Wall clock time and date at job start Mon Mar 8 2021 10:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47401 * 2 1 4 4 C 1.50700 * 109.46845 * 119.99635 * 2 1 3 5 5 C 1.33330 * 125.94911 * 65.00065 * 4 2 1 6 6 N 1.32124 * 114.58023 * 179.69557 * 5 4 2 7 7 C 1.29687 * 116.86524 * 0.26640 * 6 5 4 8 8 N 1.38608 * 124.95273 * 180.02562 * 7 6 5 9 9 C 1.46502 * 119.99645 * 0.02562 * 8 7 6 10 10 H 1.08994 * 112.84979 * 23.80738 * 9 8 7 11 11 C 1.53775 * 113.61266 * 155.00460 * 9 8 7 12 12 C 1.53780 * 87.08398 * 89.11339 * 11 9 8 13 13 H 1.08996 * 113.61867 * 270.88302 * 12 11 9 14 14 C 1.53001 * 113.61266 * 139.97834 * 12 11 9 15 15 F 1.39905 * 109.47185 * 65.00530 * 14 12 11 16 16 C 1.53779 * 87.08108 * 25.43488 * 12 11 9 17 17 S 1.70969 * 110.10172 * 0.02562 * 7 6 5 18 18 H 0.96703 * 113.99659 * 300.00613 * 1 2 3 19 19 H 1.08999 * 109.47425 * 239.99807 * 2 1 3 20 20 H 1.48507 * 109.99962 * 299.99806 * 3 2 1 21 21 H 1.48501 * 110.00228 * 61.31753 * 3 2 1 22 22 H 1.08002 * 122.71398 * 359.96801 * 5 4 2 23 23 H 0.97005 * 119.99929 * 180.02562 * 8 7 6 24 24 H 1.08996 * 113.61569 * 203.66412 * 11 9 8 25 25 H 1.09001 * 113.61541 * 334.56743 * 11 9 8 26 26 H 1.08998 * 109.47062 * 185.00086 * 14 12 11 27 27 H 1.08994 * 109.47455 * 305.00158 * 14 12 11 28 28 H 1.09002 * 113.61523 * 220.02015 * 16 12 11 29 29 H 1.08994 * 113.62052 * 89.11361 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.7621 -2.0025 1.5123 6 7 2.3031 -2.3917 2.6531 7 6 2.9165 -1.4861 3.3499 8 7 3.5417 -1.7086 4.5668 9 6 3.5404 -3.0497 5.1564 10 1 3.4069 -3.8378 4.4154 11 6 4.7137 -3.3009 6.1182 12 6 3.8126 -2.7504 7.2361 13 1 3.8879 -1.6709 7.3660 14 6 3.9323 -3.5186 8.5539 15 9 5.2228 -3.3601 9.0705 16 6 2.6140 -3.1853 6.3765 17 16 2.8417 0.0225 2.5488 18 1 -0.3933 0.4418 0.7650 19 1 1.7924 -0.5138 -0.8899 20 1 1.5616 2.4678 -1.2086 21 1 1.5880 2.4586 1.2242 22 1 1.2299 -2.6776 0.8585 23 1 3.9801 -0.9764 5.0279 24 1 4.9625 -4.3553 6.2374 25 1 5.5858 -2.6795 5.9147 26 1 3.2052 -3.1313 9.2676 27 1 3.7394 -4.5766 8.3766 28 1 1.7910 -2.4707 6.3813 29 1 2.2888 -4.2082 6.5661 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15781662_15704118.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:28:42 Heat of formation + Delta-G solvation = -2.173734 kcal Electronic energy + Delta-G solvation = -15267.224327 eV Core-core repulsion = 12427.193567 eV Total energy + Delta-G solvation = -2840.030761 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 245.063 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.53647 -41.04162 -40.03005 -37.99236 -35.27910 -31.36360 -29.45583 -26.75357 -26.54159 -24.88975 -23.62468 -21.47755 -20.13768 -19.62445 -18.17226 -17.32831 -17.02691 -16.73847 -16.52711 -16.43469 -16.14024 -15.85225 -15.49839 -15.05441 -14.73022 -13.97748 -13.79729 -13.59927 -13.33202 -12.91205 -12.48637 -12.28535 -12.04585 -11.73732 -11.62809 -11.25055 -11.00909 -10.89035 -10.31290 -10.24266 -8.77080 -5.02665 -0.08664 -0.00692 0.64855 1.25232 1.53795 1.87861 1.94668 2.12022 3.35678 3.38351 3.41276 3.57448 3.70016 3.80362 3.91524 4.10726 4.20730 4.40696 4.56625 4.59735 4.69829 4.72677 4.77265 4.82421 5.00740 5.04268 5.08255 5.30011 5.85587 6.11761 6.43476 6.98115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.022 4.022 3 Si 0.722 3.278 4 C -0.305 4.305 5 C 0.105 3.895 6 N -0.576 5.576 7 C 0.317 3.683 8 N -0.669 5.669 9 C 0.134 3.866 10 H 0.093 0.907 11 C -0.134 4.134 12 C -0.141 4.141 13 H 0.101 0.899 14 C 0.063 3.937 15 F -0.237 7.237 16 C -0.136 4.136 17 S 0.113 5.887 18 H 0.386 0.614 19 H 0.136 0.864 20 H -0.275 1.275 21 H -0.266 1.266 22 H 0.180 0.820 23 H 0.423 0.577 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 0.723 1.563 2.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.135 4.135 3 Si 0.624 3.376 4 C -0.428 4.428 5 C -0.046 4.046 6 N -0.303 5.303 7 C -0.054 4.054 8 N -0.309 5.309 9 C 0.026 3.974 10 H 0.111 0.889 11 C -0.172 4.172 12 C -0.160 4.160 13 H 0.119 0.881 14 C 0.009 3.991 15 F -0.218 7.218 16 C -0.175 4.175 17 S 0.363 5.637 18 H 0.235 0.765 19 H 0.153 0.847 20 H -0.201 1.201 21 H -0.191 1.191 22 H 0.197 0.803 23 H 0.263 0.737 24 H 0.123 0.877 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.876 1.555 1.523 2.874 hybrid contribution -1.353 -0.491 0.222 1.456 sum 0.523 1.064 1.745 2.110 Atomic orbital electron populations 1.86593 1.18232 1.80267 1.49985 1.24273 0.82986 1.10392 0.95848 0.94353 0.90765 0.73225 0.79209 1.25630 1.14887 0.98109 1.04142 1.21481 0.97095 0.93794 0.92224 1.66481 1.19600 1.34708 1.09464 1.23908 0.95403 0.93654 0.92409 1.43763 1.58238 1.11770 1.17101 1.21858 0.97245 0.83889 0.94452 0.88874 1.23349 0.96757 1.03257 0.93858 1.23198 0.97999 1.01185 0.93631 0.88050 1.22194 0.79448 1.02364 0.95124 1.92740 1.42933 1.97366 1.88800 1.23404 0.96354 1.03233 0.94537 1.83917 1.54987 1.09845 1.14987 0.76496 0.84654 1.20068 1.19122 0.80320 0.73741 0.87675 0.90340 0.89624 0.89192 0.91296 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.24 12.88 -148.98 -1.92 -3.16 15 2 C -0.02 0.01 2.99 71.24 0.21 0.22 15 3 Si 0.72 -1.03 31.07 68.60 2.13 1.10 15 4 C -0.30 -0.37 5.73 24.58 0.14 -0.23 15 5 C 0.10 0.41 11.24 83.54 0.94 1.35 15 6 N -0.58 -3.45 9.83 -202.02 -1.99 -5.44 15 7 C 0.32 0.71 8.09 179.32 1.45 2.17 15 8 N -0.67 1.37 5.42 -327.90 -1.78 -0.40 15 9 C 0.13 -0.34 4.44 45.52 0.20 -0.14 15 10 H 0.09 0.09 7.66 -2.39 -0.02 0.08 15 11 C -0.13 0.64 7.34 31.12 0.23 0.87 15 12 C -0.14 0.76 3.99 -10.27 -0.04 0.72 15 13 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 15 14 C 0.06 -0.27 7.33 71.98 0.53 0.26 15 15 F -0.24 -0.75 17.30 44.97 0.78 0.03 15 16 C -0.14 0.64 7.43 31.12 0.23 0.87 15 17 S 0.11 -0.05 20.59 -56.49 -1.16 -1.21 15 18 H 0.39 -1.10 8.70 -74.06 -0.64 -1.75 15 19 H 0.14 -0.37 7.96 -2.39 -0.02 -0.39 15 20 H -0.27 -1.32 7.11 99.48 0.71 -0.61 15 21 H -0.27 -0.59 7.11 99.48 0.71 0.12 15 22 H 0.18 0.34 8.06 -2.91 -0.02 0.32 15 23 H 0.42 -2.60 8.83 -92.70 -0.82 -3.41 15 24 H 0.10 -0.58 8.10 -2.39 -0.02 -0.59 15 25 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 15 26 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 15 27 H 0.09 -0.62 8.05 -2.39 -0.02 -0.64 15 28 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 15 29 H 0.11 -0.67 8.03 -2.39 -0.02 -0.69 15 Total: 0.00 -12.03 267.83 -0.29 -12.32 By element: Atomic # 1 Polarization: -9.09 SS G_CDS: -0.24 Total: -9.33 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 3.89 Total: 6.09 kcal Atomic # 7 Polarization: -2.08 SS G_CDS: -3.76 Total: -5.84 kcal Atomic # 8 Polarization: -1.24 SS G_CDS: -1.92 Total: -3.16 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.78 Total: 0.03 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.13 Total: 1.10 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.16 Total: -1.21 kcal Total: -12.03 -0.29 -12.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15781662_15704118.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.151 kcal (2) G-P(sol) polarization free energy of solvation -12.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds