Wall clock time and date at job start Mon Mar 8 2021 09:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.46985 * 2 1 4 4 C 1.50702 * 109.47219 * 239.99403 * 2 1 3 5 5 C 1.33322 * 125.95545 * 299.97783 * 4 2 1 6 6 N 1.32119 * 114.58235 * 179.75224 * 5 4 2 7 7 C 1.29687 * 116.85957 * 0.47527 * 6 5 4 8 8 N 1.38610 * 124.94521 * 179.81586 * 7 6 5 9 9 C 1.46501 * 119.99908 * 359.68895 * 8 7 6 10 10 H 1.08993 * 112.90929 * 336.25398 * 9 8 7 11 11 C 1.53962 * 113.66387 * 107.55609 * 9 8 7 12 12 C 1.53782 * 87.11063 * 139.88885 * 11 9 8 13 13 H 1.08996 * 113.68722 * 89.19879 * 12 11 9 14 14 C 1.53003 * 113.61259 * 220.08801 * 12 11 9 15 15 F 1.39900 * 109.46912 * 277.50004 * 14 12 11 16 16 C 1.53781 * 87.08260 * 334.63747 * 12 11 9 17 17 S 1.70966 * 110.10438 * 359.54457 * 7 6 5 18 18 H 0.96705 * 113.99807 * 60.00598 * 1 2 3 19 19 H 1.08996 * 109.46453 * 119.99632 * 2 1 3 20 20 H 1.48492 * 110.00139 * 59.99391 * 3 2 1 21 21 H 1.48497 * 109.99641 * 181.31581 * 3 2 1 22 22 H 1.08005 * 122.70871 * 0.02562 * 5 4 2 23 23 H 0.97002 * 120.00295 * 179.69620 * 8 7 6 24 24 H 1.08997 * 113.53543 * 25.33559 * 11 9 8 25 25 H 1.08994 * 113.66446 * 254.45762 * 11 9 8 26 26 H 1.08997 * 109.46667 * 37.49898 * 14 12 11 27 27 H 1.08999 * 109.46658 * 157.49792 * 14 12 11 28 28 H 1.09002 * 113.61445 * 139.98212 * 16 12 11 29 29 H 1.09002 * 113.61408 * 270.79943 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6839 -1.9791 -1.5577 6 7 2.2342 -2.3711 -2.6930 7 6 2.9426 -1.4943 -3.3343 8 7 3.5954 -1.7256 -4.5350 9 6 3.5180 -3.0442 -5.1687 10 1 3.2981 -3.8430 -4.4606 11 6 2.6313 -3.0740 -6.4270 12 6 3.6903 -3.9943 -7.0566 13 1 3.5185 -5.0537 -6.8665 14 6 3.9660 -3.6924 -8.5310 15 9 2.9959 -4.3148 -9.3238 16 6 4.7054 -3.3526 -6.0961 17 16 2.9479 -0.0095 -2.4868 18 1 -0.3933 0.4416 -0.7651 19 1 1.7922 -0.5138 0.8900 20 1 1.5614 2.4679 1.2083 21 1 3.5345 1.7702 -0.0320 22 1 1.0787 -2.6321 -0.9464 23 1 4.1036 -1.0144 -4.9556 24 1 2.5443 -2.1064 -6.9212 25 1 1.6678 -3.5593 -6.2718 26 1 3.9319 -2.6151 -8.6937 27 1 4.9525 -4.0695 -8.8007 28 1 5.4162 -4.0629 -5.6737 29 1 5.1865 -2.4620 -6.5004 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15744754_15704118.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:34 Heat of formation + Delta-G solvation = -5.311610 kcal Electronic energy + Delta-G solvation = -15198.032655 eV Core-core repulsion = 12357.865826 eV Total energy + Delta-G solvation = -2840.166829 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 245.063 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.54065 -40.96786 -39.97518 -37.85561 -35.43486 -31.36875 -29.38923 -26.83290 -26.52409 -24.93742 -23.32162 -21.06926 -20.70389 -19.50209 -18.23918 -17.17926 -17.06369 -16.75560 -16.69581 -16.41774 -15.86322 -15.74016 -15.37982 -15.18480 -14.84202 -14.06318 -13.71906 -13.46256 -12.97119 -12.84747 -12.48487 -12.40058 -12.15476 -11.98811 -11.59038 -11.22319 -11.04560 -10.80090 -10.28713 -10.17633 -8.74323 -5.11228 -0.07637 0.01297 0.65003 1.26312 1.57489 1.87968 1.95677 2.19118 3.35691 3.43266 3.48929 3.57643 3.75861 3.78411 3.93076 4.11969 4.22489 4.27747 4.47586 4.59322 4.68908 4.70331 4.76386 4.81049 4.97103 5.04016 5.11179 5.36299 5.85343 6.16701 6.71659 7.00480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.015 4.015 3 Si 0.732 3.268 4 C -0.309 4.309 5 C 0.103 3.897 6 N -0.581 5.581 7 C 0.314 3.686 8 N -0.673 5.673 9 C 0.137 3.863 10 H 0.099 0.901 11 C -0.146 4.146 12 C -0.141 4.141 13 H 0.098 0.902 14 C 0.066 3.934 15 F -0.241 7.241 16 C -0.122 4.122 17 S 0.118 5.882 18 H 0.395 0.605 19 H 0.118 0.882 20 H -0.272 1.272 21 H -0.267 1.267 22 H 0.176 0.824 23 H 0.426 0.574 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 3.437 -2.988 5.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.128 4.128 3 Si 0.635 3.365 4 C -0.432 4.432 5 C -0.048 4.048 6 N -0.307 5.307 7 C -0.056 4.056 8 N -0.312 5.312 9 C 0.029 3.971 10 H 0.117 0.883 11 C -0.186 4.186 12 C -0.160 4.160 13 H 0.117 0.883 14 C 0.012 3.988 15 F -0.222 7.222 16 C -0.161 4.161 17 S 0.367 5.633 18 H 0.245 0.755 19 H 0.135 0.865 20 H -0.198 1.198 21 H -0.193 1.193 22 H 0.193 0.807 23 H 0.266 0.734 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.086 4.008 -2.503 6.247 hybrid contribution -0.499 -1.220 0.580 1.440 sum 3.587 2.788 -1.923 4.934 Atomic orbital electron populations 1.86478 1.16990 1.82134 1.50258 1.24253 0.84890 1.09442 0.94244 0.94087 0.79142 0.75822 0.87435 1.25708 1.13214 0.99107 1.05203 1.21419 0.97740 0.93731 0.91895 1.66468 1.18118 1.34968 1.11193 1.24032 0.94841 0.93951 0.92824 1.44141 1.53821 1.14737 1.18539 1.22533 0.97523 0.84475 0.92549 0.88317 1.23619 0.98061 1.00385 0.96514 1.22923 0.98280 1.00793 0.94025 0.88344 1.22228 0.90219 0.98683 0.87717 1.92738 1.67340 1.85527 1.76595 1.23310 0.95915 1.02170 0.94672 1.83779 1.50961 1.12487 1.16061 0.75509 0.86503 1.19751 1.19320 0.80700 0.73391 0.88606 0.92270 0.88971 0.88890 0.89525 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.32 12.87 -148.98 -1.92 -2.24 15 2 C -0.01 0.00 2.99 71.24 0.21 0.21 15 3 Si 0.73 -1.10 31.05 68.60 2.13 1.03 15 4 C -0.31 -0.54 5.74 24.57 0.14 -0.40 15 5 C 0.10 0.50 11.22 83.54 0.94 1.44 15 6 N -0.58 -3.92 9.84 -202.03 -1.99 -5.91 15 7 C 0.31 0.70 8.09 179.32 1.45 2.15 15 8 N -0.67 2.02 5.51 -327.60 -1.81 0.21 15 9 C 0.14 -0.38 4.37 45.58 0.20 -0.18 15 10 H 0.10 0.18 7.67 -2.39 -0.02 0.16 15 11 C -0.15 0.39 7.44 31.18 0.23 0.63 15 12 C -0.14 0.67 4.10 -10.27 -0.04 0.62 15 13 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 15 14 C 0.07 -0.30 7.35 71.98 0.53 0.22 15 15 F -0.24 -1.03 17.36 44.97 0.78 -0.24 15 16 C -0.12 0.95 7.39 31.12 0.23 1.18 15 17 S 0.12 -0.09 20.57 -56.49 -1.16 -1.25 15 18 H 0.39 -2.73 8.70 -74.05 -0.64 -3.38 15 19 H 0.12 0.07 7.96 -2.39 -0.02 0.05 15 20 H -0.27 -1.22 7.11 99.48 0.71 -0.51 15 21 H -0.27 -0.76 7.11 99.48 0.71 -0.05 15 22 H 0.18 0.60 8.06 -2.91 -0.02 0.58 15 23 H 0.43 -3.60 8.85 -92.71 -0.82 -4.42 15 24 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 15 25 H 0.06 0.07 8.14 -2.39 -0.02 0.06 15 26 H 0.09 -0.74 7.94 -2.39 -0.02 -0.76 15 27 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 15 28 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 15 29 H 0.11 -1.32 8.08 -2.39 -0.02 -1.34 15 Total: 0.00 -14.02 267.88 -0.32 -14.34 By element: Atomic # 1 Polarization: -11.56 SS G_CDS: -0.25 Total: -11.81 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 3.89 Total: 5.88 kcal Atomic # 7 Polarization: -1.91 SS G_CDS: -3.79 Total: -5.70 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -1.92 Total: -2.24 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.78 Total: -0.24 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: 2.13 Total: 1.03 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.16 Total: -1.25 kcal Total: -14.02 -0.32 -14.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15744754_15704118.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.026 kcal (2) G-P(sol) polarization free energy of solvation -14.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds