Wall clock time and date at job start Mon Mar 8 2021 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33322 * 125.94897 * 2 1 4 4 C 1.50706 * 122.71409 * 0.02562 * 3 2 1 5 5 O 1.42908 * 109.46711 * 330.00441 * 4 3 2 6 6 Si 1.86295 * 109.47100 * 210.00434 * 4 3 2 7 7 N 1.32115 * 114.57844 * 179.97438 * 3 2 1 8 8 C 1.29690 * 116.86817 * 359.97438 * 7 3 2 9 9 N 1.38609 * 124.95106 * 179.97438 * 8 7 3 10 10 C 1.46497 * 120.00169 * 359.97438 * 9 8 7 11 11 C 1.46500 * 119.99863 * 180.02562 * 9 8 7 12 12 H 1.09002 * 109.47092 * 359.97438 * 11 9 8 13 13 C 1.52997 * 109.47007 * 119.99753 * 11 9 8 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 17 17 C 1.50699 * 109.47155 * 179.97438 * 15 14 13 18 18 C 1.38243 * 119.99927 * 299.72828 * 17 15 14 19 19 C 1.38234 * 119.99927 * 179.79010 * 18 17 15 20 20 C 1.38241 * 120.00112 * 0.45951 * 19 18 17 21 21 C 1.38240 * 119.99620 * 359.76540 * 20 19 18 22 22 C 1.38230 * 120.00405 * 0.02881 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 24 24 C 1.53000 * 109.47023 * 239.99546 * 11 9 8 25 25 S 1.70969 * 110.09680 * 0.24301 * 8 7 3 26 26 H 1.09003 * 109.47207 * 90.00627 * 1 2 3 27 27 H 1.09001 * 109.47292 * 210.00485 * 1 2 3 28 28 H 1.08995 * 109.47417 * 330.00632 * 1 2 3 29 29 H 1.08999 * 109.47114 * 90.00187 * 4 3 2 30 30 H 0.96701 * 113.99513 * 299.99724 * 5 4 3 31 31 H 1.48504 * 110.00174 * 58.68084 * 6 4 3 32 32 H 1.48509 * 109.99945 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.47466 * 270.00474 * 10 9 8 34 34 H 1.09002 * 109.47260 * 30.00514 * 10 9 8 35 35 H 1.09000 * 109.47562 * 149.99963 * 10 9 8 36 36 H 1.08996 * 109.47853 * 300.00060 * 13 11 9 37 37 H 1.09002 * 109.47153 * 60.00089 * 13 11 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 40 40 H 1.07994 * 120.00023 * 359.97438 * 18 17 15 41 41 H 1.08003 * 120.00397 * 180.24862 * 19 18 17 42 42 H 1.07998 * 120.00255 * 179.79817 * 20 19 18 43 43 H 1.08003 * 119.99879 * 180.02562 * 21 20 19 44 44 H 1.08003 * 120.00568 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.47194 * 179.97438 * 23 15 14 46 46 H 1.09002 * 109.46695 * 59.99734 * 23 15 14 47 47 H 1.08992 * 109.47399 * 300.00063 * 24 11 9 48 48 H 1.09004 * 109.46724 * 60.00549 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4831 0.0006 5 8 0.4809 2.5023 -0.6726 6 14 2.9319 3.6151 -0.8779 7 7 3.5849 0.8188 0.0005 8 6 3.9315 -0.4309 0.0015 9 7 5.2384 -0.8925 0.0017 10 6 6.3517 0.0597 0.0002 11 6 5.5065 -2.3328 0.0023 12 1 4.5627 -2.8781 0.0029 13 6 6.3089 -2.7027 -1.2469 14 6 6.5895 -4.2067 -1.2460 15 6 7.3921 -4.5751 0.0034 16 1 8.3358 -4.0295 0.0030 17 6 7.6680 -6.0566 0.0046 18 6 6.6175 -6.9553 0.0112 19 6 6.8705 -8.3142 0.0078 20 6 8.1740 -8.7747 0.0075 21 6 9.2244 -7.8760 0.0056 22 6 8.9714 -6.5171 0.0046 23 6 6.5898 -4.2052 1.2525 24 6 6.3090 -2.7017 1.2516 25 16 2.5412 -1.4260 -0.0050 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6096 2.8212 1.0284 30 1 0.5228 2.2126 -1.5942 31 1 3.1447 3.1464 -2.2708 32 1 2.4023 5.0026 -0.8847 33 1 6.6274 0.2948 -1.0278 34 1 6.0494 0.9729 0.5130 35 1 7.2065 -0.3797 0.5143 36 1 5.7373 -2.4399 -2.1370 37 1 7.2527 -2.1574 -1.2471 38 1 7.1615 -4.4702 -2.1357 39 1 5.6458 -4.7523 -1.2455 40 1 5.5992 -6.5956 0.0159 41 1 6.0498 -9.0164 0.0089 42 1 8.3716 -9.8364 0.0082 43 1 10.2428 -8.2357 0.0049 44 1 9.7921 -5.8149 0.0036 45 1 7.1614 -4.4681 2.1425 46 1 5.6461 -4.7508 1.2529 47 1 7.2528 -2.1564 1.2513 48 1 5.7374 -2.4382 2.1415 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15753750_15704122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:01 Heat of formation + Delta-G solvation = 36.149959 kcal Electronic energy + Delta-G solvation = -27843.331911 eV Core-core repulsion = 24183.824309 eV Total energy + Delta-G solvation = -3659.507602 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.150 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29211 -40.82903 -39.57474 -37.87752 -36.62249 -33.37422 -32.38742 -31.97731 -31.82142 -29.69074 -29.37410 -27.78222 -25.60169 -24.63286 -23.85416 -23.66671 -22.97703 -21.65899 -20.67915 -20.01375 -19.20461 -18.01412 -17.89203 -17.27812 -16.75575 -16.63427 -16.23001 -15.85884 -15.79974 -15.58973 -15.36419 -15.10007 -14.72908 -14.63136 -14.22235 -14.11688 -14.07127 -14.03508 -13.67138 -13.62540 -13.41832 -13.31717 -13.13178 -13.08922 -12.85059 -12.60036 -12.48285 -12.30561 -12.23551 -11.95714 -11.74719 -11.65180 -11.54585 -11.29664 -10.80910 -10.50503 -10.32574 -9.95474 -9.83658 -9.61250 -8.42769 -4.65438 0.08069 0.20775 0.42716 0.48400 0.84448 1.42243 1.73212 1.85372 2.00164 2.15378 2.84812 3.26765 3.38132 3.49966 3.57697 3.59238 3.76333 4.02858 4.06171 4.08273 4.11010 4.13671 4.22031 4.23441 4.29114 4.30098 4.36185 4.40783 4.52296 4.54037 4.59398 4.61002 4.63486 4.73205 4.75262 4.79268 4.91249 4.92123 4.93813 4.97582 4.99176 5.11920 5.12862 5.17125 5.19180 5.24529 5.34093 5.56084 5.62329 5.69510 5.72907 6.04814 6.08534 6.38898 7.00139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.244 4.244 3 C 0.070 3.930 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.538 5.538 8 C 0.324 3.676 9 N -0.578 5.578 10 C 0.098 3.902 11 C 0.155 3.845 12 H 0.085 0.915 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.049 4.049 16 H 0.081 0.919 17 C -0.078 4.078 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.129 4.129 25 S 0.088 5.912 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.375 0.625 31 H -0.268 1.268 32 H -0.261 1.261 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -2.847 0.604 4.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.366 4.366 3 C -0.061 4.061 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.621 3.379 7 N -0.265 5.265 8 C -0.045 4.045 9 N -0.297 5.297 10 C -0.047 4.047 11 C 0.052 3.948 12 H 0.103 0.897 13 C -0.167 4.167 14 C -0.146 4.146 15 C -0.067 4.067 16 H 0.099 0.901 17 C -0.078 4.078 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.168 4.168 25 S 0.339 5.661 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.223 0.777 31 H -0.193 1.193 32 H -0.187 1.187 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.399 -2.823 0.502 4.447 hybrid contribution -0.948 0.038 -0.657 1.154 sum 2.451 -2.786 -0.155 3.713 Atomic orbital electron populations 1.20193 0.86592 1.03153 1.02487 1.25109 1.01224 0.92839 1.17467 1.20085 0.86924 0.97020 1.02035 1.24455 0.91901 0.95462 1.03606 1.86605 1.28550 1.89122 1.28872 0.93679 0.86195 0.76346 0.81653 1.65711 1.16793 1.16364 1.27627 1.23303 0.91182 0.91496 0.98554 1.46019 1.00120 1.05745 1.77815 1.21688 0.87944 0.93123 1.01902 1.21236 0.99405 0.78237 0.95965 0.89672 1.21935 1.00853 0.96651 0.97279 1.21580 1.00518 0.94736 0.97748 1.20223 0.99669 0.91621 0.95214 0.90091 1.19818 0.93254 0.95002 0.99689 1.21003 0.98793 0.93019 1.00506 1.21188 0.96927 0.95653 0.99848 1.21201 0.92893 0.99807 1.00314 1.21185 0.99239 0.93340 0.99842 1.21091 0.96123 0.95695 1.00616 1.21569 1.00540 0.94723 0.97745 1.21941 1.00882 0.96673 0.97307 1.83944 0.96718 1.10833 1.74622 0.91421 0.92219 0.89048 0.85873 0.77674 1.19271 1.18694 0.92850 0.89938 0.91038 0.91121 0.90830 0.90957 0.91367 0.86169 0.86061 0.86115 0.86049 0.86137 0.90918 0.91356 0.90784 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.05 8.95 36.01 0.32 0.28 16 2 C -0.24 -0.55 6.50 -36.02 -0.23 -0.78 16 3 C 0.07 0.18 5.92 -84.18 -0.50 -0.31 16 4 C -0.04 -0.06 2.83 36.01 0.10 0.04 16 5 O -0.53 -0.75 9.90 -35.23 -0.35 -1.10 16 6 Si 0.72 1.06 32.08 -169.99 -5.45 -4.39 16 7 N -0.54 -1.60 8.16 -11.36 -0.09 -1.69 16 8 C 0.32 0.67 7.74 -87.68 -0.68 -0.01 16 9 N -0.58 0.00 2.87 -176.27 -0.51 -0.50 16 10 C 0.10 -0.13 9.61 59.85 0.58 0.45 16 11 C 0.16 -0.24 2.55 -67.93 -0.17 -0.41 16 12 H 0.09 -0.09 6.34 -51.93 -0.33 -0.42 16 13 C -0.13 0.27 5.20 -26.73 -0.14 0.13 16 14 C -0.11 0.24 5.02 -26.73 -0.13 0.10 16 15 C -0.05 0.10 2.36 -91.77 -0.22 -0.12 16 16 H 0.08 -0.19 7.88 -51.93 -0.41 -0.60 16 17 C -0.08 0.03 4.78 -104.62 -0.50 -0.47 16 18 C -0.12 0.02 8.71 -39.58 -0.34 -0.32 16 19 C -0.12 -0.02 10.05 -39.58 -0.40 -0.41 16 20 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 21 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 22 C -0.12 0.01 9.67 -39.58 -0.38 -0.38 16 23 C -0.11 0.25 5.01 -26.76 -0.13 0.11 16 24 C -0.13 0.29 5.18 -26.75 -0.14 0.16 16 25 S 0.09 0.13 21.38 -107.50 -2.30 -2.17 16 26 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.09 0.11 6.61 -51.93 -0.34 -0.24 16 29 H 0.12 0.09 7.96 -51.93 -0.41 -0.32 16 30 H 0.38 -0.31 8.68 45.56 0.40 0.09 16 31 H -0.27 -1.15 7.11 56.52 0.40 -0.75 16 32 H -0.26 -0.98 7.11 56.52 0.40 -0.58 16 33 H 0.05 -0.07 8.14 -51.93 -0.42 -0.50 16 34 H 0.08 -0.05 7.62 -51.93 -0.40 -0.44 16 35 H 0.07 -0.21 6.43 -51.93 -0.33 -0.55 16 36 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 37 H 0.07 -0.18 7.67 -51.93 -0.40 -0.57 16 38 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 39 H 0.07 -0.14 7.40 -51.93 -0.38 -0.52 16 40 H 0.12 -0.18 7.10 -52.49 -0.37 -0.55 16 41 H 0.12 -0.16 8.06 -52.48 -0.42 -0.59 16 42 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 43 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 44 H 0.12 -0.18 7.95 -52.48 -0.42 -0.60 16 45 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 46 H 0.07 -0.15 7.37 -51.93 -0.38 -0.53 16 47 H 0.07 -0.20 6.66 -51.93 -0.35 -0.54 16 48 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 LS Contribution 385.63 15.07 5.81 5.81 Total: 0.00 -4.95 385.63 -14.21 -19.16 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: -7.56 Total: -12.32 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.77 Total: -2.80 kcal Atomic # 7 Polarization: -1.59 SS G_CDS: -0.60 Total: -2.19 kcal Atomic # 8 Polarization: -0.75 SS G_CDS: -0.35 Total: -1.10 kcal Atomic # 14 Polarization: 1.06 SS G_CDS: -5.45 Total: -4.39 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.30 Total: -2.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -4.95 -14.21 -19.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_15704122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.314 kcal (2) G-P(sol) polarization free energy of solvation -4.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds