Wall clock time and date at job start Mon Mar 8 2021 08:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00206 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.84770 * 25.33791 * 9 8 6 11 11 C 1.53781 * 113.61469 * 156.53036 * 9 8 6 12 12 C 1.53777 * 87.08063 * 89.11741 * 11 9 8 13 13 F 1.39904 * 113.61444 * 270.88442 * 12 11 9 14 14 C 1.53008 * 113.61606 * 140.06545 * 12 11 9 15 15 N 1.46496 * 109.46977 * 179.97438 * 14 12 11 16 16 C 1.39141 * 119.99765 * 179.97438 * 15 14 12 17 17 N 1.32340 * 119.72048 * 0.02562 * 16 15 14 18 18 C 1.32004 * 121.65378 * 179.97438 * 17 16 15 19 19 C 1.37986 * 120.89867 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.32946 * 179.97438 * 19 18 17 21 21 O 1.42899 * 109.47095 * 120.00085 * 20 19 18 22 22 Si 1.86296 * 109.46826 * 0.02562 * 20 19 18 23 23 C 1.38913 * 119.34677 * 0.02562 * 19 18 17 24 24 C 1.38448 * 118.48191 * 359.74566 * 23 19 18 25 25 F 1.35098 * 120.47058 * 180.26411 * 24 23 19 26 26 C 1.53781 * 113.61422 * 254.14023 * 9 8 6 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 33 33 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 34 34 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 35 35 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 36 36 H 0.97003 * 119.99726 * 0.02562 * 8 6 5 37 37 H 1.09000 * 113.61796 * 203.66689 * 11 9 8 38 38 H 1.09004 * 113.61270 * 334.57087 * 11 9 8 39 39 H 1.09000 * 109.46636 * 300.00077 * 14 12 11 40 40 H 1.08998 * 109.46472 * 60.00109 * 14 12 11 41 41 H 0.96997 * 120.00543 * 0.02562 * 15 14 12 42 42 H 1.07999 * 119.55647 * 180.02562 * 18 17 16 43 43 H 1.08997 * 109.46734 * 240.00273 * 20 19 18 44 44 H 0.96701 * 114.00312 * 300.00273 * 21 20 19 45 45 H 1.48506 * 110.00054 * 180.02562 * 22 20 19 46 46 H 1.48507 * 110.00105 * 301.31831 * 22 20 19 47 47 H 1.08000 * 120.75942 * 179.97438 * 23 19 18 48 48 H 1.08996 * 113.61753 * 25.43114 * 26 9 8 49 49 H 1.09007 * 113.61376 * 156.33851 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6741 -4.0668 2.5832 10 1 1.4467 -4.5579 1.6370 11 6 2.6275 -4.8723 3.4816 12 6 1.7557 -4.4305 4.6688 13 9 2.1606 -3.2201 5.2417 14 6 1.5288 -5.5322 5.7061 15 7 0.6918 -5.0158 6.7918 16 6 0.3478 -5.8412 7.8579 17 7 0.7802 -7.0916 7.8856 18 6 0.4775 -7.9075 8.8782 19 6 -0.3065 -7.4821 9.9311 20 6 -0.6447 -8.4245 11.0574 21 8 -0.1501 -7.8928 12.2881 22 14 0.1421 -10.0825 10.7371 23 6 -0.7818 -6.1768 9.9421 24 6 -0.4442 -5.3424 8.8901 25 9 -0.8801 -4.0639 8.8627 26 6 0.5993 -4.2804 3.6621 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2489 36 1 2.6277 -2.2368 3.0829 37 1 2.6002 -5.9459 3.2955 38 1 3.6412 -4.4725 3.5117 39 1 1.0305 -6.3788 5.2338 40 1 2.4887 -5.8545 6.1096 41 1 0.3768 -4.0987 6.7672 42 1 0.8491 -8.9214 8.8666 43 1 -1.7265 -8.5414 11.1207 44 1 0.8079 -7.7620 12.3034 45 1 -0.1844 -11.0213 11.8405 46 1 -0.3394 -10.6320 9.4442 47 1 -1.3974 -5.8200 10.7545 48 1 -0.0234 -3.4033 3.8378 49 1 0.0184 -5.1927 3.5252 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15774726_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:49 Heat of formation + Delta-G solvation = -128.870697 kcal Electronic energy + Delta-G solvation = -34062.600050 eV Core-core repulsion = 29049.764544 eV Total energy + Delta-G solvation = -5012.835506 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.169 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.99018 -48.91881 -41.92136 -41.41507 -39.98724 -38.25817 -37.83544 -36.58929 -35.35323 -34.04971 -33.24735 -31.83608 -28.92058 -28.40408 -28.33914 -27.11400 -26.26597 -25.23613 -24.14078 -23.00664 -22.78958 -21.22209 -20.72772 -19.57341 -19.29719 -18.55289 -18.36469 -17.71867 -17.61379 -17.28700 -17.17247 -16.99196 -16.80292 -16.37152 -16.35473 -16.04513 -15.80030 -15.55859 -15.42221 -15.39305 -15.23093 -15.03899 -14.54622 -14.37380 -14.34350 -14.04661 -13.78054 -13.72702 -13.48613 -13.37590 -13.18994 -13.09524 -12.94672 -12.90957 -12.81208 -12.57075 -12.48537 -12.35279 -12.11432 -11.67788 -11.48639 -11.43488 -11.22890 -11.18035 -10.76154 -10.71317 -10.41218 -10.30342 -8.80946 -4.95426 -0.10703 0.07971 1.06601 1.33184 1.64994 1.67516 1.86406 2.02085 2.52364 2.97150 2.98381 3.01593 3.06143 3.21794 3.34927 3.48817 3.55025 3.65776 3.66792 3.70164 3.75937 3.84928 3.90550 3.99144 4.34151 4.36139 4.43488 4.46954 4.49002 4.57896 4.58480 4.59731 4.64685 4.70940 4.72838 4.75527 4.79325 4.83869 4.84599 4.88054 4.91064 4.96860 5.10270 5.23393 5.26358 5.31279 5.38064 5.54260 5.87223 6.07178 6.28074 6.79280 6.88068 7.25030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.688 5.688 9 C 0.129 3.871 10 H 0.112 0.888 11 C -0.136 4.136 12 C 0.077 3.923 13 F -0.198 7.198 14 C 0.130 3.870 15 N -0.717 5.717 16 C 0.383 3.617 17 N -0.521 5.521 18 C 0.149 3.851 19 C -0.205 4.205 20 C -0.061 4.061 21 O -0.557 6.557 22 Si 0.777 3.223 23 C -0.041 4.041 24 C -0.040 4.040 25 F -0.143 7.143 26 C -0.164 4.164 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.414 0.586 37 H 0.150 0.850 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.414 0.586 42 H 0.187 0.813 43 H 0.110 0.890 44 H 0.396 0.604 45 H -0.299 1.299 46 H -0.276 1.276 47 H 0.152 0.848 48 H 0.070 0.930 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -2.155 -0.672 4.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.347 5.347 9 C 0.025 3.975 10 H 0.130 0.870 11 C -0.174 4.174 12 C 0.058 3.942 13 F -0.178 7.178 14 C 0.007 3.993 15 N -0.350 5.350 16 C 0.144 3.856 17 N -0.239 5.239 18 C -0.008 4.008 19 C -0.210 4.210 20 C -0.172 4.172 21 O -0.365 6.365 22 Si 0.683 3.317 23 C -0.067 4.067 24 C -0.066 4.066 25 F -0.122 7.122 26 C -0.202 4.202 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.168 0.832 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.251 0.749 42 H 0.203 0.797 43 H 0.128 0.872 44 H 0.246 0.754 45 H -0.227 1.227 46 H -0.203 1.203 47 H 0.170 0.830 48 H 0.089 0.911 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.818 -3.471 -1.960 5.520 hybrid contribution -1.320 1.888 1.066 2.538 sum 2.498 -1.583 -0.894 3.090 Atomic orbital electron populations 1.22474 0.94038 1.03727 1.03467 1.22385 0.94472 0.92603 0.81519 1.21898 1.02497 0.90912 1.04221 1.22470 1.01678 1.02287 0.97200 1.86322 1.71556 1.23272 1.47411 1.18279 0.78548 0.80806 0.82257 1.90904 1.41953 1.70849 1.44261 1.44478 1.54934 1.12152 1.23138 1.21915 0.96064 0.79396 1.00141 0.86993 1.23977 0.99160 1.03932 0.90361 1.22406 0.98151 0.81099 0.92496 1.92848 1.91583 1.47109 1.86277 1.21813 0.96143 0.95281 0.86095 1.44427 1.55852 1.13872 1.20857 1.18499 0.90576 0.89307 0.87174 1.67338 1.26384 1.01762 1.28376 1.22733 0.91834 0.98883 0.87304 1.21014 1.04182 0.95687 1.00162 1.25040 1.03427 1.05247 0.83448 1.86479 1.29581 1.86988 1.33437 0.93790 0.89171 0.72126 0.76649 1.21427 0.96513 0.92796 0.95947 1.18189 1.07136 0.81518 0.99765 1.91466 1.88537 1.35605 1.96640 1.24262 0.96811 1.05031 0.94138 0.92191 0.89332 0.91687 0.91137 0.88173 0.91374 0.91625 0.89378 0.91878 0.74929 0.83162 0.88315 0.88029 0.89923 0.74928 0.79656 0.87215 0.75400 1.22655 1.20269 0.82991 0.91123 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 2 C 0.13 0.43 1.13 -10.79 -0.01 0.41 16 3 C -0.14 0.20 8.85 71.98 0.64 0.84 16 4 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 5 O -0.37 -2.36 9.94 -55.45 -0.55 -2.91 16 6 C 0.65 4.51 8.06 129.79 1.05 5.56 16 7 O -0.59 -6.69 11.50 19.80 0.23 -6.47 16 8 N -0.69 -0.77 5.18 -567.61 -2.94 -3.71 16 9 C 0.13 -0.39 4.30 45.52 0.20 -0.19 16 10 H 0.11 -0.15 7.50 -2.39 -0.02 -0.16 16 11 C -0.14 1.15 7.28 31.12 0.23 1.38 16 12 C 0.08 -0.39 1.66 -10.17 -0.02 -0.41 16 13 F -0.20 -0.01 15.74 44.97 0.71 0.69 16 14 C 0.13 -0.61 5.39 86.38 0.47 -0.14 16 15 N -0.72 0.08 5.62 -344.81 -1.94 -1.86 16 16 C 0.38 1.00 7.49 133.08 1.00 2.00 16 17 N -0.52 -0.61 9.57 -193.04 -1.85 -2.46 16 18 C 0.15 -0.33 9.84 84.61 0.83 0.50 16 19 C -0.21 0.34 5.40 -19.76 -0.11 0.23 16 20 C -0.06 0.20 2.84 71.24 0.20 0.40 16 21 O -0.56 1.09 12.78 -148.98 -1.90 -0.81 16 22 Si 0.78 -4.21 29.82 68.60 2.05 -2.17 16 23 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 24 C -0.04 -0.16 7.35 22.59 0.17 0.01 16 25 F -0.14 -0.91 16.65 44.97 0.75 -0.16 16 26 C -0.16 0.69 7.35 31.21 0.23 0.92 16 27 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.06 0.56 5.88 -2.38 -0.01 0.55 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 34 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.41 -0.30 7.92 -92.71 -0.73 -1.04 16 37 H 0.15 -2.04 8.10 -2.39 -0.02 -2.06 16 38 H 0.10 -0.83 8.14 -2.38 -0.02 -0.85 16 39 H 0.10 -0.69 7.95 -2.39 -0.02 -0.71 16 40 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.41 0.20 7.66 -92.71 -0.71 -0.51 16 42 H 0.19 -1.44 4.88 -2.91 -0.01 -1.46 16 43 H 0.11 -0.24 7.96 -2.39 -0.02 -0.26 16 44 H 0.40 -3.92 8.70 -74.06 -0.64 -4.57 16 45 H -0.30 -0.80 7.11 99.48 0.71 -0.09 16 46 H -0.28 0.43 7.11 99.48 0.71 1.14 16 47 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 48 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.13 -0.99 7.97 -2.38 -0.02 -1.01 16 Total: 0.00 -19.42 404.29 -0.19 -19.61 By element: Atomic # 1 Polarization: -10.41 SS G_CDS: -1.03 Total: -11.44 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 6.29 Total: 11.67 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -6.72 Total: -8.02 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -2.23 Total: -10.19 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 1.46 Total: 0.54 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.05 Total: -2.17 kcal Total: -19.42 -0.19 -19.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15774726_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.262 kcal (2) G-P(sol) polarization free energy of solvation -19.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds