Wall clock time and date at job start Mon Mar 8 2021 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39008 * 119.99776 * 2 1 4 4 N 1.32399 * 119.70614 * 184.97886 * 3 2 1 5 5 C 1.31971 * 121.61774 * 180.02562 * 4 3 2 6 6 C 1.38014 * 120.86181 * 359.74298 * 5 4 3 7 7 C 1.50704 * 120.33802 * 180.28318 * 6 5 4 8 8 O 1.42895 * 109.47325 * 245.24860 * 7 6 5 9 9 Si 1.86295 * 109.46980 * 5.25289 * 7 6 5 10 10 C 1.38885 * 119.32950 * 0.53565 * 6 5 4 11 11 C 1.38307 * 118.50297 * 359.47506 * 10 6 5 12 12 C 1.46498 * 120.00554 * 180.02562 * 2 1 3 13 13 H 1.08991 * 109.47301 * 179.97438 * 12 2 1 14 14 C 1.52997 * 109.46743 * 299.99959 * 12 2 1 15 15 C 1.53003 * 109.46695 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47324 * 299.99707 * 15 14 12 17 17 H 1.09001 * 109.47330 * 299.99968 * 16 15 14 18 18 C 1.50704 * 109.47132 * 180.02562 * 16 15 14 19 19 C 1.38233 * 119.99910 * 299.73083 * 18 16 15 20 20 C 1.38238 * 120.00054 * 179.80897 * 19 18 16 21 21 C 1.38234 * 119.99569 * 0.42252 * 20 19 18 22 22 C 1.38242 * 120.00095 * 359.80780 * 21 20 19 23 23 C 1.38226 * 119.99841 * 0.02562 * 22 21 20 24 24 C 1.53000 * 109.46793 * 60.00162 * 16 15 14 25 25 C 1.52994 * 109.47384 * 299.99759 * 24 16 15 26 26 H 1.08997 * 109.47402 * 89.99519 * 1 2 3 27 27 H 1.09005 * 109.47087 * 209.99456 * 1 2 3 28 28 H 1.08997 * 109.47546 * 329.99526 * 1 2 3 29 29 H 1.08008 * 119.56387 * 180.02562 * 5 4 3 30 30 H 1.09008 * 109.46802 * 125.25090 * 7 6 5 31 31 H 0.96700 * 114.00307 * 60.00275 * 8 7 6 32 32 H 1.48500 * 110.00307 * 58.67621 * 9 7 6 33 33 H 1.48503 * 109.99885 * 179.97438 * 9 7 6 34 34 H 1.08002 * 120.75213 * 179.75767 * 10 6 5 35 35 H 1.07998 * 120.44980 * 180.23278 * 11 10 6 36 36 H 1.08992 * 109.47415 * 299.99627 * 14 12 2 37 37 H 1.09001 * 109.47028 * 60.00225 * 14 12 2 38 38 H 1.08994 * 109.47549 * 59.99931 * 15 14 12 39 39 H 1.09003 * 109.46992 * 180.02562 * 15 14 12 40 40 H 1.08002 * 120.00352 * 359.97438 * 19 18 16 41 41 H 1.07997 * 120.00185 * 180.20199 * 20 19 18 42 42 H 1.07996 * 120.00157 * 179.79177 * 21 20 19 43 43 H 1.08000 * 119.99601 * 179.97438 * 22 21 20 44 44 H 1.08003 * 119.99913 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47127 * 60.00294 * 24 16 15 46 46 H 1.08996 * 109.46975 * 179.97438 * 24 16 15 47 47 H 1.08994 * 109.47583 * 300.00322 * 25 24 16 48 48 H 1.09003 * 109.47323 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2039 0.0000 4 7 3.4802 1.1993 -0.0998 5 6 4.1776 2.3196 -0.1031 6 6 3.5496 3.5449 -0.0072 7 6 4.3572 4.8172 -0.0185 8 8 4.2309 5.4729 1.2448 9 14 6.1485 4.4128 -0.3320 10 6 2.1662 3.5932 0.1053 11 6 1.4620 2.4028 0.1060 12 6 2.1976 -1.2686 -0.0006 13 1 3.2691 -1.0694 -0.0009 14 6 1.8280 -2.0714 1.2483 15 6 2.5927 -3.3967 1.2474 16 6 2.2225 -4.1983 -0.0022 17 1 1.1508 -4.3972 -0.0020 18 6 2.9752 -5.5039 -0.0027 19 6 4.3575 -5.5047 -0.0084 20 6 5.0480 -6.7023 -0.0049 21 6 4.3561 -7.8990 -0.0046 22 6 2.9737 -7.8981 -0.0037 23 6 2.2833 -6.7006 -0.0037 24 6 2.5920 -3.3954 -1.2511 25 6 1.8274 -2.0702 -1.2502 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 5.2537 2.2773 -0.1866 30 1 3.9895 5.4739 -0.8071 31 1 4.5397 4.9456 1.9943 32 1 6.2896 3.7022 -1.6283 33 1 6.9556 5.6593 -0.3462 34 1 1.6514 4.5393 0.1857 35 1 0.3852 2.4040 0.1880 36 1 2.0913 -1.5003 2.1385 37 1 0.7564 -2.2707 1.2482 38 1 3.6643 -3.1979 1.2472 39 1 2.3290 -3.9689 2.1369 40 1 4.8982 -4.5697 -0.0129 41 1 6.1280 -6.7029 -0.0061 42 1 4.8955 -8.8346 -0.0053 43 1 2.4332 -8.8331 -0.0039 44 1 1.2033 -6.6999 -0.0035 45 1 3.6638 -3.1965 -1.2512 46 1 2.3288 -3.9666 -2.1412 47 1 0.7558 -2.2690 -1.2501 48 1 2.0910 -1.4980 -2.1398 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15753750_13915762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:20:52 Heat of formation + Delta-G solvation = 44.658515 kcal Electronic energy + Delta-G solvation = -27199.205817 eV Core-core repulsion = 23606.452547 eV Total energy + Delta-G solvation = -3592.753270 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.58773 -40.77046 -39.33568 -37.88566 -36.57369 -33.50598 -33.25305 -31.78109 -31.76778 -31.50534 -29.31536 -28.05130 -25.77141 -24.73922 -23.87935 -23.64731 -23.36059 -22.35022 -21.33008 -20.34410 -18.67848 -18.24327 -17.81507 -17.54355 -16.58890 -16.36917 -16.14725 -16.01039 -15.76756 -15.66992 -15.50453 -15.17373 -14.87482 -14.54737 -14.38876 -14.26965 -14.17841 -14.08153 -13.89929 -13.69519 -13.35565 -13.23638 -13.00376 -12.98425 -12.56530 -12.34237 -12.23047 -12.11978 -12.09391 -11.76654 -11.52770 -11.45628 -11.10966 -10.87797 -10.67768 -10.37167 -10.32904 -9.80044 -9.55785 -8.50000 -5.00105 0.23992 0.40854 0.47256 0.51938 1.33874 1.63665 1.92285 1.96837 2.83646 2.89328 3.43104 3.59657 3.63530 3.70578 3.80391 3.83309 3.92149 4.04133 4.10786 4.16225 4.20967 4.24659 4.28943 4.29642 4.35192 4.37289 4.48340 4.51376 4.53547 4.54858 4.63879 4.67332 4.68487 4.76282 4.78004 4.84820 4.91831 5.03050 5.06308 5.10322 5.15346 5.17458 5.20042 5.24456 5.33204 5.39008 5.40565 5.61124 5.62293 5.66110 5.77261 6.01425 6.15032 6.38320 6.79821 7.12516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.607 5.607 3 C 0.394 3.606 4 N -0.560 5.560 5 C 0.148 3.852 6 C -0.240 4.240 7 C -0.053 4.053 8 O -0.557 6.557 9 Si 0.764 3.236 10 C -0.012 4.012 11 C -0.244 4.244 12 C 0.154 3.846 13 H 0.089 0.911 14 C -0.119 4.119 15 C -0.101 4.101 16 C -0.040 4.040 17 H 0.085 0.915 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.101 4.101 25 C -0.118 4.118 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.168 0.832 30 H 0.106 0.894 31 H 0.394 0.606 32 H -0.288 1.288 33 H -0.296 1.296 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -2.504 1.989 3.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.318 5.318 3 C 0.160 3.840 4 N -0.277 5.277 5 C -0.009 4.009 6 C -0.245 4.245 7 C -0.164 4.164 8 O -0.365 6.365 9 Si 0.671 3.329 10 C -0.038 4.038 11 C -0.269 4.269 12 C 0.051 3.949 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.139 4.139 16 C -0.059 4.059 17 H 0.103 0.897 18 C -0.082 4.082 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.156 4.156 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.185 0.815 30 H 0.123 0.877 31 H 0.244 0.756 32 H -0.215 1.215 33 H -0.224 1.224 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.391 -2.898 1.034 3.377 hybrid contribution -0.847 0.919 -0.382 1.306 sum -2.238 -1.979 0.652 3.058 Atomic orbital electron populations 1.21885 0.77465 1.04212 1.02200 1.46632 1.05759 1.02113 1.77328 1.18645 0.88434 0.86834 0.90119 1.67126 1.06940 1.31871 1.21759 1.22448 0.99536 0.86548 0.92406 1.21023 0.95771 0.96290 1.11421 1.24833 1.09626 0.92712 0.89247 1.86452 1.88227 1.45570 1.16205 0.93913 0.74158 0.80329 0.84502 1.21381 0.93218 0.98432 0.90767 1.21693 1.02083 0.91380 1.11739 1.21042 0.97341 0.81901 0.94659 0.89302 1.21826 1.01166 0.95594 0.97127 1.21491 1.00406 0.94756 0.97253 1.20155 0.99554 0.90916 0.95243 0.89698 1.20016 0.93904 0.95091 0.99222 1.21201 0.94111 0.98482 1.00527 1.21429 1.00796 0.92713 0.99929 1.21434 0.94828 0.98785 1.00587 1.21429 0.94736 0.98755 0.99880 1.21327 1.00578 0.92116 1.00747 1.21489 1.00349 0.94759 0.97343 1.21806 1.01040 0.95598 0.97202 0.92559 0.89492 0.90212 0.81541 0.87671 0.75644 1.21548 1.22409 0.83885 0.83202 0.92302 0.90695 0.91838 0.91429 0.85452 0.84979 0.85009 0.84851 0.84973 0.91912 0.91707 0.90893 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.38 9.34 127.77 1.19 0.81 16 2 N -0.61 -0.43 2.88 -704.67 -2.03 -2.46 16 3 C 0.39 1.67 7.37 133.06 0.98 2.65 16 4 N -0.56 -3.37 8.85 -193.26 -1.71 -5.08 16 5 C 0.15 0.41 9.84 84.62 0.83 1.24 16 6 C -0.24 -0.41 5.36 -19.76 -0.11 -0.52 16 7 C -0.05 -0.01 2.82 71.24 0.20 0.19 16 8 O -0.56 -0.37 12.84 -148.98 -1.91 -2.28 16 9 Si 0.76 -0.79 29.83 68.60 2.05 1.25 16 10 C -0.01 -0.02 9.84 22.44 0.22 0.20 16 11 C -0.24 -0.43 9.27 22.50 0.21 -0.22 16 12 C 0.15 0.02 2.55 44.99 0.11 0.13 16 13 H 0.09 0.36 6.82 -2.39 -0.02 0.35 16 14 C -0.12 0.25 5.18 30.59 0.16 0.41 16 15 C -0.10 0.20 5.02 30.60 0.15 0.35 16 16 C -0.04 0.08 2.36 -11.54 -0.03 0.05 16 17 H 0.08 -0.26 7.88 -2.39 -0.02 -0.28 16 18 C -0.08 -0.09 4.78 -19.87 -0.09 -0.19 16 19 C -0.13 -0.23 8.71 22.27 0.19 -0.03 16 20 C -0.13 -0.26 10.05 22.27 0.22 -0.04 16 21 C -0.14 -0.27 10.05 22.27 0.22 -0.04 16 22 C -0.13 -0.21 10.05 22.27 0.22 0.01 16 23 C -0.13 -0.17 9.67 22.27 0.22 0.04 16 24 C -0.10 0.13 5.01 30.59 0.15 0.28 16 25 C -0.12 0.13 5.20 30.60 0.16 0.29 16 26 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.09 -0.61 6.43 -2.38 -0.02 -0.62 16 28 H 0.08 -0.49 5.98 -2.39 -0.01 -0.51 16 29 H 0.17 -0.28 4.91 -2.91 -0.01 -0.29 16 30 H 0.11 0.12 7.96 -2.38 -0.02 0.11 16 31 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 32 H -0.29 -1.24 7.11 99.48 0.71 -0.53 16 33 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 34 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 35 H 0.15 -0.36 6.03 -2.91 -0.02 -0.38 16 36 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.07 -0.30 6.66 -2.39 -0.02 -0.31 16 38 H 0.06 -0.05 7.41 -2.39 -0.02 -0.07 16 39 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.13 -0.03 7.11 -2.91 -0.02 -0.05 16 41 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 42 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 43 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 44 H 0.13 -0.26 7.95 -2.91 -0.02 -0.28 16 45 H 0.06 0.00 7.38 -2.39 -0.02 -0.02 16 46 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.07 -0.20 7.67 -2.39 -0.02 -0.22 16 48 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 Total: 0.00 -13.68 372.89 1.97 -11.71 By element: Atomic # 1 Polarization: -9.10 SS G_CDS: 0.35 Total: -8.75 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.23 Total: 5.61 kcal Atomic # 7 Polarization: -3.80 SS G_CDS: -3.74 Total: -7.54 kcal Atomic # 8 Polarization: -0.37 SS G_CDS: -1.91 Total: -2.28 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.05 Total: 1.25 kcal Total: -13.68 1.97 -11.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_13915762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.364 kcal (2) G-P(sol) polarization free energy of solvation -13.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds