Wall clock time and date at job start Mon Mar 8 2021 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38615 * 119.99664 * 2 1 4 4 N 1.29687 * 124.94680 * 180.02562 * 3 2 1 5 5 C 1.32121 * 116.86630 * 179.74423 * 4 3 2 6 6 C 1.33328 * 114.57973 * 0.47261 * 5 4 3 7 7 C 1.50701 * 125.95475 * 179.83341 * 6 5 4 8 8 O 1.42900 * 109.46882 * 119.69032 * 7 6 5 9 9 Si 1.86300 * 109.46948 * 359.69018 * 7 6 5 10 10 S 1.70964 * 124.95057 * 359.97438 * 3 2 1 11 11 C 1.46501 * 120.00358 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.47225 * 179.97438 * 11 2 1 13 13 C 1.53002 * 109.47071 * 300.00229 * 11 2 1 14 14 C 1.52988 * 109.47057 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47318 * 299.99985 * 14 13 11 16 16 H 1.09001 * 109.46893 * 299.99853 * 15 14 13 17 17 C 1.50707 * 109.47195 * 179.97438 * 15 14 13 18 18 C 1.38232 * 120.00040 * 299.72957 * 17 15 14 19 19 C 1.38234 * 120.00049 * 179.76633 * 18 17 15 20 20 C 1.38240 * 119.99548 * 0.47868 * 19 18 17 21 21 C 1.38233 * 120.00087 * 359.79799 * 20 19 18 22 22 C 1.38231 * 120.00282 * 359.94669 * 21 20 19 23 23 C 1.53002 * 109.47044 * 60.00008 * 15 14 13 24 24 C 1.52995 * 109.46887 * 60.00092 * 11 2 1 25 25 H 1.09004 * 109.46950 * 90.00184 * 1 2 3 26 26 H 1.08996 * 109.47045 * 209.99691 * 1 2 3 27 27 H 1.08998 * 109.47136 * 330.00073 * 1 2 3 28 28 H 1.07995 * 122.71548 * 180.28654 * 5 4 3 29 29 H 1.09004 * 109.46875 * 239.68566 * 7 6 5 30 30 H 0.96706 * 114.00057 * 299.99456 * 8 7 6 31 31 H 1.48497 * 110.00010 * 58.68023 * 9 7 6 32 32 H 1.48495 * 109.99824 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.46755 * 300.00174 * 13 11 2 34 34 H 1.09001 * 109.46876 * 59.99730 * 13 11 2 35 35 H 1.09003 * 109.47373 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.47286 * 60.00241 * 14 13 11 37 37 H 1.07996 * 120.00108 * 359.97438 * 18 17 15 38 38 H 1.07995 * 120.00662 * 180.25123 * 19 18 17 39 39 H 1.08003 * 119.99669 * 179.76485 * 20 19 18 40 40 H 1.08001 * 119.99868 * 179.97438 * 21 20 19 41 41 H 1.07993 * 120.00068 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.46755 * 179.97438 * 23 15 14 43 43 H 1.09001 * 109.46876 * 60.00162 * 23 15 14 44 44 H 1.09001 * 109.47254 * 300.00389 * 24 11 2 45 45 H 1.09003 * 109.47384 * 59.99659 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2005 0.0000 4 7 3.4501 1.3124 -0.0005 5 6 3.9432 2.5381 -0.0057 6 6 3.0254 3.5052 0.0003 7 6 3.3011 4.9868 0.0000 8 8 2.7257 5.5781 -1.1667 9 14 5.1416 5.2759 -0.0005 10 16 1.4341 2.7493 -0.0006 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0695 0.0000 13 6 1.8280 -2.0705 1.2502 14 6 2.5925 -3.3956 1.2504 15 6 2.2224 -4.1983 0.0015 16 1 1.1507 -4.3971 0.0018 17 6 2.9761 -5.5034 0.0015 18 6 4.3584 -5.5033 -0.0048 19 6 5.0496 -6.7003 0.0001 20 6 4.3585 -7.8975 0.0012 21 6 2.9761 -7.8976 0.0017 22 6 2.2849 -6.7005 0.0021 23 6 2.5921 -3.3965 -1.2481 24 6 1.8280 -2.0715 -1.2483 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 5.0040 2.7404 -0.0111 29 1 2.8625 5.4381 0.8900 30 1 3.0701 5.2237 -1.9980 31 1 5.7556 4.6379 -1.1926 32 1 5.4267 6.7332 -0.0001 33 1 2.0912 -1.4984 2.1399 34 1 0.7563 -2.2697 1.2502 35 1 2.3296 -3.9667 2.1409 36 1 3.6642 -3.1968 1.2502 37 1 4.8983 -4.5680 -0.0100 38 1 6.1296 -6.7004 -0.0007 39 1 4.8986 -8.8328 0.0011 40 1 2.4362 -8.8329 0.0021 41 1 1.2050 -6.7006 0.0029 42 1 2.3288 -3.9685 -2.1378 43 1 3.6638 -3.1977 -1.2483 44 1 0.7564 -2.2707 -1.2483 45 1 2.0913 -1.5003 -2.1386 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15753750_15704118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:20:57 Heat of formation + Delta-G solvation = 41.807271 kcal Electronic energy + Delta-G solvation = -25621.585455 eV Core-core repulsion = 22117.860792 eV Total energy + Delta-G solvation = -3503.724663 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21507 -40.54324 -39.36205 -37.94863 -36.76636 -33.08028 -31.87247 -31.79218 -31.67117 -29.49364 -28.33330 -25.85858 -24.91663 -23.81127 -23.75268 -23.28455 -21.89059 -20.62333 -20.20398 -19.55430 -17.86010 -17.70724 -17.45012 -16.67135 -16.53800 -16.18755 -15.98797 -15.91808 -15.62608 -15.29361 -15.04262 -14.82676 -14.62384 -14.43426 -14.16540 -14.05329 -13.93842 -13.71425 -13.51861 -13.32258 -13.08539 -12.86316 -12.64500 -12.31849 -12.26192 -12.22295 -11.88501 -11.84145 -11.60004 -11.56637 -11.20094 -10.88587 -10.60229 -10.39163 -10.05485 -9.79518 -9.56573 -8.56729 -4.95656 0.00905 0.14286 0.47158 0.52513 0.79198 1.45201 1.61815 1.80159 1.99718 2.01949 2.89264 3.36173 3.47716 3.53594 3.68803 3.72416 3.85545 3.90700 4.05623 4.11111 4.16440 4.17818 4.22827 4.25176 4.29027 4.38603 4.41872 4.44965 4.46864 4.52454 4.61772 4.64199 4.66472 4.73050 4.82681 4.90401 5.00949 5.05494 5.07362 5.15594 5.17483 5.19387 5.29204 5.33684 5.60285 5.66233 5.70655 5.74835 6.03190 6.12833 6.39261 6.97829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.576 5.576 3 C 0.318 3.682 4 N -0.552 5.552 5 C 0.098 3.902 6 C -0.307 4.307 7 C -0.030 4.030 8 O -0.531 6.531 9 Si 0.698 3.302 10 S 0.120 5.880 11 C 0.156 3.844 12 H 0.106 0.894 13 C -0.128 4.128 14 C -0.106 4.106 15 C -0.048 4.048 16 H 0.079 0.921 17 C -0.077 4.077 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.106 4.106 24 C -0.127 4.127 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.174 0.826 29 H 0.117 0.883 30 H 0.376 0.624 31 H -0.256 1.256 32 H -0.254 1.254 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -2.567 1.415 3.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.294 5.294 3 C -0.050 4.050 4 N -0.276 5.276 5 C -0.053 4.053 6 C -0.430 4.430 7 C -0.141 4.141 8 O -0.337 6.337 9 Si 0.597 3.403 10 S 0.370 5.630 11 C 0.051 3.949 12 H 0.124 0.876 13 C -0.167 4.167 14 C -0.144 4.144 15 C -0.067 4.067 16 H 0.097 0.903 17 C -0.077 4.077 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.166 4.166 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.191 0.809 29 H 0.135 0.865 30 H 0.224 0.776 31 H -0.180 1.180 32 H -0.178 1.178 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.520 -2.132 1.434 2.985 hybrid contribution 0.299 -0.083 -1.082 1.126 sum -1.221 -2.215 0.352 2.553 Atomic orbital electron populations 1.21841 0.77758 1.03663 1.02430 1.46077 1.04895 1.01137 1.77282 1.23721 0.91587 0.92051 0.97690 1.66396 1.08912 1.25001 1.27337 1.21299 1.00407 0.85328 0.98304 1.25877 0.94570 1.00863 1.21699 1.24358 1.11565 0.87206 0.90993 1.86601 1.66351 1.64967 1.15797 0.94916 0.73863 0.82206 0.89314 1.84086 1.09348 0.96389 1.73150 1.21221 0.97965 0.81118 0.94571 0.87605 1.21928 1.00797 0.96095 0.97863 1.21549 1.00721 0.94682 0.97460 1.20220 0.99448 0.91616 0.95383 0.90297 1.19834 0.93797 0.94516 0.99547 1.21018 0.93738 0.98135 1.00369 1.21189 1.00015 0.92561 0.99858 1.21192 0.94483 0.98191 1.00410 1.21174 0.94489 0.98058 0.99936 1.21083 0.99764 0.92031 1.00720 1.21546 1.00703 0.94724 0.97470 1.21907 1.00833 0.96024 0.97838 0.92025 0.89661 0.91201 0.80944 0.86515 0.77572 1.18042 1.17816 0.91222 0.91516 0.91212 0.91273 0.86089 0.86061 0.86140 0.86090 0.86197 0.91254 0.91308 0.91539 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.18 9.47 59.85 0.57 0.39 16 2 N -0.58 -0.11 2.87 -176.26 -0.51 -0.62 16 3 C 0.32 0.66 7.75 -87.68 -0.68 -0.01 16 4 N -0.55 -1.74 9.54 -15.21 -0.15 -1.89 16 5 C 0.10 0.16 10.07 -19.14 -0.19 -0.03 16 6 C -0.31 -0.41 5.93 -36.02 -0.21 -0.62 16 7 C -0.03 -0.01 3.08 36.01 0.11 0.10 16 8 O -0.53 -0.94 12.88 -35.23 -0.45 -1.40 16 9 Si 0.70 -0.59 30.49 -169.99 -5.18 -5.77 16 10 S 0.12 0.17 21.68 -107.50 -2.33 -2.16 16 11 C 0.16 -0.06 2.59 -67.93 -0.18 -0.24 16 12 H 0.11 0.15 7.12 -51.93 -0.37 -0.22 16 13 C -0.13 0.17 5.18 -26.74 -0.14 0.03 16 14 C -0.11 0.14 5.02 -26.74 -0.13 0.00 16 15 C -0.05 0.06 2.36 -91.77 -0.22 -0.16 16 16 H 0.08 -0.12 7.88 -51.93 -0.41 -0.53 16 17 C -0.08 -0.02 4.78 -104.62 -0.50 -0.52 16 18 C -0.11 -0.06 8.71 -39.59 -0.34 -0.41 16 19 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 20 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 21 C -0.12 -0.08 10.05 -39.59 -0.40 -0.47 16 22 C -0.12 -0.06 9.67 -39.58 -0.38 -0.44 16 23 C -0.11 0.12 5.01 -26.76 -0.13 -0.01 16 24 C -0.13 0.15 5.20 -26.76 -0.14 0.01 16 25 H 0.06 -0.16 8.14 -51.93 -0.42 -0.58 16 26 H 0.08 -0.30 6.43 -51.93 -0.33 -0.63 16 27 H 0.07 -0.16 7.04 -51.93 -0.37 -0.52 16 28 H 0.17 -0.08 5.85 -52.49 -0.31 -0.39 16 29 H 0.12 -0.02 7.96 -51.93 -0.41 -0.44 16 30 H 0.38 -0.34 8.70 45.56 0.40 0.05 16 31 H -0.26 -0.29 7.11 56.52 0.40 0.12 16 32 H -0.25 -0.56 7.11 56.52 0.40 -0.16 16 33 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.07 -0.14 6.66 -51.93 -0.35 -0.48 16 35 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 36 H 0.07 -0.06 7.40 -51.93 -0.38 -0.44 16 37 H 0.12 -0.07 7.10 -52.49 -0.37 -0.44 16 38 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 39 H 0.12 -0.10 8.06 -52.48 -0.42 -0.52 16 40 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 41 H 0.12 -0.12 7.95 -52.49 -0.42 -0.53 16 42 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 43 H 0.07 -0.05 7.37 -51.93 -0.38 -0.43 16 44 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 45 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 366.64 15.07 5.53 5.53 Total: 0.00 -5.67 366.64 -13.54 -19.22 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: -6.68 Total: -9.55 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.77 Total: -3.36 kcal Atomic # 7 Polarization: -1.86 SS G_CDS: -0.65 Total: -2.51 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: -0.45 Total: -1.40 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.18 Total: -5.77 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.33 Total: -2.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -5.67 -13.54 -19.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_15704118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.025 kcal (2) G-P(sol) polarization free energy of solvation -5.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds