Wall clock time and date at job start Mon Mar 8 2021 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.39145 * 111.00001 * 2 1 4 4 N 1.32332 * 119.71958 * 123.95828 * 3 2 1 5 5 C 1.32009 * 121.64970 * 179.97438 * 4 3 2 6 6 C 1.37984 * 120.90011 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.32749 * 180.02562 * 6 5 4 8 8 O 1.42893 * 109.47529 * 119.99985 * 7 6 5 9 9 Si 1.86299 * 109.47102 * 359.97438 * 7 6 5 10 10 C 1.38905 * 119.34865 * 0.02562 * 6 5 4 11 11 C 1.38450 * 118.47912 * 359.74989 * 10 6 5 12 12 F 1.35104 * 120.46651 * 180.26685 * 11 10 6 13 13 C 1.46898 * 111.00392 * 123.95649 * 2 1 3 14 14 H 1.09001 * 109.47062 * 186.04539 * 13 2 1 15 15 C 1.53006 * 109.47006 * 306.04285 * 13 2 1 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 13 2 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 13 18 18 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 19 19 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 20 20 C 1.38233 * 119.99966 * 299.72856 * 19 17 16 21 21 C 1.38235 * 119.99721 * 179.81268 * 20 19 17 22 22 C 1.38239 * 120.00103 * 0.38825 * 21 20 19 23 23 C 1.38231 * 120.00065 * 359.86413 * 22 21 20 24 24 C 1.38232 * 119.99859 * 359.94873 * 23 22 21 25 25 C 1.52996 * 109.47328 * 60.00126 * 17 16 15 26 26 C 1.52997 * 109.47123 * 66.04266 * 13 2 1 27 27 H 1.09001 * 109.46766 * 296.04413 * 1 2 3 28 28 H 1.09001 * 109.47115 * 56.04193 * 1 2 3 29 29 H 1.08997 * 109.47328 * 176.05001 * 1 2 3 30 30 H 1.08001 * 119.55250 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47091 * 240.00169 * 7 6 5 32 32 H 0.96700 * 114.00238 * 180.02562 * 8 7 6 33 33 H 1.48496 * 110.00466 * 298.68373 * 9 7 6 34 34 H 1.48498 * 109.99858 * 60.00325 * 9 7 6 35 35 H 1.07992 * 120.76077 * 179.97438 * 10 6 5 36 36 H 1.08998 * 109.46505 * 59.99663 * 15 13 2 37 37 H 1.08996 * 109.46884 * 300.00544 * 15 13 2 38 38 H 1.09002 * 109.47153 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46832 * 60.00321 * 16 15 13 40 40 H 1.08000 * 120.00151 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.99986 * 180.23001 * 21 20 19 42 42 H 1.08000 * 120.00137 * 179.83471 * 22 21 20 43 43 H 1.07991 * 120.00070 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99951 * 179.97438 * 24 23 22 45 45 H 1.08992 * 109.47554 * 59.99639 * 25 17 16 46 46 H 1.09004 * 109.47108 * 179.97438 * 25 17 16 47 47 H 1.09002 * 109.47045 * 60.00157 * 26 13 2 48 48 H 1.09001 * 109.47375 * 300.00082 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9676 1.2990 0.0000 4 7 2.8020 1.6814 0.9532 5 6 3.2984 2.9041 0.9898 6 6 2.9627 3.8343 0.0275 7 6 3.5375 5.2263 0.0815 8 8 4.2824 5.4807 -1.1111 9 14 4.6607 5.3775 1.5601 10 6 2.0898 3.4750 -0.9914 11 6 1.5886 2.1844 -1.0070 12 9 0.7410 1.7905 -1.9825 13 6 1.9955 -0.7660 1.1375 14 1 3.0798 -0.6611 1.1755 15 6 1.3859 -0.2344 2.4363 16 6 1.9338 -1.0326 3.6210 17 6 1.5693 -2.5090 3.4534 18 1 0.4850 -2.6136 3.4152 19 6 2.1096 -3.2953 4.6200 20 6 3.4693 -3.3179 4.8680 21 6 3.9644 -4.0360 5.9404 22 6 3.1005 -4.7381 6.7601 23 6 1.7414 -4.7198 6.5090 24 6 1.2459 -3.9986 5.4389 25 6 2.1790 -3.0406 2.1547 26 6 1.6315 -2.2426 0.9703 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0708 30 1 3.9772 3.1799 1.7833 31 1 2.7274 5.9508 0.1654 32 1 4.6822 6.3605 -1.1450 33 1 3.8907 5.1468 2.8087 34 1 5.7694 4.3949 1.4582 35 1 1.8112 4.1849 -1.7561 36 1 0.3016 -0.3392 2.3982 37 1 1.6452 0.8176 2.5553 38 1 1.4992 -0.6541 4.5462 39 1 3.0181 -0.9280 3.6591 40 1 4.1445 -2.7723 4.2255 41 1 5.0264 -4.0506 6.1364 42 1 3.4876 -5.3013 7.5963 43 1 1.0666 -5.2687 7.1490 44 1 0.1840 -3.9846 5.2424 45 1 3.2632 -2.9361 2.1928 46 1 1.9197 -4.0927 2.0355 47 1 2.0658 -2.6213 0.0450 48 1 0.5472 -2.3475 0.9323 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15753750_17656566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:04 Heat of formation + Delta-G solvation = 13.238500 kcal Electronic energy + Delta-G solvation = -30289.440783 eV Core-core repulsion = 26225.871063 eV Total energy + Delta-G solvation = -4063.569720 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.169 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.20388 -42.16845 -40.86004 -39.68567 -37.91188 -36.93414 -33.74150 -33.16848 -31.84861 -31.81638 -31.72078 -29.26253 -28.10692 -25.97770 -25.25637 -23.99702 -23.75289 -23.38310 -22.70928 -21.47560 -20.35250 -19.06991 -18.67173 -18.44445 -18.14069 -17.85862 -17.15731 -16.67798 -16.44664 -16.20707 -15.93088 -15.74095 -15.48985 -15.37719 -15.21349 -15.05857 -14.66959 -14.52973 -14.34980 -14.26223 -14.12185 -14.00416 -13.93513 -13.65645 -13.30073 -13.01556 -12.86033 -12.62793 -12.55861 -12.32743 -12.17576 -12.13406 -11.85110 -11.60072 -11.50669 -11.29086 -11.13138 -10.79838 -10.70805 -10.30190 -9.84813 -9.60378 -9.25488 -4.96905 -0.44196 -0.20115 0.42616 0.47139 1.25076 1.63964 1.94180 2.07435 2.25834 2.84628 2.88421 2.97643 3.21173 3.49828 3.55955 3.58078 3.67777 3.75044 3.86574 3.93513 4.10546 4.12136 4.15150 4.19713 4.22428 4.24993 4.25373 4.30218 4.34737 4.42614 4.47670 4.50125 4.51724 4.58752 4.62861 4.71558 4.74867 4.79134 4.88491 4.93346 5.04666 5.07864 5.10607 5.13680 5.17229 5.20844 5.30832 5.37610 5.51214 5.57050 5.61293 5.72360 5.83151 6.10261 6.49347 6.89058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.478 5.478 3 C 0.284 3.716 4 N -0.495 5.495 5 C 0.100 3.900 6 C -0.134 4.134 7 C -0.069 4.069 8 O -0.564 6.564 9 Si 0.773 3.227 10 C -0.057 4.057 11 C 0.022 3.978 12 F -0.124 7.124 13 C 0.099 3.901 14 H 0.078 0.922 15 C -0.137 4.137 16 C -0.095 4.095 17 C -0.041 4.041 18 H 0.084 0.916 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.129 4.129 24 C -0.130 4.130 25 C -0.101 4.101 26 C -0.107 4.107 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.106 0.894 32 H 0.407 0.593 33 H -0.281 1.281 34 H -0.295 1.295 35 H 0.171 0.829 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 4.837 1.482 5.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.193 5.193 3 C 0.050 3.950 4 N -0.209 5.209 5 C -0.057 4.057 6 C -0.137 4.137 7 C -0.179 4.179 8 O -0.374 6.374 9 Si 0.678 3.322 10 C -0.083 4.083 11 C -0.002 4.002 12 F -0.103 7.103 13 C -0.008 4.008 14 H 0.096 0.904 15 C -0.176 4.176 16 C -0.133 4.133 17 C -0.059 4.059 18 H 0.102 0.898 19 C -0.082 4.082 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.145 4.145 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.174 0.826 31 H 0.124 0.876 32 H 0.260 0.740 33 H -0.208 1.208 34 H -0.223 1.223 35 H 0.188 0.812 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.224 2.921 2.190 3.658 hybrid contribution -0.742 0.388 -0.438 0.945 sum -0.966 3.310 1.753 3.868 Atomic orbital electron populations 1.22846 0.82808 1.05491 1.02650 1.59420 1.10444 1.06848 1.42636 1.20197 0.94496 0.90132 0.90158 1.67788 1.12316 1.18287 1.22477 1.22494 0.96954 0.88244 0.98004 1.20468 0.99324 0.97621 0.96336 1.24655 1.01657 0.93001 0.98594 1.86435 1.70821 1.41176 1.38983 0.94089 0.77370 0.87734 0.73007 1.21615 0.94044 0.94096 0.98538 1.18259 0.97511 0.94575 0.89869 1.91465 1.67800 1.91034 1.60012 1.21656 0.99787 0.92906 0.86410 0.90400 1.22105 1.00424 1.00273 0.94770 1.21405 1.00928 0.93632 0.97364 1.20164 1.00457 0.93461 0.91861 0.89756 1.20001 0.93623 0.97764 0.96820 1.21172 0.95295 0.99860 0.98118 1.21422 1.00631 0.97399 0.95381 1.21440 0.93889 0.99915 1.00258 1.21436 0.95965 0.99331 0.97907 1.21329 1.00246 0.97673 0.95494 1.21495 1.00364 0.99465 0.92624 1.21583 1.02009 0.92220 0.98657 0.93176 0.89871 0.87817 0.82551 0.87607 0.74050 1.20818 1.22260 0.81175 0.91285 0.91755 0.92094 0.92211 0.85799 0.84987 0.84822 0.84667 0.84964 0.92009 0.90984 0.91255 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 8.46 127.69 1.08 1.09 16 2 N -0.48 -2.63 4.70 -702.34 -3.30 -5.93 16 3 C 0.28 2.22 6.04 133.09 0.80 3.03 16 4 N -0.50 -4.13 6.78 -193.04 -1.31 -5.44 16 5 C 0.10 0.61 9.84 84.61 0.83 1.44 16 6 C -0.13 -0.44 5.43 -19.77 -0.11 -0.55 16 7 C -0.07 0.24 2.83 71.24 0.20 0.44 16 8 O -0.56 1.69 12.76 -148.98 -1.90 -0.21 16 9 Si 0.77 -3.41 29.82 68.60 2.05 -1.36 16 10 C -0.06 -0.22 9.75 22.48 0.22 0.00 16 11 C 0.02 0.15 6.99 22.59 0.16 0.31 16 12 F -0.12 -0.91 14.81 44.97 0.67 -0.25 16 13 C 0.10 0.36 1.83 44.92 0.08 0.44 16 14 H 0.08 0.58 7.52 -2.39 -0.02 0.57 16 15 C -0.14 -0.35 4.36 30.60 0.13 -0.22 16 16 C -0.10 -0.18 5.02 30.59 0.15 -0.02 16 17 C -0.04 -0.02 2.36 -11.54 -0.03 -0.05 16 18 H 0.08 -0.06 7.88 -2.39 -0.02 -0.08 16 19 C -0.08 -0.24 4.78 -19.86 -0.09 -0.34 16 20 C -0.13 -0.46 8.71 22.27 0.19 -0.27 16 21 C -0.13 -0.43 10.05 22.27 0.22 -0.21 16 22 C -0.14 -0.39 10.05 22.27 0.22 -0.17 16 23 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 24 C -0.13 -0.35 9.67 22.27 0.22 -0.13 16 25 C -0.10 -0.02 5.01 30.58 0.15 0.13 16 26 C -0.11 -0.05 5.12 30.58 0.16 0.10 16 27 H 0.05 0.04 6.21 -2.39 -0.01 0.02 16 28 H 0.08 0.20 5.63 -2.39 -0.01 0.18 16 29 H 0.10 -0.19 6.47 -2.39 -0.02 -0.20 16 30 H 0.16 0.67 4.88 -2.91 -0.01 0.65 16 31 H 0.11 -0.89 7.96 -2.39 -0.02 -0.91 16 32 H 0.41 -5.54 8.74 -74.06 -0.65 -6.19 16 33 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 34 H -0.29 -1.08 7.11 99.48 0.71 -0.37 16 35 H 0.17 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.07 0.08 6.33 -2.39 -0.02 0.06 16 37 H 0.06 0.39 6.12 -2.39 -0.01 0.38 16 38 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.06 0.21 7.40 -2.39 -0.02 0.19 16 40 H 0.12 0.26 7.10 -2.91 -0.02 0.23 16 41 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 43 H 0.14 -0.15 8.06 -2.92 -0.02 -0.17 16 44 H 0.13 -0.08 7.95 -2.91 -0.02 -0.10 16 45 H 0.06 0.09 7.37 -2.39 -0.02 0.07 16 46 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 47 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.08 -0.11 6.55 -2.39 -0.02 -0.12 16 Total: 0.00 -14.86 370.20 1.40 -13.46 By element: Atomic # 1 Polarization: -5.57 SS G_CDS: 0.38 Total: -5.19 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.83 Total: 4.92 kcal Atomic # 7 Polarization: -6.76 SS G_CDS: -4.61 Total: -11.37 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: -1.90 Total: -0.21 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.67 Total: -0.25 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.05 Total: -1.36 kcal Total: -14.86 1.40 -13.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15753750_17656566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.699 kcal (2) G-P(sol) polarization free energy of solvation -14.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds