Wall clock time and date at job start Mon Mar 8 2021 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.39145 * 111.00001 * 2 1 4 4 N 1.32332 * 119.71958 * 123.95828 * 3 2 1 5 5 C 1.32009 * 121.64970 * 179.97438 * 4 3 2 6 6 C 1.37984 * 120.90011 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.32749 * 180.02562 * 6 5 4 8 8 O 1.42893 * 109.47529 * 119.99985 * 7 6 5 9 9 Si 1.86299 * 109.47102 * 359.97438 * 7 6 5 10 10 C 1.38905 * 119.34865 * 0.02562 * 6 5 4 11 11 C 1.38450 * 118.47912 * 359.74989 * 10 6 5 12 12 F 1.35104 * 120.46651 * 180.26685 * 11 10 6 13 13 C 1.46898 * 111.00392 * 123.95649 * 2 1 3 14 14 H 1.09001 * 109.47062 * 186.04539 * 13 2 1 15 15 C 1.53006 * 109.47006 * 306.04285 * 13 2 1 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 13 2 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 13 18 18 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 19 19 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 20 20 C 1.38233 * 119.99966 * 299.72856 * 19 17 16 21 21 C 1.38235 * 119.99721 * 179.81268 * 20 19 17 22 22 C 1.38239 * 120.00103 * 0.38825 * 21 20 19 23 23 C 1.38231 * 120.00065 * 359.86413 * 22 21 20 24 24 C 1.38232 * 119.99859 * 359.94873 * 23 22 21 25 25 C 1.52996 * 109.47328 * 60.00126 * 17 16 15 26 26 C 1.52997 * 109.47123 * 66.04266 * 13 2 1 27 27 H 1.09001 * 109.46766 * 296.04413 * 1 2 3 28 28 H 1.09001 * 109.47115 * 56.04193 * 1 2 3 29 29 H 1.08997 * 109.47328 * 176.05001 * 1 2 3 30 30 H 1.08001 * 119.55250 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47091 * 240.00169 * 7 6 5 32 32 H 0.96700 * 114.00238 * 180.02562 * 8 7 6 33 33 H 1.48496 * 110.00466 * 298.68373 * 9 7 6 34 34 H 1.48498 * 109.99858 * 60.00325 * 9 7 6 35 35 H 1.07992 * 120.76077 * 179.97438 * 10 6 5 36 36 H 1.08998 * 109.46505 * 59.99663 * 15 13 2 37 37 H 1.08996 * 109.46884 * 300.00544 * 15 13 2 38 38 H 1.09002 * 109.47153 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46832 * 60.00321 * 16 15 13 40 40 H 1.08000 * 120.00151 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.99986 * 180.23001 * 21 20 19 42 42 H 1.08000 * 120.00137 * 179.83471 * 22 21 20 43 43 H 1.07991 * 120.00070 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99951 * 179.97438 * 24 23 22 45 45 H 1.08992 * 109.47554 * 59.99639 * 25 17 16 46 46 H 1.09004 * 109.47108 * 179.97438 * 25 17 16 47 47 H 1.09002 * 109.47045 * 60.00157 * 26 13 2 48 48 H 1.09001 * 109.47375 * 300.00082 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9676 1.2990 0.0000 4 7 2.8020 1.6814 0.9532 5 6 3.2984 2.9041 0.9898 6 6 2.9627 3.8343 0.0275 7 6 3.5375 5.2263 0.0815 8 8 4.2824 5.4807 -1.1111 9 14 4.6607 5.3775 1.5601 10 6 2.0898 3.4750 -0.9914 11 6 1.5886 2.1844 -1.0070 12 9 0.7410 1.7905 -1.9825 13 6 1.9955 -0.7660 1.1375 14 1 3.0798 -0.6611 1.1755 15 6 1.3859 -0.2344 2.4363 16 6 1.9338 -1.0326 3.6210 17 6 1.5693 -2.5090 3.4534 18 1 0.4850 -2.6136 3.4152 19 6 2.1096 -3.2953 4.6200 20 6 3.4693 -3.3179 4.8680 21 6 3.9644 -4.0360 5.9404 22 6 3.1005 -4.7381 6.7601 23 6 1.7414 -4.7198 6.5090 24 6 1.2459 -3.9986 5.4389 25 6 2.1790 -3.0406 2.1547 26 6 1.6315 -2.2426 0.9703 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0708 30 1 3.9772 3.1799 1.7833 31 1 2.7274 5.9508 0.1654 32 1 4.6822 6.3605 -1.1450 33 1 3.8907 5.1468 2.8087 34 1 5.7694 4.3949 1.4582 35 1 1.8112 4.1849 -1.7561 36 1 0.3016 -0.3392 2.3982 37 1 1.6452 0.8176 2.5553 38 1 1.4992 -0.6541 4.5462 39 1 3.0181 -0.9280 3.6591 40 1 4.1445 -2.7723 4.2255 41 1 5.0264 -4.0506 6.1364 42 1 3.4876 -5.3013 7.5963 43 1 1.0666 -5.2687 7.1490 44 1 0.1840 -3.9846 5.2424 45 1 3.2632 -2.9361 2.1928 46 1 1.9197 -4.0927 2.0355 47 1 2.0658 -2.6213 0.0450 48 1 0.5472 -2.3475 0.9323 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15753750_17656566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:05 Heat of formation + Delta-G solvation = 5.733686 kcal Electronic energy + Delta-G solvation = -30289.766216 eV Core-core repulsion = 26225.871063 eV Total energy + Delta-G solvation = -4063.895153 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.99605 -42.04015 -40.78732 -39.61537 -37.96799 -36.89368 -33.63480 -33.07308 -31.78274 -31.74995 -31.63648 -29.19270 -28.06517 -25.93578 -25.12213 -23.93672 -23.68209 -23.31160 -22.61490 -21.40002 -20.28195 -18.96425 -18.55827 -18.46987 -18.04276 -17.80877 -16.98157 -16.59125 -16.36430 -16.14419 -15.87937 -15.67695 -15.45404 -15.32106 -15.15475 -14.98065 -14.60408 -14.47657 -14.25906 -14.16816 -14.06536 -13.98366 -13.87037 -13.57380 -13.22958 -12.95804 -12.81056 -12.60839 -12.50577 -12.26639 -12.14850 -12.08898 -11.79096 -11.54498 -11.43932 -11.21431 -11.02034 -10.69646 -10.55183 -10.39927 -9.77177 -9.53024 -9.11922 -5.11026 -0.28510 -0.05814 0.50076 0.54831 1.12007 1.52264 1.83110 2.18975 2.39429 2.92123 3.03149 3.07858 3.20724 3.54515 3.62912 3.65262 3.73087 3.82597 3.90570 3.97139 4.13963 4.14453 4.17356 4.19305 4.26752 4.28017 4.31142 4.35493 4.43313 4.48165 4.53291 4.55303 4.56634 4.63979 4.68181 4.77247 4.81163 4.86164 4.94607 5.01074 5.11703 5.13210 5.16141 5.19373 5.25547 5.27217 5.38042 5.45586 5.60129 5.63840 5.68253 5.78890 5.97400 6.15375 6.47493 6.65672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.469 5.469 3 C 0.296 3.704 4 N -0.482 5.482 5 C 0.115 3.885 6 C -0.129 4.129 7 C -0.064 4.064 8 O -0.545 6.545 9 Si 0.684 3.316 10 C -0.057 4.057 11 C 0.035 3.965 12 F -0.120 7.120 13 C 0.094 3.906 14 H 0.097 0.903 15 C -0.146 4.146 16 C -0.101 4.101 17 C -0.049 4.049 18 H 0.077 0.923 19 C -0.075 4.075 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.107 4.107 26 C -0.114 4.114 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.386 0.614 33 H -0.250 1.250 34 H -0.246 1.246 35 H 0.154 0.846 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 4.233 1.572 4.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.184 5.184 3 C 0.063 3.937 4 N -0.195 5.195 5 C -0.042 4.042 6 C -0.133 4.133 7 C -0.176 4.176 8 O -0.352 6.352 9 Si 0.584 3.416 10 C -0.083 4.083 11 C 0.011 3.989 12 F -0.099 7.099 13 C -0.013 4.013 14 H 0.115 0.885 15 C -0.185 4.185 16 C -0.139 4.139 17 C -0.067 4.067 18 H 0.095 0.905 19 C -0.075 4.075 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.152 4.152 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.172 0.828 31 H 0.097 0.903 32 H 0.234 0.766 33 H -0.175 1.175 34 H -0.170 1.170 35 H 0.172 0.828 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.361 2.283 2.296 3.258 hybrid contribution -0.982 0.580 -0.484 1.239 sum -0.621 2.863 1.812 3.445 Atomic orbital electron populations 1.22805 0.83768 1.04647 1.02722 1.59355 1.09557 1.07144 1.42371 1.20032 0.94194 0.89599 0.89920 1.67801 1.11958 1.17674 1.22080 1.22272 0.96626 0.88030 0.97310 1.20122 0.99782 0.96338 0.97052 1.24528 1.00590 0.94134 0.98317 1.86488 1.70538 1.39085 1.39073 0.95010 0.81164 0.89864 0.75551 1.21386 0.94426 0.94301 0.98205 1.18093 0.97073 0.93938 0.89788 1.91483 1.67612 1.90899 1.59871 1.21736 1.00914 0.92241 0.86370 0.88475 1.22212 1.00140 1.01213 0.94899 1.21476 1.01475 0.93264 0.97694 1.20227 1.00166 0.94134 0.92183 0.90459 1.19861 0.93584 0.97614 0.96476 1.21013 0.94920 0.99554 0.97796 1.21182 0.99818 0.97344 0.95300 1.21182 0.93660 0.99729 0.99779 1.21168 0.95602 0.99227 0.97646 1.21088 0.99483 0.97663 0.95424 1.21549 1.00701 0.99418 0.92796 1.21639 1.01444 0.93232 0.98855 0.93433 0.89445 0.89221 0.82821 0.90272 0.76621 1.17493 1.17019 0.82793 0.91993 0.90248 0.91790 0.91446 0.86162 0.86102 0.86146 0.86093 0.86221 0.91464 0.91261 0.90799 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 8.46 60.06 0.51 0.51 16 2 N -0.47 -1.06 4.70 -173.35 -0.81 -1.88 16 3 C 0.30 0.97 6.04 -154.86 -0.94 0.03 16 4 N -0.48 -1.60 6.78 -12.37 -0.08 -1.69 16 5 C 0.11 0.27 9.84 -17.57 -0.17 0.10 16 6 C -0.13 -0.20 5.43 -104.47 -0.57 -0.76 16 7 C -0.06 0.08 2.83 36.01 0.10 0.18 16 8 O -0.55 0.50 12.76 -35.23 -0.45 0.05 16 9 Si 0.68 -1.52 29.82 -169.99 -5.07 -6.59 16 10 C -0.06 -0.10 9.75 -39.26 -0.38 -0.49 16 11 C 0.04 0.11 6.99 -39.09 -0.27 -0.17 16 12 F -0.12 -0.40 14.81 2.25 0.03 -0.36 16 13 C 0.09 0.12 1.83 -67.71 -0.12 0.00 16 14 H 0.10 0.27 7.52 -51.93 -0.39 -0.12 16 15 C -0.15 -0.12 4.36 -26.73 -0.12 -0.24 16 16 C -0.10 -0.05 5.02 -26.73 -0.13 -0.18 16 17 C -0.05 -0.01 2.36 -91.77 -0.22 -0.22 16 18 H 0.08 0.00 7.88 -51.93 -0.41 -0.41 16 19 C -0.08 -0.10 4.78 -104.62 -0.50 -0.60 16 20 C -0.11 -0.17 8.71 -39.58 -0.34 -0.51 16 21 C -0.12 -0.17 10.05 -39.58 -0.40 -0.57 16 22 C -0.13 -0.17 10.05 -39.58 -0.40 -0.57 16 23 C -0.12 -0.16 10.05 -39.59 -0.40 -0.56 16 24 C -0.12 -0.16 9.67 -39.58 -0.38 -0.55 16 25 C -0.11 0.01 5.01 -26.76 -0.13 -0.13 16 26 C -0.11 -0.01 5.12 -26.76 -0.14 -0.15 16 27 H 0.05 0.01 6.21 -51.93 -0.32 -0.31 16 28 H 0.09 0.08 5.63 -51.93 -0.29 -0.21 16 29 H 0.09 -0.06 6.47 -51.93 -0.34 -0.40 16 30 H 0.16 0.20 4.88 -52.49 -0.26 -0.06 16 31 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 32 H 0.39 -2.30 8.74 45.56 0.40 -1.90 16 33 H -0.25 0.00 7.11 56.52 0.40 0.40 16 34 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 35 H 0.15 0.04 8.06 -52.49 -0.42 -0.39 16 36 H 0.06 0.03 6.33 -51.93 -0.33 -0.30 16 37 H 0.08 0.18 6.12 -51.93 -0.32 -0.14 16 38 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.07 0.06 7.40 -51.93 -0.38 -0.32 16 40 H 0.12 0.05 7.10 -52.49 -0.37 -0.32 16 41 H 0.12 -0.02 8.06 -52.48 -0.42 -0.44 16 42 H 0.12 -0.03 8.06 -52.49 -0.42 -0.45 16 43 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 44 H 0.12 0.00 7.95 -52.49 -0.42 -0.42 16 45 H 0.07 0.02 7.37 -51.93 -0.38 -0.37 16 46 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 47 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.07 -0.03 6.55 -51.93 -0.34 -0.37 16 LS Contribution 370.20 15.07 5.58 5.58 Total: 0.00 -5.87 370.20 -12.53 -18.41 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: -6.72 Total: -8.65 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -5.01 Total: -4.86 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -0.90 Total: -3.56 kcal Atomic # 8 Polarization: 0.50 SS G_CDS: -0.45 Total: 0.05 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.03 Total: -0.36 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -5.07 Total: -6.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -5.87 -12.53 -18.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_17656566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.139 kcal (2) G-P(sol) polarization free energy of solvation -5.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds