Wall clock time and date at job start Mon Mar 8 2021 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39008 * 119.99776 * 2 1 4 4 N 1.32399 * 119.70614 * 184.97886 * 3 2 1 5 5 C 1.31971 * 121.61774 * 180.02562 * 4 3 2 6 6 C 1.38014 * 120.86181 * 359.74298 * 5 4 3 7 7 C 1.50704 * 120.33802 * 180.28318 * 6 5 4 8 8 O 1.42895 * 109.47325 * 245.24860 * 7 6 5 9 9 Si 1.86295 * 109.46980 * 5.25289 * 7 6 5 10 10 C 1.38885 * 119.32950 * 0.53565 * 6 5 4 11 11 C 1.38307 * 118.50297 * 359.47506 * 10 6 5 12 12 C 1.46498 * 120.00554 * 180.02562 * 2 1 3 13 13 H 1.08991 * 109.47301 * 179.97438 * 12 2 1 14 14 C 1.52997 * 109.46743 * 299.99959 * 12 2 1 15 15 C 1.53003 * 109.46695 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47324 * 299.99707 * 15 14 12 17 17 H 1.09001 * 109.47330 * 299.99968 * 16 15 14 18 18 C 1.50704 * 109.47132 * 180.02562 * 16 15 14 19 19 C 1.38233 * 119.99910 * 299.73083 * 18 16 15 20 20 C 1.38238 * 120.00054 * 179.80897 * 19 18 16 21 21 C 1.38234 * 119.99569 * 0.42252 * 20 19 18 22 22 C 1.38242 * 120.00095 * 359.80780 * 21 20 19 23 23 C 1.38226 * 119.99841 * 0.02562 * 22 21 20 24 24 C 1.53000 * 109.46793 * 60.00162 * 16 15 14 25 25 C 1.52994 * 109.47384 * 299.99759 * 24 16 15 26 26 H 1.08997 * 109.47402 * 89.99519 * 1 2 3 27 27 H 1.09005 * 109.47087 * 209.99456 * 1 2 3 28 28 H 1.08997 * 109.47546 * 329.99526 * 1 2 3 29 29 H 1.08008 * 119.56387 * 180.02562 * 5 4 3 30 30 H 1.09008 * 109.46802 * 125.25090 * 7 6 5 31 31 H 0.96700 * 114.00307 * 60.00275 * 8 7 6 32 32 H 1.48500 * 110.00307 * 58.67621 * 9 7 6 33 33 H 1.48503 * 109.99885 * 179.97438 * 9 7 6 34 34 H 1.08002 * 120.75213 * 179.75767 * 10 6 5 35 35 H 1.07998 * 120.44980 * 180.23278 * 11 10 6 36 36 H 1.08992 * 109.47415 * 299.99627 * 14 12 2 37 37 H 1.09001 * 109.47028 * 60.00225 * 14 12 2 38 38 H 1.08994 * 109.47549 * 59.99931 * 15 14 12 39 39 H 1.09003 * 109.46992 * 180.02562 * 15 14 12 40 40 H 1.08002 * 120.00352 * 359.97438 * 19 18 16 41 41 H 1.07997 * 120.00185 * 180.20199 * 20 19 18 42 42 H 1.07996 * 120.00157 * 179.79177 * 21 20 19 43 43 H 1.08000 * 119.99601 * 179.97438 * 22 21 20 44 44 H 1.08003 * 119.99913 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47127 * 60.00294 * 24 16 15 46 46 H 1.08996 * 109.46975 * 179.97438 * 24 16 15 47 47 H 1.08994 * 109.47583 * 300.00322 * 25 24 16 48 48 H 1.09003 * 109.47323 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2039 0.0000 4 7 3.4802 1.1993 -0.0998 5 6 4.1776 2.3196 -0.1031 6 6 3.5496 3.5449 -0.0072 7 6 4.3572 4.8172 -0.0185 8 8 4.2309 5.4729 1.2448 9 14 6.1485 4.4128 -0.3320 10 6 2.1662 3.5932 0.1053 11 6 1.4620 2.4028 0.1060 12 6 2.1976 -1.2686 -0.0006 13 1 3.2691 -1.0694 -0.0009 14 6 1.8280 -2.0714 1.2483 15 6 2.5927 -3.3967 1.2474 16 6 2.2225 -4.1983 -0.0022 17 1 1.1508 -4.3972 -0.0020 18 6 2.9752 -5.5039 -0.0027 19 6 4.3575 -5.5047 -0.0084 20 6 5.0480 -6.7023 -0.0049 21 6 4.3561 -7.8990 -0.0046 22 6 2.9737 -7.8981 -0.0037 23 6 2.2833 -6.7006 -0.0037 24 6 2.5920 -3.3954 -1.2511 25 6 1.8274 -2.0702 -1.2502 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 5.2537 2.2773 -0.1866 30 1 3.9895 5.4739 -0.8071 31 1 4.5397 4.9456 1.9943 32 1 6.2896 3.7022 -1.6283 33 1 6.9556 5.6593 -0.3462 34 1 1.6514 4.5393 0.1857 35 1 0.3852 2.4040 0.1880 36 1 2.0913 -1.5003 2.1385 37 1 0.7564 -2.2707 1.2482 38 1 3.6643 -3.1979 1.2472 39 1 2.3290 -3.9689 2.1369 40 1 4.8982 -4.5697 -0.0129 41 1 6.1280 -6.7029 -0.0061 42 1 4.8955 -8.8346 -0.0053 43 1 2.4332 -8.8331 -0.0039 44 1 1.2033 -6.6999 -0.0035 45 1 3.6638 -3.1965 -1.2512 46 1 2.3288 -3.9666 -2.1412 47 1 0.7558 -2.2690 -1.2501 48 1 2.0910 -1.4980 -2.1398 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15753750_13915762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:20:53 Heat of formation + Delta-G solvation = 35.560273 kcal Electronic energy + Delta-G solvation = -27199.600347 eV Core-core repulsion = 23606.452547 eV Total energy + Delta-G solvation = -3593.147800 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56743 -40.77673 -39.34509 -37.87930 -36.59189 -33.46702 -33.24898 -31.80664 -31.77811 -31.50166 -29.35834 -28.08999 -25.77820 -24.71359 -23.87706 -23.68722 -23.35473 -22.33128 -21.34089 -20.38043 -18.67534 -18.23067 -17.82619 -17.53021 -16.58159 -16.36121 -16.15614 -15.99383 -15.79130 -15.68000 -15.51237 -15.22786 -14.89555 -14.56620 -14.32734 -14.25098 -14.15357 -14.08334 -13.95322 -13.70114 -13.34682 -13.25967 -13.10889 -13.03020 -12.58565 -12.32306 -12.25021 -12.16103 -11.97113 -11.78589 -11.55800 -11.48429 -11.13897 -10.84884 -10.63951 -10.35588 -10.27057 -9.77860 -9.54439 -8.49874 -5.01745 0.28569 0.46281 0.49090 0.54180 1.33376 1.65721 1.88478 2.00630 2.88938 2.91211 3.42173 3.53875 3.59832 3.68462 3.80309 3.81588 3.89323 4.04654 4.07988 4.13731 4.16387 4.22105 4.23888 4.26633 4.28319 4.33183 4.40551 4.48250 4.48853 4.54128 4.57401 4.61626 4.67103 4.69948 4.74706 4.79239 4.87806 5.02186 5.04739 5.06914 5.12328 5.13456 5.18863 5.22004 5.34056 5.35504 5.39064 5.62021 5.63301 5.67778 5.77298 5.97138 6.14561 6.40598 6.61744 7.16690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.605 5.605 3 C 0.410 3.590 4 N -0.538 5.538 5 C 0.157 3.843 6 C -0.238 4.238 7 C -0.051 4.051 8 O -0.543 6.543 9 Si 0.679 3.321 10 C -0.004 4.004 11 C -0.241 4.241 12 C 0.151 3.849 13 H 0.107 0.893 14 C -0.128 4.128 15 C -0.106 4.106 16 C -0.048 4.048 17 H 0.078 0.922 18 C -0.076 4.076 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.106 4.106 25 C -0.127 4.127 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.111 0.889 31 H 0.378 0.622 32 H -0.256 1.256 33 H -0.254 1.254 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -2.228 1.568 3.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.316 5.316 3 C 0.176 3.824 4 N -0.254 5.254 5 C 0.000 4.000 6 C -0.243 4.243 7 C -0.163 4.163 8 O -0.348 6.348 9 Si 0.581 3.419 10 C -0.030 4.030 11 C -0.265 4.265 12 C 0.048 3.952 13 H 0.125 0.875 14 C -0.167 4.167 15 C -0.144 4.144 16 C -0.066 4.066 17 H 0.096 0.904 18 C -0.076 4.076 19 C -0.133 4.133 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.165 4.165 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.171 0.829 30 H 0.128 0.872 31 H 0.225 0.775 32 H -0.181 1.181 33 H -0.179 1.179 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.513 -2.605 0.588 2.719 hybrid contribution -1.128 0.819 -0.233 1.413 sum -1.641 -1.785 0.355 2.451 Atomic orbital electron populations 1.21731 0.78779 1.03187 1.01705 1.46476 1.04937 1.02518 1.77692 1.18365 0.88346 0.85934 0.89765 1.67109 1.06279 1.31137 1.20913 1.22178 0.98768 0.86623 0.92464 1.20962 0.95595 0.96255 1.11536 1.24773 1.09180 0.93127 0.89257 1.86490 1.87976 1.44774 1.15570 0.94932 0.76600 0.83538 0.86784 1.21177 0.93002 0.97967 0.90867 1.21503 1.01230 0.91733 1.12077 1.21120 0.98253 0.81757 0.94072 0.87467 1.21922 1.00649 0.96033 0.98058 1.21548 1.00691 0.94824 0.97335 1.20214 0.99380 0.91573 0.95472 0.90403 1.19848 0.93811 0.94548 0.99430 1.21022 0.93742 0.98125 1.00369 1.21187 1.00001 0.92563 0.99881 1.21188 0.94473 0.98191 1.00472 1.21172 0.94496 0.98040 0.99958 1.21083 0.99762 0.92046 1.00749 1.21551 1.00700 0.94869 0.97324 1.21901 1.00587 0.95951 0.98087 0.92843 0.90683 0.91033 0.82949 0.87173 0.77466 1.18090 1.17852 0.84781 0.84787 0.91450 0.91720 0.91324 0.91387 0.86066 0.86067 0.86156 0.86108 0.86222 0.91343 0.91444 0.91798 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.17 9.34 59.85 0.56 0.39 16 2 N -0.60 -0.21 2.88 -174.08 -0.50 -0.71 16 3 C 0.41 0.80 7.37 -155.01 -1.14 -0.34 16 4 N -0.54 -1.42 8.85 -12.44 -0.11 -1.53 16 5 C 0.16 0.18 9.84 -17.57 -0.17 0.01 16 6 C -0.24 -0.18 5.36 -104.46 -0.56 -0.74 16 7 C -0.05 0.00 2.82 36.01 0.10 0.10 16 8 O -0.54 -0.26 12.84 -35.23 -0.45 -0.71 16 9 Si 0.68 -0.50 29.83 -169.99 -5.07 -5.57 16 10 C 0.00 0.00 9.84 -39.32 -0.39 -0.39 16 11 C -0.24 -0.23 9.27 -39.22 -0.36 -0.59 16 12 C 0.15 -0.02 2.55 -67.93 -0.17 -0.19 16 13 H 0.11 0.16 6.82 -51.93 -0.35 -0.19 16 14 C -0.13 0.12 5.18 -26.73 -0.14 -0.01 16 15 C -0.11 0.11 5.02 -26.73 -0.13 -0.03 16 16 C -0.05 0.04 2.36 -91.77 -0.22 -0.18 16 17 H 0.08 -0.08 7.88 -51.93 -0.41 -0.49 16 18 C -0.08 -0.04 4.78 -104.62 -0.50 -0.54 16 19 C -0.11 -0.08 8.71 -39.58 -0.34 -0.42 16 20 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 21 C -0.13 -0.11 10.05 -39.58 -0.40 -0.51 16 22 C -0.12 -0.10 10.05 -39.58 -0.40 -0.49 16 23 C -0.12 -0.09 9.67 -39.59 -0.38 -0.47 16 24 C -0.11 0.08 5.01 -26.73 -0.13 -0.05 16 25 C -0.13 0.08 5.20 -26.73 -0.14 -0.06 16 26 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 27 H 0.07 -0.21 6.43 -51.93 -0.33 -0.55 16 28 H 0.07 -0.19 5.98 -51.93 -0.31 -0.50 16 29 H 0.15 -0.16 4.91 -52.48 -0.26 -0.41 16 30 H 0.11 0.05 7.96 -51.92 -0.41 -0.36 16 31 H 0.38 -1.22 8.70 45.56 0.40 -0.82 16 32 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 33 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 34 H 0.13 -0.02 8.06 -52.49 -0.42 -0.45 16 35 H 0.13 -0.11 6.03 -52.49 -0.32 -0.43 16 36 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.06 -0.09 6.66 -51.93 -0.35 -0.44 16 38 H 0.07 -0.05 7.41 -51.93 -0.38 -0.43 16 39 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 40 H 0.12 -0.06 7.11 -52.49 -0.37 -0.43 16 41 H 0.12 -0.09 8.06 -52.49 -0.42 -0.52 16 42 H 0.12 -0.08 8.06 -52.49 -0.42 -0.51 16 43 H 0.12 -0.09 8.06 -52.49 -0.42 -0.52 16 44 H 0.12 -0.08 7.95 -52.48 -0.42 -0.50 16 45 H 0.07 -0.03 7.38 -51.93 -0.38 -0.41 16 46 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 47 H 0.06 -0.06 7.67 -51.93 -0.40 -0.46 16 48 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 LS Contribution 372.89 15.07 5.62 5.62 Total: 0.00 -5.70 372.89 -13.14 -18.84 By element: Atomic # 1 Polarization: -3.62 SS G_CDS: -7.30 Total: -10.92 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -5.32 Total: -5.01 kcal Atomic # 7 Polarization: -1.63 SS G_CDS: -0.61 Total: -2.24 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -0.45 Total: -0.71 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -5.07 Total: -5.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -5.70 -13.14 -18.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_13915762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.397 kcal (2) G-P(sol) polarization free energy of solvation -5.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds