5276 -0.4760 -6.4164 38 1 3.2856 0.0320 -3.9929 39 1 5.6664 1.4789 -2.1067 40 1 4.2168 0.4007 -2.2969 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15704104_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:33:32 Heat of formation + Delta-G solvation = 156.579735 kcal Electronic energy + Delta-G solvation = -25574.210511 eV Core-core repulsion = 22100.148552 eV Total energy + Delta-G solvation = -3474.061959 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.36016 -42.59631 -40.72459 -37.91035 -37.16914 -33.66565 -33.37560 -31.10994 -30.39736 -28.91328 -27.15880 -26.13211 -25.77943 -24.24781 -23.34519 -22.19986 -21.35266 -20.59174 -19.60448 -19.17502 -18.89930 -18.20862 -17.48910 -16.94413 -16.69026 -16.25801 -16.00053 -15.89789 -15.41135 -14.96009 -14.81981 -14.59483 -14.32807 -14.27401 -13.98206 -13.88629 -13.67289 -13.39949 -13.20436 -13.14683 -12.97592 -12.64073 -12.35395 -12.23441 -11.93484 -11.86953 -11.46177 -11.04702 -10.94298 -10.93524 -10.70733 -10.37407 -10.20936 -9.52468 -9.30865 -5.01785 -0.49183 0.05900 0.61460 1.10107 1.10499 1.54535 1.66191 2.10102 2.10514 2.21118 2.42434 2.77479 3.09699 3.17992 3.22586 3.48012 3.63169 3.68038 3.82397 3.94612 4.02741 4.10134 4.13078 4.21965 4.28752 4.40904 4.43484 4.49915 4.52044 4.58953 4.64936 4.66171 4.70483 4.73105 4.79921 4.86769 4.90684 5.00053 5.10215 5.15234 5.21471 5.78362 5.83916 6.36386 6.39493 6.45173 7.17827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.195 4.195 3 C 0.062 3.938 4 C -0.034 4.034 5 O -0.546 6.546 6 Si 0.706 3.294 7 N -0.490 5.490 8 C 0.176 3.824 9 N -0.392 5.392 10 C 0.012 3.988 11 C -0.116 4.116 12 C 0.049 3.951 13 C -0.102 4.102 14 C -0.021 4.021 15 C 0.220 3.780 16 N -0.483 5.483 17 C -0.025 4.025 18 C -0.056 4.056 19 N -0.566 5.566 20 C -0.124 4.124 21 S 0.182 5.818 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.387 0.613 27 H -0.248 1.248 28 H -0.262 1.262 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.414 0.586 39 H 0.084 0.916 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 3.746 2.264 5.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.317 4.317 3 C -0.070 4.070 4 C -0.146 4.146 5 O -0.352 6.352 6 Si 0.606 3.394 7 N -0.210 5.210 8 C -0.191 4.191 9 N -0.113 5.113 10 C -0.117 4.117 11 C -0.154 4.154 12 C -0.043 4.043 13 C -0.141 4.141 14 C -0.042 4.042 15 C -0.044 4.044 16 N -0.203 5.203 17 C -0.173 4.173 18 C -0.189 4.189 19 N -0.169 5.169 20 C -0.164 4.164 21 S 0.438 5.562 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.236 0.764 27 H -0.173 1.173 28 H -0.187 1.187 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.190 0.810 37 H 0.195 0.805 38 H 0.252 0.748 39 H 0.102 0.898 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.676 1.510 1.803 2.888 hybrid contribution -1.764 1.317 0.590 2.279 sum -3.440 2.827 2.393 5.055 Atomic orbital electron populations 1.20250 0.85780 1.02022 1.04476 1.25800 1.02362 0.93904 1.09611 1.19127 0.87130 0.95465 1.05260 1.23952 0.93057 0.95966 1.01635 1.86400 1.33917 1.35941 1.78989 0.95843 0.79220 0.85244 0.79095 1.66370 1.17339 1.19107 1.18162 1.25157 0.99120 0.90050 1.04807 1.66827 0.95106 1.40359 1.09030 1.23871 0.91809 0.96791 0.99241 1.22997 0.94889 1.03232 0.94305 1.23634 0.94841 0.96913 0.88878 1.22923 1.04090 0.95733 0.91348 1.20838 0.98698 0.98199 0.86427 1.22838 0.81777 1.03538 0.96283 1.70244 1.31556 1.19084 0.99378 1.22413 0.88525 1.06181 1.00202 1.22821 1.01802 1.09734 0.84587 1.43292 1.09897 1.52149 1.11600 1.23246 0.99838 0.99247 0.94053 1.84159 0.95795 1.09114 1.67085 0.92008 0.90215 0.88663 0.90133 0.76443 1.17291 1.18713 0.88706 0.88652 0.87474 0.89161 0.89536 0.88933 0.85615 0.81025 0.80494 0.74822 0.89756 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.03 8.91 36.00 0.32 0.35 16 2 C -0.20 -0.30 6.50 -36.02 -0.23 -0.53 16 3 C 0.06 0.13 5.95 -84.18 -0.50 -0.37 16 4 C -0.03 0.02 2.93 36.01 0.11 0.12 16 5 O -0.55 1.12 9.80 -35.23 -0.35 0.78 16 6 Si 0.71 -0.45 32.09 -169.99 -5.45 -5.90 16 7 N -0.49 -1.37 6.15 -11.36 -0.07 -1.44 16 8 C 0.18 0.44 5.33 -87.68 -0.47 -0.03 16 9 N -0.39 -0.69 6.53 -172.99 -1.13 -1.82 16 10 C 0.01 0.01 7.63 -8.76 -0.07 -0.06 16 11 C -0.12 0.12 8.21 -26.51 -0.22 -0.10 16 12 C 0.05 0.03 1.16 -137.29 -0.16 -0.13 16 13 C -0.10 -0.07 7.50 -26.22 -0.20 -0.27 16 14 C -0.02 -0.03 4.29 -90.82 -0.39 -0.42 16 15 C 0.22 0.76 7.36 -155.42 -1.14 -0.39 16 16 N -0.48 -2.65 11.25 -10.82 -0.12 -2.78 16 17 C -0.03 -0.09 11.87 -17.81 -0.21 -0.30 16 18 C -0.06 -0.09 12.04 -16.56 -0.20 -0.29 16 19 N -0.57 -1.15 5.94 -10.23 -0.06 -1.21 16 20 C -0.12 -0.14 5.93 -26.07 -0.15 -0.30 16 21 S 0.18 0.29 23.21 -107.50 -2.50 -2.20 16 22 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 23 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 24 H 0.09 -0.03 6.73 -51.93 -0.35 -0.38 16 25 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.39 -2.60 8.74 45.56 0.40 -2.21 16 27 H -0.25 -0.65 7.11 56.52 0.40 -0.25 16 28 H -0.26 -0.73 7.11 56.52 0.40 -0.33 16 29 H 0.09 0.17 6.94 -51.93 -0.36 -0.19 16 30 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 32 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 33 H 0.09 0.15 8.09 -51.93 -0.42 -0.27 16 34 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.17 0.21 8.06 -52.49 -0.42 -0.22 16 37 H 0.18 -0.27 8.06 -52.49 -0.42 -0.69 16 38 H 0.41 0.29 7.53 -40.82 -0.31 -0.02 16 39 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.08 0.17 5.29 -51.93 -0.27 -0.11 16 LS Contribution 337.33 15.07 5.08 5.08 Total: 0.00 -7.87 337.33 -13.26 -21.14 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: -5.15 Total: -8.92 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.51 Total: -2.72 kcal Atomic # 7 Polarization: -5.87 SS G_CDS: -1.38 Total: -7.25 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: -0.35 Total: 0.78 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: -5.45 Total: -5.90 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.50 Total: -2.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -7.87 -13.26 -21.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15704104_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.715 kcal (2) G-P(sol) polarization free energy of solvation -7.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds