Wall clock time and date at job start Mon Mar 8 2021 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33322 * 125.94897 * 2 1 4 4 C 1.50706 * 122.71409 * 0.02562 * 3 2 1 5 5 O 1.42908 * 109.46711 * 330.00441 * 4 3 2 6 6 Si 1.86295 * 109.47100 * 210.00434 * 4 3 2 7 7 N 1.32115 * 114.57844 * 179.97438 * 3 2 1 8 8 C 1.29690 * 116.86817 * 359.97438 * 7 3 2 9 9 N 1.38609 * 124.95106 * 179.97438 * 8 7 3 10 10 C 1.46497 * 120.00169 * 359.97438 * 9 8 7 11 11 C 1.46500 * 119.99863 * 180.02562 * 9 8 7 12 12 H 1.09002 * 109.47092 * 359.97438 * 11 9 8 13 13 C 1.52997 * 109.47007 * 119.99753 * 11 9 8 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 17 17 C 1.50699 * 109.47155 * 179.97438 * 15 14 13 18 18 C 1.38243 * 119.99927 * 299.72828 * 17 15 14 19 19 C 1.38234 * 119.99927 * 179.79010 * 18 17 15 20 20 C 1.38241 * 120.00112 * 0.45951 * 19 18 17 21 21 C 1.38240 * 119.99620 * 359.76540 * 20 19 18 22 22 C 1.38230 * 120.00405 * 0.02881 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 24 24 C 1.53000 * 109.47023 * 239.99546 * 11 9 8 25 25 S 1.70969 * 110.09680 * 0.24301 * 8 7 3 26 26 H 1.09003 * 109.47207 * 90.00627 * 1 2 3 27 27 H 1.09001 * 109.47292 * 210.00485 * 1 2 3 28 28 H 1.08995 * 109.47417 * 330.00632 * 1 2 3 29 29 H 1.08999 * 109.47114 * 90.00187 * 4 3 2 30 30 H 0.96701 * 113.99513 * 299.99724 * 5 4 3 31 31 H 1.48504 * 110.00174 * 58.68084 * 6 4 3 32 32 H 1.48509 * 109.99945 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.47466 * 270.00474 * 10 9 8 34 34 H 1.09002 * 109.47260 * 30.00514 * 10 9 8 35 35 H 1.09000 * 109.47562 * 149.99963 * 10 9 8 36 36 H 1.08996 * 109.47853 * 300.00060 * 13 11 9 37 37 H 1.09002 * 109.47153 * 60.00089 * 13 11 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 40 40 H 1.07994 * 120.00023 * 359.97438 * 18 17 15 41 41 H 1.08003 * 120.00397 * 180.24862 * 19 18 17 42 42 H 1.07998 * 120.00255 * 179.79817 * 20 19 18 43 43 H 1.08003 * 119.99879 * 180.02562 * 21 20 19 44 44 H 1.08003 * 120.00568 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.47194 * 179.97438 * 23 15 14 46 46 H 1.09002 * 109.46695 * 59.99734 * 23 15 14 47 47 H 1.08992 * 109.47399 * 300.00063 * 24 11 9 48 48 H 1.09004 * 109.46724 * 60.00549 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4831 0.0006 5 8 0.4809 2.5023 -0.6726 6 14 2.9319 3.6151 -0.8779 7 7 3.5849 0.8188 0.0005 8 6 3.9315 -0.4309 0.0015 9 7 5.2384 -0.8925 0.0017 10 6 6.3517 0.0597 0.0002 11 6 5.5065 -2.3328 0.0023 12 1 4.5627 -2.8781 0.0029 13 6 6.3089 -2.7027 -1.2469 14 6 6.5895 -4.2067 -1.2460 15 6 7.3921 -4.5751 0.0034 16 1 8.3358 -4.0295 0.0030 17 6 7.6680 -6.0566 0.0046 18 6 6.6175 -6.9553 0.0112 19 6 6.8705 -8.3142 0.0078 20 6 8.1740 -8.7747 0.0075 21 6 9.2244 -7.8760 0.0056 22 6 8.9714 -6.5171 0.0046 23 6 6.5898 -4.2052 1.2525 24 6 6.3090 -2.7017 1.2516 25 16 2.5412 -1.4260 -0.0050 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6096 2.8212 1.0284 30 1 0.5228 2.2126 -1.5942 31 1 3.1447 3.1464 -2.2708 32 1 2.4023 5.0026 -0.8847 33 1 6.6274 0.2948 -1.0278 34 1 6.0494 0.9729 0.5130 35 1 7.2065 -0.3797 0.5143 36 1 5.7373 -2.4399 -2.1370 37 1 7.2527 -2.1574 -1.2471 38 1 7.1615 -4.4702 -2.1357 39 1 5.6458 -4.7523 -1.2455 40 1 5.5992 -6.5956 0.0159 41 1 6.0498 -9.0164 0.0089 42 1 8.3716 -9.8364 0.0082 43 1 10.2428 -8.2357 0.0049 44 1 9.7921 -5.8149 0.0036 45 1 7.1614 -4.4681 2.1425 46 1 5.6461 -4.7508 1.2529 47 1 7.2528 -2.1564 1.2513 48 1 5.7374 -2.4382 2.1415 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15753750_15704122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:00 Heat of formation + Delta-G solvation = 47.070600 kcal Electronic energy + Delta-G solvation = -27842.858356 eV Core-core repulsion = 24183.824309 eV Total energy + Delta-G solvation = -3659.034047 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.150 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.28845 -40.82561 -39.52155 -37.93529 -36.60319 -33.36961 -32.38486 -31.82121 -31.75910 -29.71892 -29.31360 -27.76926 -25.68007 -24.60404 -23.69662 -23.62002 -22.96576 -21.58329 -20.58992 -20.04464 -19.25592 -18.10851 -17.81636 -17.31757 -16.77378 -16.62369 -16.14858 -15.85222 -15.78390 -15.71148 -15.21337 -15.01008 -14.65405 -14.62399 -14.30575 -14.13764 -13.99711 -13.96754 -13.72831 -13.63046 -13.39264 -13.28633 -13.03184 -12.98876 -12.89381 -12.55460 -12.50665 -12.28301 -12.13550 -12.00979 -11.79901 -11.53163 -11.44587 -11.16667 -10.85553 -10.63008 -10.40518 -10.05988 -9.79571 -9.55598 -8.47382 -4.80412 -0.03279 0.12470 0.47503 0.52421 0.73580 1.28809 1.66082 1.74249 1.83202 1.99213 2.89569 3.22357 3.40524 3.55661 3.66822 3.72751 3.87910 4.12297 4.13805 4.16408 4.20913 4.24164 4.27459 4.31242 4.34752 4.44361 4.45534 4.51716 4.52510 4.62199 4.64744 4.70497 4.74506 4.77259 4.81595 4.84831 4.92729 5.04926 5.08701 5.10364 5.12277 5.15165 5.20296 5.23365 5.28683 5.34877 5.39511 5.61482 5.66771 5.76650 5.78285 6.02668 6.15443 6.38136 6.89881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.258 4.258 3 C 0.059 3.941 4 C -0.041 4.041 5 O -0.532 6.532 6 Si 0.782 3.218 7 N -0.555 5.555 8 C 0.314 3.686 9 N -0.576 5.576 10 C 0.095 3.905 11 C 0.155 3.845 12 H 0.080 0.920 13 C -0.121 4.121 14 C -0.103 4.103 15 C -0.042 4.042 16 H 0.088 0.912 17 C -0.082 4.082 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.103 4.103 24 C -0.122 4.122 25 S 0.097 5.903 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.384 0.616 31 H -0.306 1.306 32 H -0.292 1.292 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -3.134 0.920 4.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.381 4.381 3 C -0.072 4.072 4 C -0.153 4.153 5 O -0.339 6.339 6 Si 0.688 3.312 7 N -0.282 5.282 8 C -0.056 4.056 9 N -0.294 5.294 10 C -0.049 4.049 11 C 0.052 3.948 12 H 0.098 0.902 13 C -0.160 4.160 14 C -0.141 4.141 15 C -0.061 4.061 16 H 0.106 0.894 17 C -0.082 4.082 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.160 4.160 25 S 0.348 5.652 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.150 0.850 30 H 0.233 0.767 31 H -0.234 1.234 32 H -0.219 1.219 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.875 -3.128 0.829 5.049 hybrid contribution -1.073 0.093 -0.802 1.343 sum 2.803 -3.035 0.027 4.131 Atomic orbital electron populations 1.20185 0.85754 1.03117 1.02970 1.25353 1.01997 0.93131 1.17588 1.20247 0.87070 0.97504 1.02337 1.24486 0.91756 0.95008 1.04077 1.86583 1.28527 1.89136 1.29675 0.92918 0.85316 0.73789 0.79166 1.65719 1.17007 1.16916 1.28600 1.23571 0.92098 0.91533 0.98382 1.46246 0.99707 1.06506 1.76965 1.21789 0.88057 0.92877 1.02182 1.21315 0.99435 0.77422 0.96644 0.90169 1.21860 1.00889 0.96718 0.96505 1.21523 1.00392 0.94572 0.97597 1.20186 0.99985 0.90700 0.95205 0.89415 1.20007 0.93136 0.95796 0.99227 1.21206 0.99471 0.93089 1.00500 1.21427 0.97338 0.96203 0.99971 1.21429 0.93133 1.00515 1.00630 1.21427 0.99870 0.93666 0.99921 1.21338 0.96762 0.95963 1.00635 1.21515 1.00402 0.94629 0.97547 1.21867 1.00976 0.96690 0.96483 1.83837 0.96348 1.10383 1.74594 0.90649 0.91776 0.89492 0.85040 0.76660 1.23379 1.21942 0.92717 0.90682 0.89047 0.92007 0.90079 0.91234 0.91506 0.85216 0.85080 0.85197 0.85001 0.84922 0.91070 0.91502 0.89889 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.95 71.24 0.64 0.55 16 2 C -0.26 -1.20 6.50 24.57 0.16 -1.04 16 3 C 0.06 0.33 5.92 41.41 0.24 0.57 16 4 C -0.04 -0.13 2.83 71.24 0.20 0.07 16 5 O -0.53 -1.61 9.90 -148.98 -1.47 -3.08 16 6 Si 0.78 2.95 32.08 68.60 2.20 5.15 16 7 N -0.55 -3.47 8.16 -189.86 -1.55 -5.02 16 8 C 0.31 1.33 7.74 179.32 1.39 2.72 16 9 N -0.58 0.17 2.87 -711.59 -2.04 -1.87 16 10 C 0.09 -0.30 9.61 127.77 1.23 0.92 16 11 C 0.15 -0.56 2.55 44.99 0.11 -0.44 16 12 H 0.08 -0.19 6.34 -2.39 -0.02 -0.21 16 13 C -0.12 0.58 5.20 30.59 0.16 0.74 16 14 C -0.10 0.50 5.02 30.60 0.15 0.66 16 15 C -0.04 0.21 2.36 -11.54 -0.03 0.18 16 16 H 0.09 -0.52 7.88 -2.39 -0.02 -0.54 16 17 C -0.08 0.09 4.78 -19.86 -0.09 0.00 16 18 C -0.12 0.05 8.71 22.27 0.19 0.24 16 19 C -0.13 -0.07 10.05 22.27 0.22 0.16 16 20 C -0.14 -0.11 10.05 22.27 0.22 0.11 16 21 C -0.13 -0.06 10.05 22.27 0.22 0.16 16 22 C -0.13 0.04 9.67 22.27 0.22 0.26 16 23 C -0.10 0.54 5.01 30.58 0.15 0.69 16 24 C -0.12 0.66 5.18 30.58 0.16 0.82 16 25 S 0.10 0.30 21.38 -56.49 -1.21 -0.91 16 26 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.09 0.21 6.61 -2.39 -0.02 0.19 16 29 H 0.13 0.18 7.96 -2.39 -0.02 0.16 16 30 H 0.38 -0.51 8.68 -74.06 -0.64 -1.15 16 31 H -0.31 -3.12 7.11 99.48 0.71 -2.41 16 32 H -0.29 -2.52 7.11 99.48 0.71 -1.81 16 33 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.07 -0.09 7.62 -2.39 -0.02 -0.11 16 35 H 0.09 -0.67 6.43 -2.39 -0.02 -0.69 16 36 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.08 -0.49 7.67 -2.39 -0.02 -0.51 16 38 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.07 -0.29 7.40 -2.39 -0.02 -0.31 16 40 H 0.13 -0.41 7.10 -2.91 -0.02 -0.43 16 41 H 0.13 -0.32 8.06 -2.91 -0.02 -0.35 16 42 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 43 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 44 H 0.13 -0.48 7.95 -2.91 -0.02 -0.50 16 45 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.07 -0.31 7.37 -2.39 -0.02 -0.33 16 47 H 0.08 -0.58 6.66 -2.39 -0.02 -0.59 16 48 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -11.72 385.63 1.84 -9.88 By element: Atomic # 1 Polarization: -11.88 SS G_CDS: 0.35 Total: -11.53 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 5.56 Total: 7.38 kcal Atomic # 7 Polarization: -3.30 SS G_CDS: -3.59 Total: -6.89 kcal Atomic # 8 Polarization: -1.61 SS G_CDS: -1.47 Total: -3.08 kcal Atomic # 14 Polarization: 2.95 SS G_CDS: 2.20 Total: 5.15 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.21 Total: -0.91 kcal Total: -11.72 1.84 -9.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_15704122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.950 kcal (2) G-P(sol) polarization free energy of solvation -11.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds