Wall clock time and date at job start Mon Mar 8 2021 08:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47466 * 2 1 4 4 C 1.53007 * 109.47074 * 239.99950 * 2 1 3 5 5 O 1.45198 * 109.47251 * 120.00457 * 2 1 3 6 6 C 1.34638 * 117.00127 * 59.99390 * 5 2 1 7 7 O 1.21515 * 120.00116 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00168 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00186 * 180.02562 * 8 6 5 10 10 H 1.08999 * 112.90525 * 336.24628 * 9 8 6 11 11 C 1.53778 * 113.61736 * 107.49948 * 9 8 6 12 12 C 1.53784 * 87.08081 * 89.11728 * 11 9 8 13 13 F 1.39898 * 113.61310 * 270.88745 * 12 11 9 14 14 C 1.52992 * 113.61673 * 139.98135 * 12 11 9 15 15 N 1.46503 * 109.47166 * 87.50094 * 14 12 11 16 16 C 1.39002 * 119.99844 * 180.02562 * 15 14 12 17 17 N 1.32403 * 119.70243 * 180.02562 * 16 15 14 18 18 C 1.31971 * 121.61889 * 180.02562 * 17 16 15 19 19 C 1.38020 * 120.85999 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.33400 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47337 * 119.99967 * 20 19 18 22 22 Si 1.86303 * 109.47515 * 359.97438 * 20 19 18 23 23 C 1.38881 * 119.32910 * 359.97438 * 19 18 17 24 24 C 1.38300 * 118.50737 * 359.73569 * 23 19 18 25 25 C 1.53778 * 113.61412 * 205.00214 * 9 8 6 26 26 H 1.08995 * 109.46809 * 300.00059 * 1 2 3 27 27 H 1.09005 * 109.47099 * 59.99692 * 1 2 3 28 28 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47001 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47320 * 299.99722 * 3 2 1 31 31 H 1.08995 * 109.47154 * 60.00153 * 3 2 1 32 32 H 1.09001 * 109.47351 * 300.00446 * 4 2 1 33 33 H 1.09005 * 109.46865 * 60.00215 * 4 2 1 34 34 H 1.08997 * 109.47257 * 180.02562 * 4 2 1 35 35 H 0.97004 * 119.99709 * 359.97438 * 8 6 5 36 36 H 1.08993 * 113.61229 * 334.57051 * 11 9 8 37 37 H 1.09000 * 113.61263 * 203.66701 * 11 9 8 38 38 H 1.08996 * 109.47544 * 207.50317 * 14 12 11 39 39 H 1.09007 * 109.47088 * 327.50753 * 14 12 11 40 40 H 0.97004 * 120.00029 * 0.02562 * 15 14 12 41 41 H 1.08008 * 119.56784 * 179.97438 * 18 17 16 42 42 H 1.09003 * 109.47288 * 239.99750 * 20 19 18 43 43 H 0.96703 * 113.99607 * 300.00075 * 21 20 19 44 44 H 1.48494 * 110.00024 * 180.02562 * 22 20 19 45 45 H 1.48505 * 109.99697 * 301.32008 * 22 20 19 46 46 H 1.07996 * 120.74790 * 179.97438 * 23 19 18 47 47 H 1.07995 * 120.45279 * 180.28476 * 24 23 19 48 48 H 1.08998 * 113.61879 * 156.33410 * 25 9 8 49 49 H 1.08999 * 113.61887 * 25.42517 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9514 -2.5097 0.5035 8 7 2.0672 -2.6656 2.4170 9 6 1.6739 -4.0670 2.5830 10 1 0.7605 -4.3180 2.0438 11 6 2.8225 -5.0615 2.3454 12 6 3.1492 -4.9205 3.8415 13 9 4.0424 -3.8817 4.1246 14 6 3.5389 -6.2400 4.5107 15 7 4.9800 -6.4566 4.3609 16 6 5.5701 -7.5979 4.8914 17 7 6.8732 -7.7875 4.7529 18 6 7.4723 -8.8573 5.2410 19 6 6.7555 -9.8235 5.9175 20 6 7.4519 -11.0402 6.4705 21 8 7.2724 -11.0891 7.8873 22 14 9.2706 -10.9473 6.0772 23 6 5.3862 -9.6625 6.0845 24 6 4.7871 -8.5283 5.5675 25 6 1.6740 -4.5376 4.0470 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4423 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6766 -0.2074 -2.1393 34 1 3.1300 -0.7217 -1.2491 35 1 2.6268 -2.2367 3.0832 36 1 3.6040 -4.6773 1.6898 37 1 2.4852 -6.0591 2.0642 38 1 3.2859 -6.1987 5.5701 39 1 2.9973 -7.0602 4.0395 40 1 5.5224 -5.8036 3.8914 41 1 8.5374 -8.9788 5.1085 42 1 7.0284 -11.9376 6.0194 43 1 7.6263 -10.3204 8.3554 44 1 9.9685 -12.1418 6.6167 45 1 9.4689 -10.8642 4.6078 46 1 4.8031 -10.4044 6.6097 47 1 3.7252 -8.3691 5.6832 48 1 1.0228 -5.3920 4.2311 49 1 1.5284 -3.7307 4.7651 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15774726_13915762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:36 Heat of formation + Delta-G solvation = -84.896119 kcal Electronic energy + Delta-G solvation = -31337.851142 eV Core-core repulsion = 26796.376493 eV Total energy + Delta-G solvation = -4541.474649 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.179 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.91181 -41.91923 -41.37818 -39.98466 -38.20839 -37.82129 -36.54299 -35.34571 -34.02991 -33.41134 -31.70498 -28.85453 -28.40271 -28.33864 -27.08937 -26.07721 -24.95239 -24.37212 -23.06047 -22.33265 -21.21656 -20.68240 -19.40914 -18.82256 -18.52555 -17.72488 -17.65757 -17.27875 -17.02726 -16.65330 -16.47974 -16.39704 -16.24707 -16.00362 -15.62179 -15.45358 -15.39678 -15.33039 -14.84770 -14.55509 -14.43054 -14.33877 -14.00640 -13.81413 -13.72998 -13.38061 -13.33934 -13.18335 -13.10667 -12.94604 -12.90839 -12.80650 -12.48384 -12.35429 -12.35172 -12.12416 -11.62462 -11.44775 -11.40807 -11.18005 -11.14551 -10.74422 -10.42085 -10.38144 -10.29451 -8.72236 -4.99118 0.23073 0.40836 1.07176 1.34518 1.63085 1.65222 1.96766 2.01304 2.84017 2.99887 3.02311 3.08402 3.25110 3.56410 3.56628 3.63016 3.64502 3.70246 3.76060 3.79187 3.90644 4.02452 4.12408 4.31391 4.34900 4.39596 4.46010 4.53385 4.55553 4.57988 4.59833 4.61686 4.72982 4.75886 4.76524 4.80396 4.83997 4.84935 4.88388 4.89681 5.00560 5.10377 5.23463 5.26412 5.29777 5.38453 5.50285 5.54750 5.97386 6.28157 6.44324 6.80097 7.12913 7.25176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.688 5.688 9 C 0.127 3.873 10 H 0.112 0.888 11 C -0.164 4.164 12 C 0.081 3.919 13 F -0.198 7.198 14 C 0.120 3.880 15 N -0.724 5.724 16 C 0.394 3.606 17 N -0.568 5.568 18 C 0.144 3.856 19 C -0.236 4.236 20 C -0.051 4.051 21 O -0.556 6.556 22 Si 0.761 3.239 23 C -0.011 4.011 24 C -0.237 4.237 25 C -0.137 4.137 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.404 0.596 41 H 0.165 0.835 42 H 0.109 0.891 43 H 0.394 0.606 44 H -0.296 1.296 45 H -0.289 1.289 46 H 0.148 0.852 47 H 0.157 0.843 48 H 0.153 0.847 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 1.768 2.652 4.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.347 5.347 9 C 0.023 3.977 10 H 0.130 0.870 11 C -0.203 4.203 12 C 0.062 3.938 13 F -0.178 7.178 14 C -0.004 4.004 15 N -0.356 5.356 16 C 0.158 3.842 17 N -0.286 5.286 18 C -0.013 4.013 19 C -0.242 4.242 20 C -0.163 4.163 21 O -0.363 6.363 22 Si 0.668 3.332 23 C -0.037 4.037 24 C -0.262 4.262 25 C -0.176 4.176 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.239 0.761 41 H 0.181 0.819 42 H 0.126 0.874 43 H 0.244 0.756 44 H -0.224 1.224 45 H -0.216 1.216 46 H 0.166 0.834 47 H 0.174 0.826 48 H 0.171 0.829 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.434 1.352 1.236 3.047 hybrid contribution -0.199 -0.230 0.072 0.313 sum -2.633 1.122 1.308 3.147 Atomic orbital electron populations 1.22469 0.93760 1.03810 1.03593 1.22382 0.94659 0.92536 0.81397 1.21897 1.02378 0.90943 1.04322 1.22475 1.01509 1.02312 0.97412 1.86321 1.71525 1.23337 1.47398 1.18289 0.78519 0.80744 0.82356 1.90903 1.42165 1.70985 1.43945 1.44488 1.54932 1.12043 1.23270 1.21938 0.98985 0.78075 0.98752 0.86959 1.24247 0.98969 1.02446 0.94657 1.22288 0.89574 0.84698 0.97224 1.92846 1.70210 1.60204 1.94584 1.22051 0.80161 0.95786 1.02422 1.44411 1.08425 1.21529 1.61214 1.18612 0.88491 0.87409 0.89722 1.67114 1.10486 1.24888 1.26114 1.22426 0.99641 0.87694 0.91501 1.21048 0.96060 1.00026 1.07043 1.24788 1.10498 0.96796 0.84193 1.86453 1.84471 1.48752 1.16660 0.93872 0.74811 0.85257 0.79255 1.21413 0.93649 0.95748 0.92854 1.21671 1.02111 0.96369 1.06061 1.24019 0.93504 1.04662 0.95381 0.91881 0.89391 0.91610 0.91369 0.88177 0.91144 0.91681 0.89338 0.92189 0.74949 0.91336 0.84749 0.89236 0.87448 0.76100 0.81886 0.87395 0.75609 1.22376 1.21571 0.83407 0.82556 0.82879 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.51 8.37 71.98 0.60 0.10 16 2 C 0.13 0.40 1.13 -10.79 -0.01 0.39 16 3 C -0.14 0.23 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 5 O -0.37 -2.27 9.94 -55.47 -0.55 -2.82 16 6 C 0.65 4.27 8.06 129.79 1.05 5.31 16 7 O -0.59 -6.47 11.48 19.79 0.23 -6.24 16 8 N -0.69 -0.40 5.19 -567.61 -2.94 -3.34 16 9 C 0.13 -0.51 4.32 45.52 0.20 -0.31 16 10 H 0.11 -0.25 7.47 -2.39 -0.02 -0.27 16 11 C -0.16 0.91 7.32 31.12 0.23 1.13 16 12 C 0.08 -0.55 1.73 -10.27 -0.02 -0.57 16 13 F -0.20 0.17 15.50 44.97 0.70 0.86 16 14 C 0.12 -0.96 4.64 86.38 0.40 -0.56 16 15 N -0.72 0.85 5.62 -345.07 -1.94 -1.09 16 16 C 0.39 0.97 7.65 133.06 1.02 1.99 16 17 N -0.57 -3.39 10.39 -193.25 -2.01 -5.40 16 18 C 0.14 0.37 9.84 84.62 0.83 1.20 16 19 C -0.24 -0.12 5.40 -19.76 -0.11 -0.23 16 20 C -0.05 0.04 2.84 71.23 0.20 0.24 16 21 O -0.56 0.30 12.78 -148.98 -1.90 -1.61 16 22 Si 0.76 -1.12 29.82 68.60 2.05 0.93 16 23 C -0.01 0.01 9.76 22.44 0.22 0.22 16 24 C -0.24 0.29 9.33 22.50 0.21 0.50 16 25 C -0.14 1.39 7.28 31.12 0.23 1.62 16 26 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 28 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 29 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 33 H 0.09 -0.02 8.14 -2.38 -0.02 -0.03 16 34 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.41 -0.48 7.88 -92.71 -0.73 -1.21 16 36 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.13 -1.27 7.90 -2.39 -0.02 -1.29 16 38 H 0.09 -0.87 7.92 -2.39 -0.02 -0.89 16 39 H 0.11 -1.29 7.64 -2.38 -0.02 -1.30 16 40 H 0.40 0.41 8.15 -92.70 -0.76 -0.35 16 41 H 0.16 -0.17 4.88 -2.91 -0.01 -0.18 16 42 H 0.11 -0.01 7.96 -2.39 -0.02 -0.03 16 43 H 0.39 -3.16 8.70 -74.06 -0.64 -3.80 16 44 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 45 H -0.29 -1.11 7.11 99.48 0.71 -0.40 16 46 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 47 H 0.16 -1.08 6.71 -2.91 -0.02 -1.10 16 48 H 0.15 -2.46 8.10 -2.39 -0.02 -2.48 16 49 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 Total: 0.00 -21.03 396.23 -1.18 -22.21 By element: Atomic # 1 Polarization: -14.31 SS G_CDS: -1.09 Total: -15.40 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.29 Total: 11.88 kcal Atomic # 7 Polarization: -2.93 SS G_CDS: -6.89 Total: -9.83 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -2.23 Total: -10.66 kcal Atomic # 9 Polarization: 0.17 SS G_CDS: 0.70 Total: 0.86 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.05 Total: 0.93 kcal Total: -21.03 -1.18 -22.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15774726_13915762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.682 kcal (2) G-P(sol) polarization free energy of solvation -21.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds