Wall clock time and date at job start Mon Mar 8 2021 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38405 * 119.99928 * 2 1 4 4 N 1.32494 * 119.22088 * 179.73398 * 3 2 1 5 5 C 1.32272 * 120.74414 * 179.75955 * 4 3 2 6 6 C 1.38606 * 119.19379 * 0.50690 * 5 4 3 7 7 C 1.50706 * 120.72111 * 179.77270 * 6 5 4 8 8 O 1.42895 * 109.47230 * 244.97484 * 7 6 5 9 9 Si 1.86305 * 109.46954 * 4.97241 * 7 6 5 10 10 C 1.38603 * 118.56259 * 359.74450 * 6 5 4 11 11 N 1.32283 * 119.19111 * 0.02562 * 10 6 5 12 12 C 1.46499 * 120.00136 * 180.02562 * 2 1 3 13 13 H 1.09004 * 109.46973 * 179.97438 * 12 2 1 14 14 C 1.52996 * 109.47349 * 299.99631 * 12 2 1 15 15 C 1.52992 * 109.47467 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47082 * 299.99930 * 15 14 12 17 17 H 1.08998 * 109.47212 * 300.00489 * 16 15 14 18 18 C 1.50700 * 109.47218 * 180.02562 * 16 15 14 19 19 C 1.38237 * 119.99814 * 299.72512 * 18 16 15 20 20 C 1.38241 * 119.99764 * 179.78836 * 19 18 16 21 21 C 1.38235 * 119.99736 * 0.44513 * 20 19 18 22 22 C 1.38230 * 120.00362 * 359.80849 * 21 20 19 23 23 C 1.38234 * 119.99860 * 359.97438 * 22 21 20 24 24 C 1.52996 * 109.46934 * 60.00126 * 16 15 14 25 25 C 1.52998 * 109.47194 * 59.99930 * 12 2 1 26 26 H 1.08996 * 109.47008 * 90.00343 * 1 2 3 27 27 H 1.08997 * 109.46865 * 210.00028 * 1 2 3 28 28 H 1.08998 * 109.47058 * 329.99541 * 1 2 3 29 29 H 1.07997 * 120.40668 * 180.22914 * 5 4 3 30 30 H 1.08997 * 109.47342 * 124.97018 * 7 6 5 31 31 H 0.96701 * 114.00484 * 59.99460 * 8 7 6 32 32 H 1.48504 * 110.00045 * 58.68206 * 9 7 6 33 33 H 1.48501 * 110.00061 * 180.02562 * 9 7 6 34 34 H 1.08000 * 120.40445 * 179.97438 * 10 6 5 35 35 H 1.09009 * 109.47102 * 300.00533 * 14 12 2 36 36 H 1.08998 * 109.47017 * 59.99612 * 14 12 2 37 37 H 1.08998 * 109.47610 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.47497 * 59.99687 * 15 14 12 39 39 H 1.08005 * 120.00139 * 0.02562 * 19 18 16 40 40 H 1.08004 * 119.99564 * 180.27746 * 20 19 18 41 41 H 1.08000 * 119.99324 * 179.83598 * 21 20 19 42 42 H 1.07992 * 120.00429 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.00005 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.47587 * 180.02562 * 24 16 15 45 45 H 1.09004 * 109.47529 * 60.00064 * 24 16 15 46 46 H 1.09004 * 109.47239 * 299.99932 * 25 12 2 47 47 H 1.08998 * 109.47156 * 60.00056 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1986 0.0000 4 7 3.4818 1.1806 0.0054 5 6 4.1734 2.3082 0.0008 6 6 3.4954 3.5171 0.0009 7 6 4.2489 4.8223 0.0009 8 8 3.9936 5.5197 1.2217 9 14 6.0748 4.4852 -0.1516 10 6 2.1095 3.4997 0.0005 11 7 1.4789 2.3369 0.0004 12 6 2.1975 -1.2687 -0.0006 13 1 3.2692 -1.0695 -0.0009 14 6 1.8280 -2.0715 1.2483 15 6 2.5935 -3.3962 1.2481 16 6 2.2244 -4.1983 -0.0015 17 1 1.1528 -4.3978 -0.0018 18 6 2.9779 -5.5034 -0.0015 19 6 4.3602 -5.5034 -0.0066 20 6 5.0515 -6.7006 -0.0022 21 6 4.3602 -7.8977 -0.0018 22 6 2.9779 -7.8977 -0.0019 23 6 2.2868 -6.7006 -0.0019 24 6 2.5939 -3.3955 -1.2504 25 6 1.8279 -2.0705 -1.2501 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 5.2532 2.2871 0.0015 30 1 3.9204 5.4315 -0.8411 31 1 4.2616 5.0356 2.0147 32 1 6.3497 3.7324 -1.4018 33 1 6.8292 5.7644 -0.1522 34 1 1.5513 4.4242 0.0010 35 1 2.0913 -1.5003 2.1386 36 1 0.7564 -2.2707 1.2483 37 1 2.3299 -3.9684 2.1376 38 1 3.6650 -3.1967 1.2483 39 1 4.9003 -4.5680 -0.0103 40 1 6.1315 -6.7005 -0.0017 41 1 4.9003 -8.8329 -0.0010 42 1 2.4379 -8.8329 -0.0021 43 1 1.2068 -6.7006 -0.0024 44 1 2.3306 -3.9666 -2.1407 45 1 3.6656 -3.1959 -1.2502 46 1 0.7562 -2.2697 -1.2502 47 1 2.0912 -1.4985 -2.1399 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15753750_12175864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:20:47 Heat of formation + Delta-G solvation = 61.764618 kcal Electronic energy + Delta-G solvation = -27350.632941 eV Core-core repulsion = 23693.195536 eV Total energy + Delta-G solvation = -3657.437405 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.17771 -40.87854 -39.43870 -37.98610 -36.70116 -34.78306 -33.38679 -32.23208 -31.78906 -31.75159 -29.36880 -28.27333 -26.19330 -25.39113 -24.18546 -23.66979 -23.50272 -22.71600 -21.46945 -20.36313 -18.98446 -18.87688 -17.89988 -17.80626 -16.69105 -16.60788 -16.22496 -16.14600 -15.99797 -15.62131 -15.57264 -15.20097 -14.90211 -14.64938 -14.56163 -14.52677 -14.12506 -14.08222 -13.94007 -13.80932 -13.26126 -13.16296 -13.07827 -13.00405 -12.55953 -12.26667 -12.23848 -12.13607 -11.90241 -11.83193 -11.72563 -11.54512 -11.51312 -11.13369 -10.97905 -10.52123 -10.00825 -9.79038 -9.55128 -8.88500 -5.00055 0.05026 0.13876 0.48063 0.52892 1.32037 1.60300 1.64671 1.98418 2.78271 2.90142 3.14531 3.46750 3.56421 3.62448 3.68641 3.73587 3.78876 3.79868 3.94669 4.16385 4.21777 4.22695 4.26794 4.28998 4.31337 4.35580 4.47589 4.48353 4.52583 4.55717 4.63541 4.65161 4.68172 4.74731 4.81462 4.84492 4.90902 5.02958 5.08729 5.13136 5.16495 5.20567 5.23516 5.28789 5.36903 5.44058 5.62025 5.67050 5.77800 5.82926 5.86419 6.15904 6.35367 6.78503 7.20847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.581 5.581 3 C 0.550 3.450 4 N -0.579 5.579 5 C 0.196 3.804 6 C -0.291 4.291 7 C -0.046 4.046 8 O -0.554 6.554 9 Si 0.767 3.233 10 C 0.212 3.788 11 N -0.587 5.587 12 C 0.156 3.844 13 H 0.097 0.903 14 C -0.119 4.119 15 C -0.100 4.100 16 C -0.042 4.042 17 H 0.085 0.915 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.100 4.100 25 C -0.119 4.119 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.189 0.811 30 H 0.113 0.887 31 H 0.394 0.606 32 H -0.285 1.285 33 H -0.295 1.295 34 H 0.181 0.819 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 -2.405 1.899 3.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.296 5.296 3 C 0.195 3.805 4 N -0.302 5.302 5 C 0.028 3.972 6 C -0.299 4.299 7 C -0.158 4.158 8 O -0.362 6.362 9 Si 0.673 3.327 10 C 0.044 3.956 11 N -0.310 5.310 12 C 0.053 3.947 13 H 0.115 0.885 14 C -0.157 4.157 15 C -0.138 4.138 16 C -0.060 4.060 17 H 0.103 0.897 18 C -0.082 4.082 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.157 4.157 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.205 0.795 30 H 0.130 0.870 31 H 0.244 0.756 32 H -0.212 1.212 33 H -0.223 1.223 34 H 0.198 0.802 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.483 -2.922 1.035 3.137 hybrid contribution -0.118 0.977 -0.481 1.096 sum 0.365 -1.945 0.554 2.055 Atomic orbital electron populations 1.21688 0.77096 1.03690 1.01955 1.46382 1.06255 1.01321 1.75624 1.19614 0.85673 0.86960 0.88253 1.67898 1.06954 1.32204 1.23096 1.23165 1.00641 0.86201 0.87147 1.21748 0.96780 0.97851 1.13520 1.24787 1.10082 0.90715 0.90190 1.86476 1.87241 1.46673 1.15819 0.93980 0.73013 0.80251 0.85451 1.23149 0.91739 0.95234 0.85450 1.68010 1.41359 0.98358 1.23228 1.21208 0.97454 0.80801 0.95269 0.88499 1.21828 1.01330 0.95746 0.96820 1.21486 1.00511 0.94438 0.97344 1.20166 0.99620 0.90965 0.95239 0.89700 1.19999 0.93919 0.95002 0.99258 1.21212 0.94050 0.98531 1.00437 1.21433 1.00804 0.92706 0.99914 1.21430 0.94814 0.98813 1.00599 1.21420 0.94749 0.98747 0.99936 1.21329 1.00567 0.92147 1.00740 1.21498 1.00432 0.94439 0.97447 1.21830 1.01287 0.95764 0.96854 0.92908 0.89254 0.91045 0.79505 0.87009 0.75574 1.21154 1.22292 0.80249 0.92223 0.90686 0.91264 0.91473 0.85244 0.84949 0.85071 0.84944 0.85034 0.91503 0.91547 0.90826 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.01 9.50 127.77 1.21 1.20 16 2 N -0.58 -1.81 2.86 -711.65 -2.04 -3.85 16 3 C 0.55 3.70 8.17 261.49 2.14 5.83 16 4 N -0.58 -3.18 8.85 -197.99 -1.75 -4.93 16 5 C 0.20 0.16 9.92 84.71 0.84 1.00 16 6 C -0.29 -0.05 5.36 -19.69 -0.11 -0.16 16 7 C -0.05 0.11 2.83 71.24 0.20 0.31 16 8 O -0.55 0.92 12.85 -148.98 -1.91 -0.99 16 9 Si 0.77 -2.87 29.88 68.60 2.05 -0.82 16 10 C 0.21 0.63 10.99 84.71 0.93 1.57 16 11 N -0.59 -4.03 9.11 -197.99 -1.80 -5.83 16 12 C 0.16 0.03 2.54 44.99 0.11 0.15 16 13 H 0.10 0.29 6.76 -2.38 -0.02 0.27 16 14 C -0.12 0.25 5.18 30.59 0.16 0.41 16 15 C -0.10 0.27 5.02 30.59 0.15 0.42 16 16 C -0.04 0.10 2.36 -11.54 -0.03 0.08 16 17 H 0.08 -0.29 7.88 -2.39 -0.02 -0.31 16 18 C -0.08 -0.04 4.78 -19.87 -0.09 -0.14 16 19 C -0.12 -0.12 8.71 22.27 0.19 0.07 16 20 C -0.13 -0.18 10.05 22.27 0.22 0.04 16 21 C -0.14 -0.22 10.05 22.27 0.22 0.01 16 22 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 23 C -0.13 -0.13 9.67 22.27 0.22 0.09 16 24 C -0.10 0.21 5.02 30.61 0.15 0.36 16 25 C -0.12 0.15 5.21 30.61 0.16 0.31 16 26 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H 0.09 -0.36 6.43 -2.39 -0.02 -0.38 16 28 H 0.07 0.15 7.33 -2.39 -0.02 0.13 16 29 H 0.19 -0.98 5.07 -2.91 -0.01 -0.99 16 30 H 0.11 -0.20 7.96 -2.39 -0.02 -0.22 16 31 H 0.39 -3.61 8.70 -74.06 -0.64 -4.25 16 32 H -0.28 -0.36 7.11 99.48 0.71 0.35 16 33 H -0.30 -1.13 7.11 99.48 0.71 -0.42 16 34 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 35 H 0.06 0.00 8.14 -2.38 -0.02 -0.01 16 36 H 0.07 -0.27 6.66 -2.39 -0.02 -0.28 16 37 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.07 -0.14 7.41 -2.39 -0.02 -0.15 16 39 H 0.13 -0.19 7.11 -2.91 -0.02 -0.21 16 40 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 41 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 42 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 43 H 0.13 -0.28 7.95 -2.91 -0.02 -0.31 16 44 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.07 -0.09 7.38 -2.38 -0.02 -0.11 16 46 H 0.07 -0.18 7.67 -2.38 -0.02 -0.20 16 47 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 Total: 0.00 -14.89 370.42 1.83 -13.07 By element: Atomic # 1 Polarization: -8.60 SS G_CDS: 0.36 Total: -8.24 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.92 Total: 11.60 kcal Atomic # 7 Polarization: -9.01 SS G_CDS: -5.59 Total: -14.61 kcal Atomic # 8 Polarization: 0.92 SS G_CDS: -1.91 Total: -0.99 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.05 Total: -0.82 kcal Total: -14.89 1.83 -13.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_12175864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.830 kcal (2) G-P(sol) polarization free energy of solvation -14.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds