Wall clock time and date at job start Mon Mar 8 2021 07:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.46772 * 2 1 4 4 C 1.50694 * 109.47305 * 239.99829 * 2 1 3 5 5 C 1.37991 * 120.32416 * 119.99863 * 4 2 1 6 6 N 1.32014 * 120.89619 * 179.97438 * 5 4 2 7 7 C 1.32337 * 121.64841 * 359.97438 * 6 5 4 8 8 N 1.39146 * 119.71527 * 179.97438 * 7 6 5 9 9 C 1.47631 * 110.99984 * 29.51030 * 8 7 6 10 10 C 1.53656 * 88.14800 * 222.09632 * 9 8 7 11 11 C 1.46691 * 110.99739 * 293.82519 * 8 7 6 12 12 C 1.53064 * 120.99484 * 264.02155 * 11 8 7 13 13 C 1.53921 * 86.84180 * 150.36137 * 12 11 8 14 14 C 1.50703 * 113.58760 * 220.46614 * 13 12 11 15 15 N 1.30498 * 125.65038 * 263.58194 * 14 13 12 16 16 C 1.34127 * 109.25287 * 180.02562 * 15 14 13 17 17 C 1.34665 * 108.02221 * 0.02562 * 16 15 14 18 18 N 1.35040 * 125.64906 * 83.27349 * 14 13 12 19 19 C 1.53317 * 121.00147 * 12.08689 * 11 8 7 20 20 C 1.39340 * 120.56328 * 0.25931 * 7 6 5 21 21 F 1.35104 * 120.46929 * 179.72213 * 20 7 6 22 22 C 1.38444 * 119.05832 * 359.49280 * 20 7 6 23 23 H 0.96696 * 114.00236 * 60.00899 * 1 2 3 24 24 H 1.08998 * 109.47099 * 119.99237 * 2 1 3 25 25 H 1.48503 * 110.00221 * 59.99632 * 3 2 1 26 26 H 1.48495 * 109.99869 * 181.31670 * 3 2 1 27 27 H 1.07999 * 119.55090 * 359.95673 * 5 4 2 28 28 H 1.09004 * 113.44255 * 336.91432 * 9 8 7 29 29 H 1.08993 * 113.44172 * 107.22258 * 9 8 7 30 30 H 1.08991 * 114.20965 * 271.76894 * 10 9 8 31 31 H 1.08994 * 114.20774 * 138.92334 * 10 9 8 32 32 H 1.08997 * 113.65643 * 35.87547 * 12 11 8 33 33 H 1.09002 * 113.73656 * 264.86011 * 12 11 8 34 34 H 1.09003 * 113.58552 * 89.72716 * 13 12 11 35 35 H 1.08004 * 125.98740 * 179.97438 * 16 15 14 36 36 H 1.08005 * 126.59150 * 180.02562 * 17 16 15 37 37 H 0.97006 * 126.39583 * 0.02562 * 18 14 13 38 38 H 1.09003 * 113.72734 * 95.18813 * 19 11 8 39 39 H 1.09001 * 113.65449 * 324.08764 * 19 11 8 40 40 H 1.08000 * 120.76006 * 180.24893 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7251 -0.0462 -2.1431 6 7 3.1718 -0.6577 -3.2244 7 6 2.8801 -1.9236 -3.4768 8 7 3.3722 -2.5283 -4.6294 9 6 4.6604 -1.9300 -5.0320 10 6 4.1661 -1.9671 -6.4864 11 6 2.7867 -1.9239 -5.8310 12 6 1.5702 -2.5514 -6.5161 13 6 1.1921 -1.1270 -6.9600 14 6 -0.2846 -0.8396 -6.8710 15 7 -1.1370 -0.9263 -7.8553 16 6 -2.3595 -0.5977 -7.4120 17 6 -2.2607 -0.2952 -6.1035 18 7 -0.9459 -0.4553 -5.7581 19 6 1.9934 -0.6145 -5.7498 20 6 2.0796 -2.6544 -2.6012 21 9 1.7784 -3.9451 -2.8635 22 6 1.6013 -2.0406 -1.4562 23 1 -0.3933 0.4416 -0.7651 24 1 1.7924 -0.5137 0.8900 25 1 1.5613 2.4680 1.2085 26 1 3.5345 1.7704 -0.0321 27 1 2.9842 0.9879 -1.9706 28 1 4.8076 -0.9198 -4.6498 29 1 5.5164 -2.5789 -4.8474 30 1 4.3837 -2.8986 -7.0088 31 1 4.4138 -1.0775 -7.0655 32 1 0.8581 -2.9964 -5.8212 33 1 1.8257 -3.2139 -7.3431 34 1 1.6216 -0.8409 -7.9202 35 1 -3.2643 -0.5781 -8.0014 36 1 -3.0654 0.0091 -5.4505 37 1 -0.5605 -0.3150 -4.8791 38 1 2.5888 0.2731 -5.9638 39 1 1.3993 -0.5186 -4.8410 40 1 0.9819 -2.5824 -0.7566 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15704104_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:33:34 Heat of formation + Delta-G solvation = 113.612686 kcal Electronic energy + Delta-G solvation = -27379.421197 eV Core-core repulsion = 23500.427444 eV Total energy + Delta-G solvation = -3878.993753 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.08435 -43.37232 -42.66099 -40.87342 -38.05602 -37.12273 -33.80984 -33.45945 -32.82496 -30.49065 -29.74950 -27.09901 -26.26485 -25.95997 -25.08694 -23.25730 -23.05890 -22.19748 -21.30278 -19.75894 -19.20068 -19.11189 -18.41872 -17.96555 -17.62253 -17.27594 -16.58462 -16.36186 -16.26710 -16.13483 -16.00604 -15.54475 -15.32253 -14.78447 -14.65858 -14.53790 -14.30947 -14.24561 -13.89699 -13.62274 -13.42252 -13.06959 -12.81667 -12.74863 -12.49493 -12.20185 -12.18633 -11.82351 -11.35710 -11.06078 -11.03957 -11.03582 -10.97012 -10.58515 -10.29517 -9.79508 -9.34470 -5.05352 -0.49311 -0.21326 1.08227 1.19493 1.60163 1.95488 2.10203 2.14845 2.18641 2.37022 2.90079 3.02331 3.23749 3.28861 3.33670 3.38310 3.47463 3.62110 3.64410 3.67502 3.80716 4.05846 4.14366 4.21672 4.29915 4.35434 4.43621 4.48429 4.53726 4.57504 4.60372 4.69262 4.74803 4.76151 4.81650 4.88076 4.95160 4.97762 5.11273 5.15866 5.24898 5.29357 5.79070 5.99811 6.43630 6.45565 6.68454 7.12932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.067 4.067 3 Si 0.779 3.221 4 C -0.139 4.139 5 C 0.108 3.892 6 N -0.473 5.473 7 C 0.237 3.763 8 N -0.440 5.440 9 C 0.006 3.994 10 C -0.108 4.108 11 C 0.050 3.950 12 C -0.107 4.107 13 C -0.018 4.018 14 C 0.210 3.790 15 N -0.529 5.529 16 C -0.062 4.062 17 C -0.041 4.041 18 N -0.558 5.558 19 C -0.108 4.108 20 C 0.054 3.946 21 F -0.133 7.133 22 C -0.078 4.078 23 H 0.397 0.603 24 H 0.117 0.883 25 H -0.297 1.297 26 H -0.278 1.278 27 H 0.190 0.810 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.179 0.821 36 H 0.212 0.788 37 H 0.426 0.574 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 5.520 1.789 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.177 4.177 3 Si 0.683 3.317 4 C -0.141 4.141 5 C -0.051 4.051 6 N -0.184 5.184 7 C 0.007 3.993 8 N -0.161 5.161 9 C -0.121 4.121 10 C -0.146 4.146 11 C -0.038 4.038 12 C -0.146 4.146 13 C -0.039 4.039 14 C -0.054 4.054 15 N -0.250 5.250 16 C -0.209 4.209 17 C -0.176 4.176 18 N -0.162 5.162 19 C -0.147 4.147 20 C 0.031 3.969 21 F -0.111 7.111 22 C -0.105 4.105 23 H 0.247 0.753 24 H 0.134 0.866 25 H -0.224 1.224 26 H -0.205 1.205 27 H 0.206 0.794 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.147 0.853 35 H 0.196 0.804 36 H 0.228 0.772 37 H 0.266 0.734 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.911 5.226 1.460 5.752 hybrid contribution -0.798 -0.737 2.127 2.389 sum 1.113 4.489 3.587 5.852 Atomic orbital electron populations 1.86530 1.16598 1.82060 1.50566 1.25154 0.85685 1.10879 0.95964 0.93852 0.78156 0.74014 0.85633 1.21362 0.99560 0.94040 0.99165 1.22946 0.93051 1.00726 0.88350 1.67856 1.21955 1.07954 1.20650 1.20583 0.95190 0.88759 0.94730 1.67031 1.06634 1.43889 0.98548 1.23889 0.91526 1.01095 0.95576 1.22990 0.90746 1.05023 0.95803 1.23612 0.95361 0.94905 0.89964 1.22894 0.95868 0.95890 0.99952 1.20885 0.84475 0.97296 1.01211 1.23153 0.96374 1.03242 0.82636 1.70181 1.01814 1.21771 1.31185 1.22758 0.96394 1.07176 0.94592 1.23295 0.86932 1.08866 0.98457 1.43234 1.08488 1.52141 1.12319 1.23151 0.97301 0.97654 0.96622 1.18585 1.01346 0.80226 0.96742 1.91523 1.91409 1.34305 1.93897 1.21663 0.98366 0.95239 0.95232 0.75251 0.86554 1.22437 1.20459 0.79387 0.87962 0.89442 0.87824 0.87431 0.91569 0.89386 0.85336 0.80430 0.77168 0.73392 0.87911 0.90405 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.48 12.78 -148.98 -1.90 1.57 16 2 C -0.07 0.46 2.84 71.23 0.20 0.66 16 3 Si 0.78 -6.45 29.82 68.60 2.05 -4.40 16 4 C -0.14 0.76 5.40 -19.77 -0.11 0.65 16 5 C 0.11 -0.63 9.84 84.61 0.83 0.21 16 6 N -0.47 0.87 6.83 -193.03 -1.32 -0.44 16 7 C 0.24 0.42 4.86 133.08 0.65 1.07 16 8 N -0.44 -1.03 6.28 -694.18 -4.36 -5.39 16 9 C 0.01 -0.01 7.58 82.70 0.63 0.62 16 10 C -0.11 0.45 8.21 30.74 0.25 0.71 16 11 C 0.05 -0.07 1.14 -0.06 0.00 -0.07 16 12 C -0.11 -0.11 7.51 30.93 0.23 0.12 16 13 C -0.02 0.01 4.28 -10.92 -0.05 -0.04 16 14 C 0.21 0.85 7.35 138.13 1.02 1.86 16 15 N -0.53 -5.22 11.25 -188.13 -2.12 -7.34 16 16 C -0.06 -0.33 11.87 83.52 0.99 0.66 16 17 C -0.04 0.03 12.04 83.09 1.00 1.03 16 18 N -0.56 0.64 5.94 -186.27 -1.11 -0.47 16 19 C -0.11 0.41 5.76 31.01 0.18 0.59 16 20 C 0.05 0.16 7.35 22.58 0.17 0.33 16 21 F -0.13 -1.05 17.10 44.97 0.77 -0.28 16 22 C -0.08 0.13 9.75 22.48 0.22 0.34 16 23 H 0.40 -5.94 8.70 -74.06 -0.64 -6.59 16 24 H 0.12 -0.66 7.96 -2.39 -0.02 -0.68 16 25 H -0.30 -0.06 7.11 99.48 0.71 0.65 16 26 H -0.28 1.03 7.11 99.48 0.71 1.73 16 27 H 0.19 -2.09 4.88 -2.91 -0.01 -2.10 16 28 H 0.10 -0.18 6.65 -2.39 -0.02 -0.20 16 29 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.07 0.32 8.09 -2.39 -0.02 0.30 16 33 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 36 H 0.21 -1.81 8.06 -2.91 -0.02 -1.83 16 37 H 0.43 -2.82 7.54 -92.70 -0.70 -3.52 16 38 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.08 -0.32 5.28 -2.39 -0.01 -0.33 16 40 H 0.16 -0.44 8.06 -2.91 -0.02 -0.47 16 Total: 0.00 -20.93 332.11 -1.98 -22.91 By element: Atomic # 1 Polarization: -14.70 SS G_CDS: -0.20 Total: -14.90 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 6.21 Total: 8.75 kcal Atomic # 7 Polarization: -4.74 SS G_CDS: -8.90 Total: -13.64 kcal Atomic # 8 Polarization: 3.48 SS G_CDS: -1.90 Total: 1.57 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.77 Total: -0.28 kcal Atomic # 14 Polarization: -6.45 SS G_CDS: 2.05 Total: -4.40 kcal Total: -20.93 -1.98 -22.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15704104_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.520 kcal (2) G-P(sol) polarization free energy of solvation -20.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds