Wall clock time and date at job start Mon Mar 8 2021 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38615 * 119.99664 * 2 1 4 4 N 1.29687 * 124.94680 * 180.02562 * 3 2 1 5 5 C 1.32121 * 116.86630 * 179.74423 * 4 3 2 6 6 C 1.33328 * 114.57973 * 0.47261 * 5 4 3 7 7 C 1.50701 * 125.95475 * 179.83341 * 6 5 4 8 8 O 1.42900 * 109.46882 * 119.69032 * 7 6 5 9 9 Si 1.86300 * 109.46948 * 359.69018 * 7 6 5 10 10 S 1.70964 * 124.95057 * 359.97438 * 3 2 1 11 11 C 1.46501 * 120.00358 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.47225 * 179.97438 * 11 2 1 13 13 C 1.53002 * 109.47071 * 300.00229 * 11 2 1 14 14 C 1.52988 * 109.47057 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47318 * 299.99985 * 14 13 11 16 16 H 1.09001 * 109.46893 * 299.99853 * 15 14 13 17 17 C 1.50707 * 109.47195 * 179.97438 * 15 14 13 18 18 C 1.38232 * 120.00040 * 299.72957 * 17 15 14 19 19 C 1.38234 * 120.00049 * 179.76633 * 18 17 15 20 20 C 1.38240 * 119.99548 * 0.47868 * 19 18 17 21 21 C 1.38233 * 120.00087 * 359.79799 * 20 19 18 22 22 C 1.38231 * 120.00282 * 359.94669 * 21 20 19 23 23 C 1.53002 * 109.47044 * 60.00008 * 15 14 13 24 24 C 1.52995 * 109.46887 * 60.00092 * 11 2 1 25 25 H 1.09004 * 109.46950 * 90.00184 * 1 2 3 26 26 H 1.08996 * 109.47045 * 209.99691 * 1 2 3 27 27 H 1.08998 * 109.47136 * 330.00073 * 1 2 3 28 28 H 1.07995 * 122.71548 * 180.28654 * 5 4 3 29 29 H 1.09004 * 109.46875 * 239.68566 * 7 6 5 30 30 H 0.96706 * 114.00057 * 299.99456 * 8 7 6 31 31 H 1.48497 * 110.00010 * 58.68023 * 9 7 6 32 32 H 1.48495 * 109.99824 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.46755 * 300.00174 * 13 11 2 34 34 H 1.09001 * 109.46876 * 59.99730 * 13 11 2 35 35 H 1.09003 * 109.47373 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.47286 * 60.00241 * 14 13 11 37 37 H 1.07996 * 120.00108 * 359.97438 * 18 17 15 38 38 H 1.07995 * 120.00662 * 180.25123 * 19 18 17 39 39 H 1.08003 * 119.99669 * 179.76485 * 20 19 18 40 40 H 1.08001 * 119.99868 * 179.97438 * 21 20 19 41 41 H 1.07993 * 120.00068 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.46755 * 179.97438 * 23 15 14 43 43 H 1.09001 * 109.46876 * 60.00162 * 23 15 14 44 44 H 1.09001 * 109.47254 * 300.00389 * 24 11 2 45 45 H 1.09003 * 109.47384 * 59.99659 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2005 0.0000 4 7 3.4501 1.3124 -0.0005 5 6 3.9432 2.5381 -0.0057 6 6 3.0254 3.5052 0.0003 7 6 3.3011 4.9868 0.0000 8 8 2.7257 5.5781 -1.1667 9 14 5.1416 5.2759 -0.0005 10 16 1.4341 2.7493 -0.0006 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0695 0.0000 13 6 1.8280 -2.0705 1.2502 14 6 2.5925 -3.3956 1.2504 15 6 2.2224 -4.1983 0.0015 16 1 1.1507 -4.3971 0.0018 17 6 2.9761 -5.5034 0.0015 18 6 4.3584 -5.5033 -0.0048 19 6 5.0496 -6.7003 0.0001 20 6 4.3585 -7.8975 0.0012 21 6 2.9761 -7.8976 0.0017 22 6 2.2849 -6.7005 0.0021 23 6 2.5921 -3.3965 -1.2481 24 6 1.8280 -2.0715 -1.2483 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 5.0040 2.7404 -0.0111 29 1 2.8625 5.4381 0.8900 30 1 3.0701 5.2237 -1.9980 31 1 5.7556 4.6379 -1.1926 32 1 5.4267 6.7332 -0.0001 33 1 2.0912 -1.4984 2.1399 34 1 0.7563 -2.2697 1.2502 35 1 2.3296 -3.9667 2.1409 36 1 3.6642 -3.1968 1.2502 37 1 4.8983 -4.5680 -0.0100 38 1 6.1296 -6.7004 -0.0007 39 1 4.8986 -8.8328 0.0011 40 1 2.4362 -8.8329 0.0021 41 1 1.2050 -6.7006 0.0029 42 1 2.3288 -3.9685 -2.1378 43 1 3.6638 -3.1977 -1.2483 44 1 0.7564 -2.2707 -1.2483 45 1 2.0913 -1.5003 -2.1386 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15753750_15704118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:20:56 Heat of formation + Delta-G solvation = 50.169062 kcal Electronic energy + Delta-G solvation = -25621.222861 eV Core-core repulsion = 22117.860792 eV Total energy + Delta-G solvation = -3503.362069 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.21344 -40.57858 -39.35555 -38.01293 -36.74962 -33.06376 -31.80595 -31.78687 -31.71119 -29.44565 -28.30597 -25.85889 -24.96183 -23.80860 -23.68139 -23.28289 -21.88400 -20.60024 -20.19482 -19.61688 -17.84037 -17.76689 -17.48956 -16.65387 -16.58370 -16.16019 -15.99259 -15.91671 -15.65021 -15.20857 -15.04391 -14.85782 -14.58277 -14.44873 -14.12848 -13.99469 -13.93907 -13.74892 -13.39983 -13.27273 -13.03169 -12.90520 -12.61402 -12.37170 -12.26061 -12.14559 -11.96253 -11.81280 -11.55022 -11.52194 -11.14612 -10.90483 -10.64172 -10.50054 -10.15899 -9.80392 -9.56315 -8.59761 -4.91474 -0.07869 0.07274 0.46811 0.51580 0.72374 1.44896 1.62863 1.82662 1.91515 1.98098 2.88855 3.36566 3.49202 3.59899 3.71630 3.78166 3.86398 3.91832 4.14941 4.17421 4.20853 4.26842 4.27428 4.33028 4.40516 4.41565 4.45334 4.50322 4.56456 4.61409 4.64576 4.66501 4.73336 4.77946 4.87367 4.94993 5.07988 5.09051 5.15528 5.16894 5.19501 5.23256 5.35988 5.39543 5.60802 5.65825 5.75298 5.76565 6.00192 6.14701 6.42971 6.90046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.576 5.576 3 C 0.310 3.690 4 N -0.578 5.578 5 C 0.090 3.910 6 C -0.310 4.310 7 C -0.040 4.040 8 O -0.549 6.549 9 Si 0.785 3.215 10 S 0.119 5.881 11 C 0.159 3.841 12 H 0.085 0.915 13 C -0.119 4.119 14 C -0.101 4.101 15 C -0.041 4.041 16 H 0.089 0.911 17 C -0.082 4.082 18 C -0.126 4.126 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.101 4.101 24 C -0.118 4.118 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.189 0.811 29 H 0.123 0.877 30 H 0.386 0.614 31 H -0.280 1.280 32 H -0.294 1.294 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -3.044 1.655 3.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.293 5.293 3 C -0.059 4.059 4 N -0.304 5.304 5 C -0.061 4.061 6 C -0.434 4.434 7 C -0.150 4.150 8 O -0.357 6.357 9 Si 0.687 3.313 10 S 0.369 5.631 11 C 0.054 3.946 12 H 0.103 0.897 13 C -0.158 4.158 14 C -0.139 4.139 15 C -0.059 4.059 16 H 0.107 0.893 17 C -0.082 4.082 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.140 4.140 24 C -0.157 4.157 25 H 0.087 0.913 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.206 0.794 29 H 0.140 0.860 30 H 0.235 0.765 31 H -0.206 1.206 32 H -0.222 1.222 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.330 -2.636 1.679 3.899 hybrid contribution 0.537 0.061 -1.180 1.298 sum -1.793 -2.576 0.499 3.178 Atomic orbital electron populations 1.22040 0.76340 1.04641 1.03196 1.46308 1.05780 1.00702 1.76507 1.23956 0.91593 0.92853 0.97532 1.66428 1.09630 1.25814 1.28498 1.21566 1.01275 0.85077 0.98168 1.25975 0.94443 1.01168 1.21789 1.24630 1.12810 0.86676 0.90869 1.86568 1.67090 1.65393 1.16669 0.93869 0.71490 0.78511 0.87419 1.84009 1.09576 0.96164 1.73302 1.21167 0.96882 0.81154 0.95417 0.89719 1.21842 1.01558 0.95573 0.96802 1.21490 1.00315 0.94662 0.97460 1.20172 0.99761 0.90858 0.95115 0.89302 1.20013 0.93828 0.95146 0.99240 1.21192 0.94186 0.98413 1.00587 1.21422 1.00761 0.92761 1.00000 1.21431 0.94879 0.98736 1.00582 1.21434 0.94690 0.98821 0.99850 1.21335 1.00633 0.92041 1.00624 1.21485 1.00268 0.94679 0.97525 1.21818 1.01523 0.95556 0.96815 0.91320 0.87879 0.91051 0.79441 0.85965 0.76478 1.20644 1.22178 0.92186 0.90088 0.91201 0.92016 0.85590 0.85096 0.85056 0.84830 0.84809 0.91385 0.92068 0.90232 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.40 9.47 127.77 1.21 0.81 16 2 N -0.58 -0.23 2.87 -711.58 -2.04 -2.27 16 3 C 0.31 1.44 7.75 179.32 1.39 2.83 16 4 N -0.58 -4.10 9.54 -202.02 -1.93 -6.02 16 5 C 0.09 0.34 10.07 83.54 0.84 1.18 16 6 C -0.31 -0.92 5.93 24.58 0.15 -0.77 16 7 C -0.04 -0.04 3.08 71.24 0.22 0.18 16 8 O -0.55 -2.13 12.88 -148.98 -1.92 -4.04 16 9 Si 0.78 -1.22 30.49 68.60 2.09 0.87 16 10 S 0.12 0.38 21.68 -56.49 -1.22 -0.85 16 11 C 0.16 -0.10 2.59 44.99 0.12 0.02 16 12 H 0.08 0.34 7.12 -2.39 -0.02 0.32 16 13 C -0.12 0.37 5.18 30.59 0.16 0.53 16 14 C -0.10 0.28 5.02 30.59 0.15 0.43 16 15 C -0.04 0.12 2.36 -11.54 -0.03 0.09 16 16 H 0.09 -0.41 7.88 -2.39 -0.02 -0.42 16 17 C -0.08 -0.04 4.78 -19.86 -0.09 -0.14 16 18 C -0.13 -0.20 8.71 22.27 0.19 -0.01 16 19 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 20 C -0.14 -0.24 10.05 22.27 0.22 -0.01 16 21 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 22 C -0.13 -0.08 9.67 22.27 0.22 0.13 16 23 C -0.10 0.23 5.01 30.58 0.15 0.39 16 24 C -0.12 0.29 5.20 30.58 0.16 0.45 16 25 H 0.07 -0.42 8.14 -2.38 -0.02 -0.43 16 26 H 0.10 -0.89 6.43 -2.39 -0.02 -0.91 16 27 H 0.07 -0.35 7.04 -2.39 -0.02 -0.37 16 28 H 0.19 -0.16 5.85 -2.91 -0.02 -0.17 16 29 H 0.12 -0.05 7.96 -2.39 -0.02 -0.07 16 30 H 0.39 -0.53 8.70 -74.05 -0.64 -1.18 16 31 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 32 H -0.29 -1.55 7.11 99.48 0.71 -0.85 16 33 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.08 -0.47 6.66 -2.39 -0.02 -0.48 16 35 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.06 -0.06 7.40 -2.39 -0.02 -0.08 16 37 H 0.13 -0.03 7.10 -2.91 -0.02 -0.05 16 38 H 0.13 -0.14 8.06 -2.91 -0.02 -0.17 16 39 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 40 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.13 -0.38 7.95 -2.91 -0.02 -0.41 16 42 H 0.07 -0.12 8.14 -2.39 -0.02 -0.13 16 43 H 0.06 -0.04 7.37 -2.39 -0.02 -0.06 16 44 H 0.08 -0.39 7.67 -2.39 -0.02 -0.40 16 45 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -13.64 366.64 0.87 -12.77 By element: Atomic # 1 Polarization: -6.99 SS G_CDS: 0.38 Total: -6.60 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.50 Total: 6.15 kcal Atomic # 7 Polarization: -4.33 SS G_CDS: -3.97 Total: -8.29 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: -1.92 Total: -4.04 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.09 Total: 0.87 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.22 Total: -0.85 kcal Total: -13.64 0.87 -12.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_15704118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.936 kcal (2) G-P(sol) polarization free energy of solvation -13.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds