Wall clock time and date at job start Mon Mar 8 2021 09:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.46985 * 2 1 4 4 C 1.50702 * 109.47219 * 239.99403 * 2 1 3 5 5 C 1.33322 * 125.95545 * 299.97783 * 4 2 1 6 6 N 1.32119 * 114.58235 * 179.75224 * 5 4 2 7 7 C 1.29687 * 116.85957 * 0.47527 * 6 5 4 8 8 N 1.38610 * 124.94521 * 179.81586 * 7 6 5 9 9 C 1.46501 * 119.99908 * 359.68895 * 8 7 6 10 10 H 1.08993 * 112.90929 * 336.25398 * 9 8 7 11 11 C 1.53962 * 113.66387 * 107.55609 * 9 8 7 12 12 C 1.53782 * 87.11063 * 139.88885 * 11 9 8 13 13 H 1.08996 * 113.68722 * 89.19879 * 12 11 9 14 14 C 1.53003 * 113.61259 * 220.08801 * 12 11 9 15 15 F 1.39900 * 109.46912 * 277.50004 * 14 12 11 16 16 C 1.53781 * 87.08260 * 334.63747 * 12 11 9 17 17 S 1.70966 * 110.10438 * 359.54457 * 7 6 5 18 18 H 0.96705 * 113.99807 * 60.00598 * 1 2 3 19 19 H 1.08996 * 109.46453 * 119.99632 * 2 1 3 20 20 H 1.48492 * 110.00139 * 59.99391 * 3 2 1 21 21 H 1.48497 * 109.99641 * 181.31581 * 3 2 1 22 22 H 1.08005 * 122.70871 * 0.02562 * 5 4 2 23 23 H 0.97002 * 120.00295 * 179.69620 * 8 7 6 24 24 H 1.08997 * 113.53543 * 25.33559 * 11 9 8 25 25 H 1.08994 * 113.66446 * 254.45762 * 11 9 8 26 26 H 1.08997 * 109.46667 * 37.49898 * 14 12 11 27 27 H 1.08999 * 109.46658 * 157.49792 * 14 12 11 28 28 H 1.09002 * 113.61445 * 139.98212 * 16 12 11 29 29 H 1.09002 * 113.61408 * 270.79943 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6839 -1.9791 -1.5577 6 7 2.2342 -2.3711 -2.6930 7 6 2.9426 -1.4943 -3.3343 8 7 3.5954 -1.7256 -4.5350 9 6 3.5180 -3.0442 -5.1687 10 1 3.2981 -3.8430 -4.4606 11 6 2.6313 -3.0740 -6.4270 12 6 3.6903 -3.9943 -7.0566 13 1 3.5185 -5.0537 -6.8665 14 6 3.9660 -3.6924 -8.5310 15 9 2.9959 -4.3148 -9.3238 16 6 4.7054 -3.3526 -6.0961 17 16 2.9479 -0.0095 -2.4868 18 1 -0.3933 0.4416 -0.7651 19 1 1.7922 -0.5138 0.8900 20 1 1.5614 2.4679 1.2083 21 1 3.5345 1.7702 -0.0320 22 1 1.0787 -2.6321 -0.9464 23 1 4.1036 -1.0144 -4.9556 24 1 2.5443 -2.1064 -6.9212 25 1 1.6678 -3.5593 -6.2718 26 1 3.9319 -2.6151 -8.6937 27 1 4.9525 -4.0695 -8.8007 28 1 5.4162 -4.0629 -5.6737 29 1 5.1865 -2.4620 -6.5004 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15744754_15704118.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:35 Heat of formation + Delta-G solvation = -8.427266 kcal Electronic energy + Delta-G solvation = -15198.167760 eV Core-core repulsion = 12357.865826 eV Total energy + Delta-G solvation = -2840.301934 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 245.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.53639 -40.98853 -40.03785 -37.85959 -35.49208 -31.35060 -29.50913 -26.95646 -26.56498 -24.94919 -23.38345 -21.20170 -20.69364 -19.54230 -18.24058 -17.26770 -17.11891 -16.83233 -16.75018 -16.40711 -15.83725 -15.79951 -15.38190 -15.19153 -14.81283 -14.00353 -13.78458 -13.67742 -13.02476 -12.88146 -12.54791 -12.34231 -12.25782 -12.00697 -11.73850 -11.35462 -11.10139 -10.77637 -10.25049 -10.15726 -8.76031 -5.13891 -0.03804 0.02389 0.68398 1.25730 1.57948 1.90258 2.02900 2.09958 3.18793 3.26299 3.40145 3.45375 3.61710 3.72100 3.93508 3.94968 4.03762 4.08991 4.44854 4.47197 4.48138 4.56048 4.69261 4.74787 4.83832 4.92641 5.04304 5.26168 5.81884 6.01784 6.52325 6.99780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.656 3.344 4 C -0.307 4.307 5 C 0.119 3.881 6 N -0.551 5.551 7 C 0.326 3.674 8 N -0.683 5.683 9 C 0.141 3.859 10 H 0.120 0.880 11 C -0.146 4.146 12 C -0.144 4.144 13 H 0.107 0.893 14 C 0.073 3.927 15 F -0.216 7.216 16 C -0.139 4.139 17 S 0.086 5.914 18 H 0.380 0.620 19 H 0.121 0.879 20 H -0.236 1.236 21 H -0.241 1.241 22 H 0.176 0.824 23 H 0.414 0.586 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 2.586 -2.336 4.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.125 4.125 3 Si 0.556 3.444 4 C -0.430 4.430 5 C -0.031 4.031 6 N -0.276 5.276 7 C -0.045 4.045 8 N -0.321 5.321 9 C 0.033 3.967 10 H 0.138 0.862 11 C -0.186 4.186 12 C -0.163 4.163 13 H 0.125 0.875 14 C 0.018 3.982 15 F -0.197 7.197 16 C -0.178 4.178 17 S 0.335 5.665 18 H 0.227 0.773 19 H 0.139 0.861 20 H -0.159 1.159 21 H -0.165 1.165 22 H 0.193 0.807 23 H 0.252 0.748 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.265 3.158 -1.816 4.892 hybrid contribution -0.238 -0.961 0.355 1.052 sum 3.027 2.198 -1.460 4.016 Atomic orbital electron populations 1.86514 1.16899 1.81692 1.49128 1.24117 0.84829 1.08893 0.94628 0.94973 0.81963 0.78086 0.89394 1.25580 1.13329 0.99260 1.04786 1.21328 0.97088 0.93058 0.91668 1.66474 1.16928 1.33719 1.10437 1.23784 0.94930 0.93521 0.92228 1.44086 1.54399 1.14295 1.19299 1.22588 0.96159 0.85011 0.92902 0.86216 1.23620 0.98759 0.99952 0.96253 1.22993 0.98158 1.01353 0.93807 0.87477 1.21961 0.90234 0.97723 0.88233 1.92789 1.66166 1.84946 1.75827 1.23370 0.96808 1.01482 0.96112 1.83974 1.51661 1.13758 1.17067 0.77255 0.86144 1.15892 1.16537 0.80692 0.74824 0.89428 0.90324 0.90696 0.90509 0.89899 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.13 12.87 -35.23 -0.45 -0.58 15 2 C -0.01 0.00 2.99 36.01 0.11 0.11 15 3 Si 0.66 -0.47 31.05 -169.99 -5.28 -5.75 15 4 C -0.31 -0.22 5.74 -36.02 -0.21 -0.43 15 5 C 0.12 0.23 11.22 -19.14 -0.21 0.01 15 6 N -0.55 -1.56 9.84 -15.21 -0.15 -1.71 15 7 C 0.33 0.33 8.09 -87.68 -0.71 -0.38 15 8 N -0.68 0.91 5.51 -54.90 -0.30 0.61 15 9 C 0.14 -0.21 4.37 -67.02 -0.29 -0.50 15 10 H 0.12 0.02 7.67 -51.93 -0.40 -0.37 15 11 C -0.15 0.22 7.44 -25.82 -0.19 0.03 15 12 C -0.14 0.33 4.10 -89.80 -0.37 -0.04 15 13 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 15 14 C 0.07 -0.14 7.35 37.16 0.27 0.13 15 15 F -0.22 -0.43 17.36 2.25 0.04 -0.39 15 16 C -0.14 0.47 7.39 -25.92 -0.19 0.28 15 17 S 0.09 -0.02 20.57 -107.50 -2.21 -2.23 15 18 H 0.38 -1.27 8.70 45.56 0.40 -0.87 15 19 H 0.12 0.00 7.96 -51.93 -0.41 -0.41 15 20 H -0.24 -0.45 7.11 56.52 0.40 -0.05 15 21 H -0.24 -0.36 7.11 56.52 0.40 0.04 15 22 H 0.18 0.15 8.06 -52.48 -0.42 -0.27 15 23 H 0.41 -1.50 8.85 -40.82 -0.36 -1.86 15 24 H 0.09 -0.17 7.96 -51.93 -0.41 -0.58 15 25 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 15 26 H 0.07 -0.24 7.94 -51.93 -0.41 -0.66 15 27 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 15 28 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 15 29 H 0.09 -0.42 8.08 -51.93 -0.42 -0.84 15 LS Contribution 267.88 15.07 4.04 4.04 Total: 0.00 -5.66 267.88 -9.45 -15.11 By element: Atomic # 1 Polarization: -4.97 SS G_CDS: -3.33 Total: -8.31 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.79 Total: -0.78 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -0.45 Total: -1.11 kcal Atomic # 8 Polarization: -0.13 SS G_CDS: -0.45 Total: -0.58 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.04 Total: -0.39 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: -5.28 Total: -5.75 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.21 Total: -2.23 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -5.66 -9.45 -15.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15744754_15704118.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.681 kcal (2) G-P(sol) polarization free energy of solvation -5.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds