Wall clock time and date at job start Mon Mar 8 2021 07:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33319 * 125.95539 * 2 1 4 4 C 1.50709 * 122.70658 * 0.27613 * 3 2 1 5 5 O 1.42903 * 109.47245 * 44.78124 * 4 3 2 6 6 Si 1.86296 * 109.47071 * 164.78089 * 4 3 2 7 7 H 1.48500 * 109.47136 * 59.99958 * 6 4 3 8 8 H 1.48498 * 109.47329 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47159 * 299.99939 * 6 4 3 10 10 N 1.32114 * 114.58509 * 180.02562 * 3 2 1 11 11 C 1.29691 * 116.86561 * 0.02562 * 10 3 2 12 12 N 1.38603 * 124.95030 * 180.02562 * 11 10 3 13 13 C 1.46535 * 111.00176 * 51.53407 * 12 11 10 14 14 C 1.54606 * 108.97294 * 206.38368 * 13 12 11 15 15 Si 1.85304 * 106.57527 * 304.47994 * 14 13 12 16 16 C 1.87670 * 111.47804 * 165.09099 * 15 14 13 17 17 C 1.56421 * 98.95126 * 98.42678 * 16 15 14 18 18 C 1.53809 * 109.79717 * 39.30055 * 17 16 15 19 19 C 1.55744 * 111.40454 * 312.25002 * 18 17 16 20 20 C 1.85301 * 109.61593 * 41.17567 * 15 14 13 21 21 C 1.46525 * 110.99963 * 179.97438 * 12 11 10 22 22 S 1.70969 * 110.09771 * 359.97438 * 11 10 3 23 23 H 1.09001 * 109.47320 * 84.23763 * 1 2 3 24 24 H 1.09003 * 109.47087 * 204.24403 * 1 2 3 25 25 H 1.08995 * 109.46938 * 324.23542 * 1 2 3 26 26 H 1.09005 * 109.46979 * 284.78005 * 4 3 2 27 27 H 0.96700 * 113.99911 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.55030 * 326.22954 * 13 12 11 29 29 H 1.08992 * 109.55396 * 86.53594 * 13 12 11 30 30 H 1.09006 * 110.02795 * 185.21524 * 14 13 12 31 31 H 1.08997 * 110.03468 * 63.75169 * 14 13 12 32 32 H 1.09001 * 111.49435 * 215.86303 * 16 15 14 33 33 H 1.08996 * 111.50105 * 340.99285 * 16 15 14 34 34 H 1.09000 * 109.41451 * 279.20346 * 17 16 15 35 35 H 1.09002 * 109.41997 * 159.39578 * 17 16 15 36 36 H 1.09003 * 109.10334 * 191.74137 * 18 17 16 37 37 H 1.09004 * 109.10348 * 72.76808 * 18 17 16 38 38 H 1.08997 * 111.15253 * 270.07735 * 19 18 17 39 39 H 1.08992 * 111.15121 * 145.84254 * 19 18 17 40 40 H 1.08994 * 110.02622 * 199.55984 * 20 15 14 41 41 H 1.08997 * 110.11208 * 78.13847 * 20 15 14 42 42 H 1.08997 * 109.55208 * 273.46731 * 21 12 11 43 43 H 1.08998 * 109.55230 * 33.66751 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7414 2.4830 0.0061 5 8 0.6810 2.5760 0.9596 6 14 3.0959 3.6768 0.4653 7 1 4.1978 3.5801 -0.5255 8 1 2.5558 5.0600 0.4707 9 1 3.6140 3.3418 1.8161 10 7 3.5850 0.8187 -0.0005 11 6 3.9315 -0.4310 -0.0015 12 7 5.2384 -0.8927 -0.0017 13 6 6.0168 -0.2661 1.0701 14 6 7.5091 -0.2535 0.6660 15 14 7.9704 -2.0088 0.2922 16 6 9.5991 -2.1087 -0.6348 17 6 10.5445 -2.4330 0.5684 18 6 9.8491 -3.4138 1.5277 19 6 8.3951 -2.9583 1.8506 20 6 6.6008 -2.8242 -0.6527 21 6 5.2779 -2.3574 -0.0023 22 16 2.5412 -1.4261 -0.0011 23 1 -0.3634 0.1032 -1.0225 24 1 -0.3633 -0.9371 0.4220 25 1 -0.3633 0.8338 0.6006 26 1 1.3611 2.7288 -0.9854 27 1 0.2798 3.4539 1.0171 28 1 5.6713 0.7565 1.2219 29 1 5.8932 -0.8352 1.9914 30 1 8.1155 0.1247 1.4891 31 1 7.6511 0.3665 -0.2191 32 1 9.5931 -2.9161 -1.3670 33 1 9.8545 -1.1555 -1.0977 34 1 10.7820 -1.5122 1.1010 35 1 11.4649 -2.8824 0.1953 36 1 10.4192 -3.4706 2.4549 37 1 9.8197 -4.4018 1.0682 38 1 8.3716 -2.3089 2.7256 39 1 7.7345 -3.8153 1.9812 40 1 6.6906 -3.9080 -0.5797 41 1 6.6320 -2.5170 -1.6980 42 1 5.2256 -2.7241 1.0228 43 1 4.4332 -2.7449 -0.5718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15733052_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:13:52 Heat of formation + Delta-G solvation = -21.980053 kcal Electronic energy + Delta-G solvation = -22180.905598 eV Core-core repulsion = 19089.961847 eV Total energy + Delta-G solvation = -3090.943752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24254 -39.30811 -37.42109 -36.24146 -33.32184 -32.46181 -30.83986 -29.80977 -28.89085 -25.69232 -25.09686 -24.53946 -24.01854 -22.10244 -21.06931 -19.88774 -19.30030 -18.39746 -17.51531 -16.63679 -16.12385 -16.07667 -15.96036 -15.71423 -15.60136 -15.18582 -14.67668 -14.36380 -14.28853 -14.01290 -13.95751 -13.67239 -13.63036 -13.39173 -13.16393 -12.93766 -12.78900 -12.66475 -12.45403 -12.24068 -12.20838 -12.03820 -11.95715 -11.64457 -11.44285 -11.02004 -10.56084 -10.47218 -10.39806 -10.33245 -10.26106 -9.99488 -8.85272 -0.14200 0.25692 0.74444 1.28268 1.61229 1.62683 1.68867 1.69382 1.78374 1.81876 2.16854 2.24669 2.53012 3.11552 3.71714 3.90143 3.96713 4.03979 4.04773 4.07389 4.12497 4.21747 4.32858 4.33783 4.38321 4.42538 4.54092 4.55437 4.59649 4.72257 4.76713 4.78428 4.95344 5.01310 5.03901 5.11364 5.13052 5.20735 5.27533 5.31247 5.34660 5.43187 5.44569 5.56799 5.74744 6.54883 6.85011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.202 4.202 3 C 0.083 3.917 4 C -0.048 4.048 5 O -0.544 6.544 6 Si 0.981 3.019 7 H -0.247 1.247 8 H -0.267 1.267 9 H -0.255 1.255 10 N -0.501 5.501 11 C 0.243 3.757 12 N -0.458 5.458 13 C 0.074 3.926 14 C -0.406 4.406 15 Si 0.996 3.004 16 C -0.402 4.402 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.408 4.408 20 C -0.403 4.403 21 C 0.060 3.940 22 S 0.094 5.906 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.384 0.616 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -1.090 0.157 1.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.323 4.323 3 C -0.048 4.048 4 C -0.160 4.160 5 O -0.351 6.351 6 Si 0.802 3.198 7 H -0.170 1.170 8 H -0.192 1.192 9 H -0.178 1.178 10 N -0.223 5.223 11 C -0.127 4.127 12 N -0.178 5.178 13 C -0.052 4.052 14 C -0.493 4.493 15 Si 1.190 2.810 16 C -0.489 4.489 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.495 4.495 20 C -0.490 4.490 21 C -0.067 4.067 22 S 0.346 5.654 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.232 0.768 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.773 -1.715 0.069 1.882 hybrid contribution -0.933 0.734 0.241 1.211 sum -0.160 -0.981 0.310 1.041 Atomic orbital electron populations 1.20381 0.86439 1.03964 1.03057 1.25400 1.01654 0.93313 1.11981 1.18936 0.86571 0.95322 1.03922 1.24055 0.98506 0.97939 0.95508 1.86376 1.51223 1.36813 1.60664 0.85126 0.77607 0.74916 0.82109 1.16997 1.19229 1.17832 1.65803 1.16872 1.17635 1.21966 1.24806 0.93910 0.91695 1.02246 1.57021 1.05231 1.09221 1.46365 1.22136 0.93044 1.00678 0.89348 1.26305 0.97375 1.19567 1.06062 0.79681 0.66670 0.66824 0.67856 1.26594 1.15700 1.04292 1.02294 1.22041 0.99144 0.99459 0.95347 1.21849 0.95102 0.99319 0.99265 1.26549 1.00208 1.08531 1.14188 1.26256 1.07276 1.06942 1.08485 1.22218 1.00358 0.82665 1.01455 1.84129 0.98145 1.11472 1.71658 0.91120 0.91776 0.87835 0.89973 0.76756 0.88642 0.92616 0.89292 0.89139 0.90212 0.90158 0.91787 0.91593 0.91888 0.91956 0.90424 0.90343 0.89016 0.89007 0.91718 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.06 9.98 36.01 0.36 0.30 16 2 C -0.20 -0.57 6.49 -36.03 -0.23 -0.80 16 3 C 0.08 0.30 6.03 -84.18 -0.51 -0.20 16 4 C -0.05 -0.06 2.72 36.01 0.10 0.04 16 5 O -0.54 0.00 10.23 -35.23 -0.36 -0.36 16 6 Si 0.98 1.86 27.15 -169.99 -4.62 -2.76 16 7 H -0.25 -0.92 7.11 56.52 0.40 -0.52 16 8 H -0.27 -0.29 7.11 56.52 0.40 0.12 16 9 H -0.25 -1.00 7.11 56.52 0.40 -0.60 16 10 N -0.50 -2.35 7.80 -11.36 -0.09 -2.44 16 11 C 0.24 0.80 6.85 -87.68 -0.60 0.20 16 12 N -0.46 -0.73 4.10 -173.96 -0.71 -1.45 16 13 C 0.07 0.06 5.38 -3.18 -0.02 0.04 16 14 C -0.41 0.32 5.22 38.00 0.20 0.52 16 15 Si 1.00 -2.17 10.72 -169.99 -1.82 -4.00 16 16 C -0.40 0.46 5.94 39.00 0.23 0.70 16 17 C -0.12 0.09 5.97 -24.47 -0.15 -0.06 16 18 C -0.12 0.09 6.10 -24.85 -0.15 -0.06 16 19 C -0.41 0.63 5.84 38.62 0.23 0.85 16 20 C -0.40 0.69 5.22 38.01 0.20 0.89 16 21 C 0.06 -0.03 4.88 -3.17 -0.02 -0.05 16 22 S 0.09 0.18 20.74 -107.50 -2.23 -2.05 16 23 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 24 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 25 H 0.10 0.08 5.70 -51.93 -0.30 -0.22 16 26 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 27 H 0.38 -1.74 8.74 45.56 0.40 -1.34 16 28 H 0.10 0.24 7.23 -51.93 -0.38 -0.14 16 29 H 0.06 -0.03 7.65 -51.93 -0.40 -0.43 16 30 H 0.09 -0.15 7.98 -51.93 -0.41 -0.56 16 31 H 0.09 0.00 7.97 -51.93 -0.41 -0.42 16 32 H 0.08 -0.10 8.04 -51.93 -0.42 -0.51 16 33 H 0.08 -0.08 8.04 -51.93 -0.42 -0.50 16 34 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 35 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 36 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 37 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.08 -0.11 8.03 -51.93 -0.42 -0.53 16 39 H 0.08 -0.14 8.03 -51.93 -0.42 -0.56 16 40 H 0.09 -0.26 7.97 -51.93 -0.41 -0.67 16 41 H 0.09 -0.11 7.98 -51.93 -0.41 -0.52 16 42 H 0.06 -0.12 7.65 -51.93 -0.40 -0.51 16 43 H 0.09 -0.04 6.26 -51.42 -0.32 -0.36 16 LS Contribution 342.80 15.07 5.17 5.17 Total: 0.00 -5.51 342.80 -11.49 -17.00 By element: Atomic # 1 Polarization: -5.03 SS G_CDS: -6.46 Total: -11.49 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.36 Total: 2.38 kcal Atomic # 7 Polarization: -3.08 SS G_CDS: -0.80 Total: -3.88 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -0.36 Total: -0.36 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -6.44 Total: -6.75 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.23 Total: -2.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -5.51 -11.49 -17.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15733052_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.981 kcal (2) G-P(sol) polarization free energy of solvation -5.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds