Wall clock time and date at job start Mon Mar 8 2021 08:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33329 * 125.94883 * 2 1 4 4 C 1.50704 * 122.70801 * 359.97204 * 3 2 1 5 5 O 1.42895 * 109.47380 * 44.54401 * 4 3 2 6 6 Si 1.86306 * 109.46583 * 164.54151 * 4 3 2 7 7 N 1.32120 * 114.57693 * 179.70222 * 3 2 1 8 8 C 1.29686 * 116.86704 * 0.27174 * 7 3 2 9 9 N 1.38613 * 124.94729 * 180.02562 * 8 7 3 10 10 C 1.46492 * 119.99984 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47245 * 179.97438 * 10 9 8 12 12 F 1.39898 * 112.85151 * 50.33421 * 11 10 9 13 13 C 1.53783 * 113.61324 * 181.52908 * 11 10 9 14 14 C 1.53777 * 87.08202 * 139.98223 * 13 11 10 15 15 H 1.08997 * 113.61732 * 219.93727 * 14 13 11 16 16 N 1.46502 * 113.61755 * 89.11119 * 14 13 11 17 17 C 1.34776 * 120.00019 * 154.99843 * 16 14 13 18 18 O 1.21511 * 120.00309 * 0.02562 * 17 16 14 19 19 O 1.34639 * 119.99684 * 180.02562 * 17 16 14 20 20 C 1.45206 * 117.00043 * 180.02562 * 19 17 16 21 21 C 1.53009 * 109.46782 * 59.99415 * 20 19 17 22 22 C 1.52990 * 109.47487 * 179.97438 * 20 19 17 23 23 C 1.53000 * 109.46954 * 300.00239 * 20 19 17 24 24 C 1.53782 * 113.61444 * 279.13738 * 11 10 9 25 25 S 1.70966 * 110.10138 * 359.97438 * 8 7 3 26 26 H 1.08991 * 109.47481 * 84.23285 * 1 2 3 27 27 H 1.09006 * 109.46679 * 204.23395 * 1 2 3 28 28 H 1.09003 * 109.47170 * 324.22770 * 1 2 3 29 29 H 1.08999 * 109.46849 * 284.53801 * 4 3 2 30 30 H 0.96701 * 113.99884 * 180.02562 * 5 4 3 31 31 H 1.48503 * 109.99434 * 178.67930 * 6 4 3 32 32 H 1.48492 * 110.00142 * 299.99429 * 6 4 3 33 33 H 0.97001 * 119.99999 * 359.97438 * 9 8 7 34 34 H 1.09008 * 109.47390 * 300.00000 * 10 9 8 35 35 H 1.09004 * 109.47010 * 59.99412 * 10 9 8 36 36 H 1.08997 * 113.61308 * 254.53057 * 13 11 10 37 37 H 1.09002 * 113.61585 * 25.43270 * 13 11 10 38 38 H 0.97001 * 120.00065 * 335.01041 * 16 14 13 39 39 H 1.09005 * 109.46981 * 60.00465 * 21 20 19 40 40 H 1.08996 * 109.46834 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.47146 * 300.00422 * 21 20 19 42 42 H 1.09006 * 109.47201 * 59.99911 * 22 20 19 43 43 H 1.08996 * 109.47599 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.47171 * 300.00083 * 22 20 19 45 45 H 1.08995 * 109.47522 * 59.99243 * 23 20 19 46 46 H 1.08996 * 109.46789 * 180.02562 * 23 20 19 47 47 H 1.09006 * 109.46641 * 299.99419 * 23 20 19 48 48 H 1.09005 * 113.61418 * 334.56317 * 24 11 10 49 49 H 1.08998 * 113.61533 * 105.47101 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.6732 2.5776 0.9439 6 14 3.0920 3.6776 0.4678 7 7 3.5850 0.8189 0.0062 8 6 3.9315 -0.4309 0.0060 9 7 5.2385 -0.8925 0.0125 10 6 5.5067 -2.3326 0.0121 11 6 7.0181 -2.5700 0.0194 12 9 7.6775 -1.8425 1.0159 13 6 7.4083 -4.0570 -0.0181 14 6 8.5351 -3.6560 -0.9847 15 1 8.6839 -4.3643 -1.7997 16 7 9.7844 -3.2927 -0.3114 17 6 10.9591 -3.4092 -0.9619 18 8 10.9819 -3.8151 -2.1070 19 8 12.1073 -3.0758 -0.3428 20 6 13.3345 -3.2260 -1.1043 21 6 13.2703 -2.3454 -2.3540 22 6 14.5249 -2.8013 -0.2423 23 6 13.5011 -4.6891 -1.5196 24 6 7.6683 -2.4428 -1.3684 25 16 2.5413 -1.4260 -0.0020 26 1 -0.3634 0.1033 -1.0224 27 1 -0.3633 -0.9372 0.4219 28 1 -0.3634 0.8338 0.6007 29 1 1.3692 2.7272 -0.9956 30 1 0.2714 3.4556 0.9968 31 1 2.5721 5.0684 0.4398 32 1 3.6078 3.3554 1.8224 33 1 5.9755 -0.2619 0.0173 34 1 5.0632 -2.7851 0.8992 35 1 5.0727 -2.7827 -0.8808 36 1 7.7680 -4.4382 0.9376 37 1 6.6506 -4.6960 -0.4717 38 1 9.7663 -2.9685 0.6027 39 1 13.1515 -1.3030 -2.0582 40 1 14.1916 -2.4579 -2.9253 41 1 12.4221 -2.6477 -2.9682 42 1 14.5708 -3.4283 0.6482 43 1 15.4460 -2.9136 -0.8140 44 1 14.4060 -1.7588 0.0532 45 1 12.6529 -4.9914 -2.1338 46 1 14.4225 -4.8020 -2.0908 47 1 13.5468 -5.3165 -0.6293 48 1 6.9818 -2.6397 -2.1920 49 1 8.2375 -1.5228 -1.5013 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15774726_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:44 Heat of formation + Delta-G solvation = -77.990542 kcal Electronic energy + Delta-G solvation = -32042.051046 eV Core-core repulsion = 27434.490472 eV Total energy + Delta-G solvation = -4607.560573 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.151 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -48.93318 -41.90236 -41.02430 -40.00557 -38.21020 -37.80297 -36.72589 -35.33574 -34.03303 -32.88086 -29.91653 -28.38690 -28.35307 -28.31157 -27.07774 -25.64987 -24.73027 -24.02041 -23.08219 -21.23896 -20.90058 -20.26530 -19.42277 -19.24391 -18.40038 -17.73493 -17.57632 -17.24967 -17.16046 -16.98893 -16.42298 -16.31522 -16.17323 -15.79199 -15.53021 -15.47736 -15.38588 -15.19269 -14.74636 -14.51062 -14.22509 -14.08069 -13.99152 -13.79015 -13.59895 -13.37320 -13.31707 -13.17128 -13.11285 -13.03261 -12.93449 -12.89681 -12.81075 -12.47750 -12.43337 -12.33734 -11.82885 -11.64132 -11.42898 -11.38665 -11.16192 -11.04676 -10.69475 -10.48931 -10.28459 -10.05208 -8.66636 -4.80160 -0.03755 0.12195 0.69856 1.08709 1.30640 1.59126 1.66750 1.75494 1.85151 2.01733 2.98506 3.02560 3.03276 3.15091 3.20323 3.56491 3.62411 3.71581 3.77351 3.84938 3.91926 4.11261 4.24590 4.29496 4.36990 4.38715 4.43564 4.49789 4.59444 4.60374 4.62233 4.74376 4.77552 4.79819 4.81769 4.83641 4.85158 4.86921 4.88392 4.89514 5.08504 5.11272 5.25022 5.27562 5.33563 5.39409 5.51822 5.56140 6.20914 6.29615 6.60999 6.86941 7.26846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.248 4.248 3 C 0.086 3.914 4 C -0.041 4.041 5 O -0.548 6.548 6 Si 0.773 3.227 7 N -0.565 5.565 8 C 0.309 3.691 9 N -0.689 5.689 10 C 0.112 3.888 11 C 0.082 3.918 12 F -0.197 7.197 13 C -0.138 4.138 14 C 0.128 3.872 15 H 0.114 0.886 16 N -0.689 5.689 17 C 0.648 3.352 18 O -0.588 6.588 19 O -0.372 6.372 20 C 0.127 3.873 21 C -0.180 4.180 22 C -0.139 4.139 23 C -0.179 4.179 24 C -0.162 4.162 25 S 0.136 5.864 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.399 0.601 31 H -0.277 1.277 32 H -0.325 1.325 33 H 0.414 0.586 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.413 0.587 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.137 0.863 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -3.367 -2.232 4.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.371 4.371 3 C -0.043 4.043 4 C -0.153 4.153 5 O -0.358 6.358 6 Si 0.680 3.320 7 N -0.294 5.294 8 C -0.062 4.062 9 N -0.330 5.330 10 C -0.012 4.012 11 C 0.064 3.936 12 F -0.177 7.177 13 C -0.176 4.176 14 C 0.023 3.977 15 H 0.132 0.868 16 N -0.348 5.348 17 C 0.401 3.599 18 O -0.479 6.479 19 O -0.287 6.287 20 C 0.091 3.909 21 C -0.237 4.237 22 C -0.196 4.196 23 C -0.236 4.236 24 C -0.200 4.200 25 S 0.385 5.615 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.250 0.750 31 H -0.204 1.204 32 H -0.254 1.254 33 H 0.252 0.748 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.172 0.828 38 H 0.250 0.750 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.080 0.920 48 H 0.155 0.845 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.249 -4.455 -2.133 4.946 hybrid contribution -0.694 1.799 1.090 2.215 sum -0.445 -2.655 -1.043 2.888 Atomic orbital electron populations 1.20299 0.85766 1.03687 1.03324 1.25406 1.02270 0.93245 1.16165 1.19048 0.86606 0.95977 1.02701 1.24055 0.97553 0.97212 0.96506 1.86445 1.49407 1.37816 1.62137 0.93028 0.82248 0.73316 0.83416 1.65571 1.17373 1.17758 1.28652 1.23384 0.92592 0.91480 0.98783 1.43818 1.01341 1.07691 1.80180 1.22196 0.94231 0.79461 1.05291 1.22233 0.90016 0.93950 0.87434 1.92865 1.82294 1.79327 1.63242 1.24026 0.97995 0.93688 1.01921 1.21973 0.81228 0.97707 0.96742 0.86755 1.44496 1.02894 1.69254 1.18153 1.18278 0.81781 0.76613 0.83203 1.90904 1.87089 1.51899 1.17971 1.86322 1.15000 1.80595 1.46754 1.22372 0.80253 0.96642 0.91656 1.22475 1.04453 0.99341 0.97434 1.21900 0.94911 1.02593 1.00187 1.22470 1.04211 0.94411 1.02551 1.24264 0.99461 0.99827 0.96488 1.83633 0.95140 1.09227 1.73541 0.90386 0.91326 0.88963 0.87710 0.74958 1.20434 1.25392 0.74777 0.89520 0.86766 0.88404 0.82819 0.74976 0.92158 0.89379 0.91571 0.91211 0.88194 0.91375 0.91527 0.89413 0.91958 0.84501 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.10 9.97 71.24 0.71 0.61 16 2 C -0.25 -1.27 6.49 24.58 0.16 -1.11 16 3 C 0.09 0.61 6.03 41.41 0.25 0.86 16 4 C -0.04 -0.13 2.73 71.24 0.19 0.07 16 5 O -0.55 -1.39 10.21 -148.98 -1.52 -2.91 16 6 Si 0.77 3.64 31.87 68.60 2.19 5.83 16 7 N -0.57 -4.46 8.60 -189.85 -1.63 -6.09 16 8 C 0.31 1.16 8.24 179.32 1.48 2.63 16 9 N -0.69 0.83 5.63 -351.01 -1.98 -1.14 16 10 C 0.11 -0.85 5.20 86.38 0.45 -0.40 16 11 C 0.08 -0.59 1.63 -10.27 -0.02 -0.61 16 12 F -0.20 0.23 15.78 44.97 0.71 0.94 16 13 C -0.14 1.44 7.28 31.12 0.23 1.67 16 14 C 0.13 -0.61 4.33 45.58 0.20 -0.41 16 15 H 0.11 -0.36 7.46 -2.39 -0.02 -0.37 16 16 N -0.69 0.02 5.19 -567.32 -2.94 -2.92 16 17 C 0.65 3.90 8.06 129.79 1.05 4.95 16 18 O -0.59 -6.03 11.48 19.81 0.23 -5.81 16 19 O -0.37 -2.15 9.94 -55.48 -0.55 -2.70 16 20 C 0.13 0.36 1.13 -10.79 -0.01 0.35 16 21 C -0.18 -0.54 8.37 71.99 0.60 0.06 16 22 C -0.14 0.24 8.85 71.98 0.64 0.88 16 23 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 24 C -0.16 1.07 7.34 31.18 0.23 1.30 16 25 S 0.14 0.15 22.32 -56.49 -1.26 -1.11 16 26 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 28 H 0.09 0.25 5.69 -2.39 -0.01 0.24 16 29 H 0.11 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.40 -2.39 8.74 -74.06 -0.65 -3.04 16 31 H -0.28 -1.62 7.11 99.48 0.71 -0.91 16 32 H -0.33 -4.98 7.11 99.48 0.71 -4.28 16 33 H 0.41 -0.14 8.36 -92.71 -0.77 -0.91 16 34 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 35 H 0.11 -1.36 7.98 -2.38 -0.02 -1.38 16 36 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 37 H 0.15 -2.50 8.10 -2.39 -0.02 -2.52 16 38 H 0.41 -0.67 7.89 -92.71 -0.73 -1.40 16 39 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 40 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.07 0.52 5.88 -2.39 -0.01 0.50 16 42 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 43 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 45 H 0.07 0.49 5.88 -2.39 -0.01 0.47 16 46 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 48 H 0.14 -1.47 7.99 -2.38 -0.02 -1.48 16 49 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -21.84 408.89 -1.12 -22.96 By element: Atomic # 1 Polarization: -16.93 SS G_CDS: -1.11 Total: -18.04 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.75 Total: 10.99 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -6.55 Total: -10.15 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.84 Total: -11.42 kcal Atomic # 9 Polarization: 0.23 SS G_CDS: 0.71 Total: 0.94 kcal Atomic # 14 Polarization: 3.64 SS G_CDS: 2.19 Total: 5.83 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.26 Total: -1.11 kcal Total: -21.84 -1.12 -22.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15774726_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.035 kcal (2) G-P(sol) polarization free energy of solvation -21.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds