Wall clock time and date at job start Mon Mar 8 2021 07:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33331 * 125.95248 * 2 1 4 4 C 1.50705 * 122.70671 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47493 * 330.00446 * 4 3 2 6 6 Si 1.86299 * 109.47066 * 209.99798 * 4 3 2 7 7 N 1.32114 * 114.58158 * 179.75619 * 3 2 1 8 8 C 1.29686 * 116.86573 * 0.47169 * 7 3 2 9 9 N 1.38610 * 124.95159 * 179.81979 * 8 7 3 10 10 C 1.47636 * 110.99991 * 29.42134 * 9 8 7 11 11 C 1.53647 * 88.14816 * 222.10083 * 10 9 8 12 12 C 1.46697 * 110.99763 * 293.73756 * 9 8 7 13 13 C 1.53068 * 120.99425 * 264.02155 * 12 9 8 14 14 C 1.53919 * 86.93585 * 150.40484 * 13 12 9 15 15 C 1.50705 * 113.58220 * 220.41819 * 14 13 12 16 16 N 1.30496 * 125.64926 * 265.02568 * 15 14 13 17 17 C 1.34129 * 109.25541 * 180.02562 * 16 15 14 18 18 C 1.34668 * 108.02081 * 0.02562 * 17 16 15 19 19 N 1.35042 * 125.64822 * 84.72607 * 15 14 13 20 20 C 1.53354 * 121.09425 * 12.01883 * 12 9 8 21 21 S 1.70972 * 110.10144 * 359.54815 * 8 7 3 22 22 H 1.08995 * 109.47241 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47036 * 299.97598 * 1 2 3 24 24 H 1.09002 * 109.47186 * 59.97124 * 1 2 3 25 25 H 1.09000 * 109.46718 * 90.00122 * 4 3 2 26 26 H 0.96695 * 113.99959 * 180.02562 * 5 4 3 27 27 H 1.48499 * 110.00121 * 298.68586 * 6 4 3 28 28 H 1.48504 * 109.99988 * 60.00485 * 6 4 3 29 29 H 1.08999 * 113.44009 * 336.92194 * 10 9 8 30 30 H 1.08999 * 113.43833 * 107.22913 * 10 9 8 31 31 H 1.09003 * 114.21105 * 271.76769 * 11 10 9 32 32 H 1.08997 * 114.21439 * 138.92836 * 11 10 9 33 33 H 1.08999 * 113.65191 * 35.87538 * 13 12 9 34 34 H 1.08995 * 113.65150 * 264.93741 * 13 12 9 35 35 H 1.08998 * 113.58518 * 89.68712 * 14 13 12 36 36 H 1.07997 * 125.99032 * 179.97438 * 17 16 15 37 37 H 1.07994 * 126.59257 * 180.02562 * 18 17 16 38 38 H 0.96993 * 126.39703 * 359.97438 * 19 15 14 39 39 H 1.09004 * 113.65074 * 95.18940 * 20 12 9 40 40 H 1.08997 * 113.73994 * 324.17812 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5020 -0.6746 6 14 2.9325 3.6148 -0.8786 7 7 3.5850 0.8189 0.0051 8 6 3.9315 -0.4309 -0.0001 9 7 5.2384 -0.8925 0.0004 10 6 6.1358 0.0600 0.6838 11 6 7.1608 -0.1796 -0.4354 12 6 5.9203 -0.5419 -1.2503 13 6 6.0034 -1.5386 -2.4090 14 6 6.0281 -0.3190 -3.3476 15 6 5.2019 -0.5013 -4.5948 16 7 5.6494 -0.9096 -5.7506 17 6 4.6354 -0.9517 -6.6277 18 6 3.5173 -0.5538 -5.9912 19 7 3.8748 -0.2745 -4.6998 20 6 5.3034 0.4590 -2.2349 21 16 2.5413 -1.4261 0.0000 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5135 0.8902 24 1 -0.3634 0.5143 -0.8897 25 1 1.6088 2.8217 1.0270 26 1 0.0693 3.3759 -0.7134 27 1 4.2370 3.6285 -0.1690 28 1 3.1218 3.1638 -2.2808 29 1 5.7496 1.0790 0.7072 30 1 6.4714 -0.2856 1.6615 31 1 7.8352 -1.0162 -0.2523 32 1 7.6711 0.7218 -0.7748 33 1 5.1125 -2.1569 -2.5187 34 1 6.9261 -2.1187 -2.4213 35 1 7.0321 0.0509 -3.5558 36 1 4.7039 -1.2513 -7.6630 37 1 2.5276 -0.4760 -6.4164 38 1 3.2856 0.0320 -3.9929 39 1 5.6664 1.4789 -2.1067 40 1 4.2168 0.4007 -2.2969 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15704104_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:33:31 Heat of formation + Delta-G solvation = 158.109538 kcal Electronic energy + Delta-G solvation = -25574.144174 eV Core-core repulsion = 22100.148552 eV Total energy + Delta-G solvation = -3473.995622 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.49020 -42.72084 -40.78841 -37.86139 -37.18327 -33.70952 -33.57011 -31.14514 -30.53785 -28.90076 -27.25295 -26.22609 -25.80894 -24.28377 -23.44851 -22.36261 -21.51303 -20.66262 -19.65668 -19.30431 -18.92143 -18.17221 -17.53095 -17.04066 -16.74893 -16.36164 -16.06893 -15.88905 -15.50163 -15.03417 -14.93101 -14.73151 -14.39300 -14.30156 -14.01763 -13.97038 -13.70667 -13.46196 -13.22162 -13.14588 -12.97782 -12.68786 -12.42762 -12.38771 -12.00675 -11.88557 -11.51343 -11.19886 -11.19026 -11.13459 -10.68787 -10.46738 -10.26236 -9.58251 -9.48271 -5.02501 -0.59261 -0.02668 0.52207 0.93404 1.08077 1.50433 1.61577 1.96351 2.00090 2.07971 2.39073 2.75565 3.02472 3.14501 3.17506 3.41629 3.54634 3.71956 3.84926 3.88369 3.99440 4.03504 4.10750 4.24464 4.27956 4.29838 4.34995 4.40384 4.49816 4.52151 4.59275 4.64912 4.73302 4.74316 4.79165 4.81711 4.88286 4.97191 5.03018 5.08488 5.20945 5.66160 5.71782 6.21913 6.32552 6.84799 6.97213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.196 4.196 3 C 0.039 3.961 4 C -0.030 4.030 5 O -0.551 6.551 6 Si 0.791 3.209 7 N -0.503 5.503 8 C 0.165 3.835 9 N -0.401 5.401 10 C 0.010 3.990 11 C -0.104 4.104 12 C 0.050 3.950 13 C -0.096 4.096 14 C -0.018 4.018 15 C 0.208 3.792 16 N -0.520 5.520 17 C -0.053 4.053 18 C -0.047 4.047 19 N -0.565 5.565 20 C -0.118 4.118 21 S 0.179 5.821 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.408 0.592 27 H -0.295 1.295 28 H -0.310 1.310 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.186 0.814 37 H 0.210 0.790 38 H 0.419 0.581 39 H 0.076 0.924 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 4.046 2.653 6.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.318 4.318 3 C -0.092 4.092 4 C -0.143 4.143 5 O -0.362 6.362 6 Si 0.697 3.303 7 N -0.223 5.223 8 C -0.202 4.202 9 N -0.123 5.123 10 C -0.119 4.119 11 C -0.142 4.142 12 C -0.041 4.041 13 C -0.135 4.135 14 C -0.038 4.038 15 C -0.056 4.056 16 N -0.240 5.240 17 C -0.200 4.200 18 C -0.180 4.180 19 N -0.168 5.168 20 C -0.158 4.158 21 S 0.435 5.565 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.261 0.739 27 H -0.223 1.223 28 H -0.238 1.238 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.150 0.850 36 H 0.203 0.797 37 H 0.226 0.774 38 H 0.258 0.742 39 H 0.095 0.905 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.606 1.840 2.207 3.879 hybrid contribution -1.495 1.229 0.422 1.981 sum -4.101 3.069 2.628 5.757 Atomic orbital electron populations 1.20295 0.84400 1.02605 1.04856 1.26083 1.03228 0.93465 1.08995 1.19610 0.87057 0.96931 1.05591 1.23916 0.93599 0.94182 1.02600 1.86359 1.33020 1.38038 1.78739 0.95116 0.76762 0.83599 0.74790 1.66415 1.18023 1.19444 1.18466 1.25307 0.99551 0.90216 1.05129 1.66854 0.95087 1.40716 1.09652 1.23862 0.92087 0.95824 1.00132 1.23045 0.94298 1.04181 0.92701 1.23672 0.95480 0.96362 0.88586 1.22859 1.03979 0.95503 0.91196 1.20884 0.98687 0.98501 0.85748 1.23143 0.82485 1.03555 0.96457 1.70195 1.32958 1.20390 1.00465 1.22809 0.88865 1.07344 1.00998 1.23334 1.02702 1.07924 0.84084 1.43351 1.09674 1.51770 1.12028 1.23137 0.99139 0.98981 0.94517 1.84082 0.95815 1.09492 1.67121 0.91357 0.89454 0.88441 0.88464 0.73907 1.22326 1.23835 0.90200 0.87899 0.86039 0.88064 0.90777 0.87907 0.84986 0.79672 0.77372 0.74189 0.90503 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.09 8.91 71.24 0.63 0.73 16 2 C -0.20 -0.61 6.50 24.58 0.16 -0.45 16 3 C 0.04 0.18 5.95 41.41 0.25 0.42 16 4 C -0.03 0.05 2.93 71.24 0.21 0.26 16 5 O -0.55 2.94 9.80 -148.98 -1.46 1.48 16 6 Si 0.79 -0.39 32.09 68.60 2.20 1.81 16 7 N -0.50 -3.38 6.15 -189.85 -1.17 -4.55 16 8 C 0.16 0.99 5.33 179.32 0.96 1.94 16 9 N -0.40 -1.74 6.53 -701.22 -4.58 -6.32 16 10 C 0.01 0.02 7.63 82.70 0.63 0.65 16 11 C -0.10 0.21 8.21 30.74 0.25 0.47 16 12 C 0.05 0.09 1.16 -0.05 0.00 0.09 16 13 C -0.10 -0.21 7.50 30.93 0.23 0.02 16 14 C -0.02 -0.06 4.29 -10.92 -0.05 -0.11 16 15 C 0.21 1.67 7.36 138.13 1.02 2.69 16 16 N -0.52 -6.33 11.25 -188.13 -2.12 -8.45 16 17 C -0.05 -0.40 11.87 83.52 0.99 0.59 16 18 C -0.05 -0.16 12.04 83.09 1.00 0.84 16 19 N -0.56 -2.74 5.94 -186.27 -1.11 -3.84 16 20 C -0.12 -0.44 5.93 31.02 0.18 -0.25 16 21 S 0.18 0.70 23.21 -56.49 -1.31 -0.61 16 22 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 23 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.10 -0.16 6.73 -2.39 -0.02 -0.18 16 25 H 0.10 -0.46 7.96 -2.39 -0.02 -0.47 16 26 H 0.41 -6.26 8.74 -74.06 -0.65 -6.91 16 27 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 28 H -0.31 -2.32 7.11 99.48 0.71 -1.61 16 29 H 0.08 0.39 6.94 -2.39 -0.02 0.38 16 30 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.12 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.07 0.36 8.09 -2.39 -0.02 0.34 16 34 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.21 -0.88 8.06 -2.91 -0.02 -0.90 16 38 H 0.42 1.00 7.53 -92.71 -0.70 0.30 16 39 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.07 0.40 5.29 -2.39 -0.01 0.39 16 Total: 0.00 -19.82 337.33 -3.29 -23.11 By element: Atomic # 1 Polarization: -10.31 SS G_CDS: -0.22 Total: -10.53 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.47 Total: 7.89 kcal Atomic # 7 Polarization: -14.18 SS G_CDS: -8.97 Total: -23.16 kcal Atomic # 8 Polarization: 2.94 SS G_CDS: -1.46 Total: 1.48 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: 2.20 Total: 1.81 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -1.31 Total: -0.61 kcal Total: -19.82 -3.29 -23.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15704104_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.222 kcal (2) G-P(sol) polarization free energy of solvation -19.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds