Wall clock time and date at job start Mon Mar 8 2021 08:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46959 * 2 1 4 4 C 1.52993 * 109.47123 * 239.99765 * 2 1 3 5 5 O 1.45203 * 109.46739 * 119.99925 * 2 1 3 6 6 C 1.34628 * 117.00428 * 60.00242 * 5 2 1 7 7 O 1.21512 * 120.00148 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00304 * 180.02562 * 6 5 2 9 9 C 1.46499 * 120.00357 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.84946 * 336.19444 * 9 8 6 11 11 C 1.53958 * 113.61524 * 107.46312 * 9 8 6 12 12 C 1.53777 * 87.02059 * 89.19995 * 11 9 8 13 13 F 1.39900 * 113.61665 * 270.77245 * 12 11 9 14 14 C 1.53001 * 113.61397 * 139.94989 * 12 11 9 15 15 N 1.46501 * 109.47056 * 85.86610 * 14 12 11 16 16 C 1.38609 * 120.00319 * 180.02562 * 15 14 12 17 17 N 1.29689 * 124.94704 * 359.95720 * 16 15 14 18 18 C 1.32119 * 116.86486 * 180.02562 * 17 16 15 19 19 C 1.33320 * 114.58192 * 359.97438 * 18 17 16 20 20 C 1.50698 * 125.95578 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47135 * 64.97381 * 20 19 18 22 22 Si 1.86290 * 109.47594 * 184.97512 * 20 19 18 23 23 S 1.70961 * 124.95151 * 180.02562 * 16 15 14 24 24 C 1.53777 * 113.61635 * 204.99806 * 9 8 6 25 25 H 1.09002 * 109.46785 * 300.00211 * 1 2 3 26 26 H 1.08998 * 109.46919 * 60.00031 * 1 2 3 27 27 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46768 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46564 * 299.99583 * 3 2 1 30 30 H 1.08994 * 109.47417 * 60.00012 * 3 2 1 31 31 H 1.08998 * 109.47056 * 299.99999 * 4 2 1 32 32 H 1.09003 * 109.47442 * 60.00051 * 4 2 1 33 33 H 1.09002 * 109.47200 * 180.02562 * 4 2 1 34 34 H 0.97004 * 119.99826 * 359.97438 * 8 6 5 35 35 H 1.09005 * 113.66560 * 334.67590 * 11 9 8 36 36 H 1.09000 * 113.61161 * 203.71995 * 11 9 8 37 37 H 1.08997 * 109.47418 * 325.86476 * 14 12 11 38 38 H 1.08997 * 109.47190 * 205.86380 * 14 12 11 39 39 H 0.97006 * 119.99700 * 0.02562 * 15 14 12 40 40 H 1.07998 * 122.70428 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.46694 * 304.97916 * 20 19 18 42 42 H 0.96702 * 114.00476 * 180.02562 * 21 20 19 43 43 H 1.48500 * 110.00210 * 300.00285 * 22 20 19 44 44 H 1.48509 * 110.00088 * 61.31804 * 22 20 19 45 45 H 1.09001 * 113.61981 * 156.25345 * 24 9 8 46 46 H 1.09004 * 113.69160 * 25.35579 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5095 0.5041 8 7 2.0671 -2.6653 2.4173 9 6 1.6731 -4.0664 2.5839 10 1 0.7588 -4.3159 2.0454 11 6 2.8222 -5.0629 2.3451 12 6 3.1478 -4.9225 3.8414 13 9 4.0434 -3.8859 4.1253 14 6 3.5353 -6.2426 4.5108 15 7 4.9694 -6.4801 4.3284 16 6 5.5549 -7.6224 4.8514 17 7 4.9264 -8.5411 5.5170 18 6 5.6437 -9.5653 5.9437 19 6 6.9366 -9.5088 5.6234 20 6 7.9816 -10.5351 5.9777 21 8 7.6840 -11.7661 5.3157 22 14 9.6573 -9.9280 5.4357 23 16 7.2108 -8.0247 4.7147 24 6 1.6735 -4.5366 4.0480 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 2.6267 -2.2364 3.0835 35 1 3.6048 -4.6795 1.6902 36 1 2.4840 -6.0600 2.0635 37 1 2.9715 -7.0585 4.0587 38 1 3.3083 -6.1904 5.5756 39 1 5.5092 -5.8378 3.8414 40 1 5.2168 -10.3827 6.5060 41 1 7.9840 -10.6939 7.0561 42 1 8.3167 -12.4742 5.4987 43 1 9.6672 -9.7076 3.9671 44 1 9.9924 -8.6647 6.1410 45 1 1.0207 -5.3897 4.2329 46 1 1.5299 -3.7300 4.7671 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15774726_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:40 Heat of formation + Delta-G solvation = -75.641501 kcal Electronic energy + Delta-G solvation = -29832.073074 eV Core-core repulsion = 25380.151982 eV Total energy + Delta-G solvation = -4451.921092 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.135 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.00618 -41.94475 -40.86183 -40.00855 -38.13219 -37.79453 -36.70235 -35.37039 -34.02175 -31.76073 -29.34585 -28.41690 -28.35374 -27.17289 -26.46547 -25.04559 -24.11516 -23.09580 -21.27449 -20.91307 -20.68728 -19.91727 -19.34593 -18.44758 -17.83544 -17.68705 -17.32156 -17.23664 -16.99687 -16.49467 -16.44434 -16.06329 -15.69801 -15.59932 -15.47486 -15.39278 -15.30269 -14.72330 -14.56405 -14.51542 -14.30531 -13.93232 -13.80426 -13.39577 -13.21380 -13.16135 -12.96700 -12.92783 -12.92436 -12.85277 -12.56485 -12.50426 -12.37050 -12.19019 -11.70893 -11.54983 -11.45536 -11.25821 -11.19819 -10.83314 -10.44982 -10.33708 -10.24776 -8.91148 -5.20123 -0.22243 -0.08864 0.49554 1.03885 1.23249 1.55939 1.62774 1.83125 1.91329 1.93125 2.92497 2.97990 2.98725 3.14833 3.45233 3.50340 3.54985 3.67145 3.68749 3.74493 3.89126 3.96950 4.27734 4.29397 4.42668 4.47200 4.50391 4.55875 4.56537 4.57081 4.61924 4.71519 4.72596 4.75988 4.79550 4.81845 4.82575 4.84987 4.94661 5.08592 5.22131 5.24570 5.34812 5.51766 5.60840 5.88527 6.25514 6.78153 6.91841 7.22740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.648 3.352 7 O -0.588 6.588 8 N -0.688 5.688 9 C 0.131 3.869 10 H 0.114 0.886 11 C -0.163 4.163 12 C 0.081 3.919 13 F -0.195 7.195 14 C 0.131 3.869 15 N -0.686 5.686 16 C 0.327 3.673 17 N -0.565 5.565 18 C 0.112 3.888 19 C -0.272 4.272 20 C -0.022 4.022 21 O -0.563 6.563 22 Si 0.754 3.246 23 S 0.048 5.952 24 C -0.138 4.138 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.421 0.579 40 H 0.194 0.806 41 H 0.109 0.891 42 H 0.405 0.595 43 H -0.286 1.286 44 H -0.277 1.277 45 H 0.148 0.852 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 -1.126 2.549 3.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.347 5.347 9 C 0.026 3.974 10 H 0.132 0.868 11 C -0.201 4.201 12 C 0.062 3.938 13 F -0.175 7.175 14 C 0.006 3.994 15 N -0.326 5.326 16 C -0.044 4.044 17 N -0.292 5.292 18 C -0.038 4.038 19 C -0.394 4.394 20 C -0.135 4.135 21 O -0.373 6.373 22 Si 0.659 3.341 23 S 0.296 5.704 24 C -0.177 4.177 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.260 0.740 40 H 0.211 0.789 41 H 0.127 0.873 42 H 0.257 0.743 43 H -0.213 1.213 44 H -0.203 1.203 45 H 0.166 0.834 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.563 0.289 1.154 1.964 hybrid contribution -0.236 0.101 0.492 0.555 sum 1.326 0.390 1.647 2.150 Atomic orbital electron populations 1.22474 0.93795 1.03810 1.03596 1.22386 0.94640 0.92540 0.81387 1.21899 1.02388 0.90923 1.04325 1.22474 1.01534 1.02315 0.97392 1.86319 1.71534 1.23278 1.47422 1.18268 0.78508 0.80752 0.82323 1.90907 1.42050 1.70982 1.43960 1.44465 1.54978 1.11949 1.23320 1.21923 0.98985 0.78147 0.98327 0.86839 1.24264 0.99220 1.02435 0.94221 1.22312 0.89737 0.84297 0.97480 1.92847 1.69906 1.60180 1.94602 1.21920 0.79974 0.95523 1.02020 1.43928 1.09782 1.19607 1.59317 1.23888 0.92769 0.92296 0.95405 1.66487 1.37370 1.04859 1.20475 1.21635 0.88746 0.95593 0.97851 1.24660 0.99590 1.01781 1.13364 1.23811 1.03375 0.85720 1.00590 1.86466 1.56568 1.21542 1.72765 0.94247 0.78894 0.82996 0.77993 1.84233 1.08851 1.20276 1.57007 1.23995 0.93361 1.04541 0.95771 0.91913 0.89357 0.91625 0.91336 0.88155 0.91170 0.91680 0.89322 0.92134 0.74905 0.90606 0.85002 0.88217 0.90226 0.74033 0.78936 0.87344 0.74318 1.21255 1.20310 0.83422 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 2 C 0.13 0.42 1.13 -10.79 -0.01 0.41 16 3 C -0.14 0.21 8.85 71.98 0.64 0.85 16 4 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 5 O -0.37 -2.34 9.94 -55.37 -0.55 -2.89 16 6 C 0.65 4.49 8.06 129.79 1.05 5.53 16 7 O -0.59 -6.69 11.48 19.80 0.23 -6.46 16 8 N -0.69 -0.77 5.19 -567.34 -2.94 -3.71 16 9 C 0.13 -0.35 4.33 45.58 0.20 -0.16 16 10 H 0.11 -0.10 7.46 -2.39 -0.02 -0.12 16 11 C -0.16 0.68 7.34 31.18 0.23 0.91 16 12 C 0.08 -0.37 1.71 -10.27 -0.02 -0.39 16 13 F -0.19 0.07 15.57 44.97 0.70 0.77 16 14 C 0.13 -0.37 5.68 86.38 0.49 0.12 16 15 N -0.69 -0.75 5.61 -351.01 -1.97 -2.72 16 16 C 0.33 2.00 8.09 179.32 1.45 3.45 16 17 N -0.57 -4.54 10.14 -202.04 -2.05 -6.59 16 18 C 0.11 0.70 11.24 83.54 0.94 1.64 16 19 C -0.27 -1.57 5.76 24.57 0.14 -1.43 16 20 C -0.02 0.01 2.98 71.24 0.21 0.22 16 21 O -0.56 0.34 12.86 -148.98 -1.92 -1.58 16 22 Si 0.75 -0.83 31.07 68.60 2.13 1.30 16 23 S 0.05 0.32 20.59 -56.49 -1.16 -0.84 16 24 C -0.14 1.04 7.28 31.12 0.23 1.27 16 25 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 28 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 32 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.41 -0.34 7.89 -92.71 -0.73 -1.07 16 35 H 0.08 -0.08 8.14 -2.38 -0.02 -0.10 16 36 H 0.13 -0.95 7.92 -2.39 -0.02 -0.97 16 37 H 0.10 -0.41 7.87 -2.39 -0.02 -0.43 16 38 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.42 -0.29 8.20 -92.70 -0.76 -1.05 16 40 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.11 -0.60 7.96 -2.39 -0.02 -0.62 16 42 H 0.41 -4.66 8.74 -74.06 -0.65 -5.31 16 43 H -0.29 -1.91 7.11 99.48 0.71 -1.20 16 44 H -0.28 -1.21 7.11 99.48 0.71 -0.51 16 45 H 0.15 -1.78 8.10 -2.39 -0.02 -1.80 16 46 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 Total: 0.00 -21.64 391.23 -1.85 -23.49 By element: Atomic # 1 Polarization: -12.14 SS G_CDS: -1.07 Total: -13.20 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 6.74 Total: 12.42 kcal Atomic # 7 Polarization: -6.06 SS G_CDS: -6.96 Total: -13.02 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -2.24 Total: -10.92 kcal Atomic # 9 Polarization: 0.07 SS G_CDS: 0.70 Total: 0.77 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.13 Total: 1.30 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.16 Total: -0.84 kcal Total: -21.64 -1.85 -23.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15774726_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.148 kcal (2) G-P(sol) polarization free energy of solvation -21.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds