Wall clock time and date at job start Mon Mar 8 2021 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99428 * 2 1 4 4 C 1.38711 * 120.05199 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.02962 * 359.95341 * 4 3 2 6 6 H 1.09007 * 112.84850 * 11.19487 * 5 4 3 7 7 C 1.54046 * 113.69874 * 142.46629 * 5 4 3 8 8 C 1.53779 * 86.98385 * 139.99071 * 7 5 4 9 9 H 1.09004 * 113.61335 * 219.98149 * 8 7 5 10 10 N 1.46499 * 113.61334 * 89.16572 * 8 7 5 11 11 C 1.38405 * 119.99936 * 105.86090 * 10 8 7 12 12 N 1.32494 * 119.22088 * 359.73198 * 11 10 8 13 13 C 1.32272 * 120.74414 * 179.75955 * 12 11 10 14 14 C 1.38606 * 119.19379 * 0.50690 * 13 12 11 15 15 C 1.50706 * 120.72111 * 179.77270 * 14 13 12 16 16 O 1.42895 * 109.47230 * 244.97484 * 15 14 13 17 17 Si 1.86305 * 109.46954 * 4.97241 * 15 14 13 18 18 C 1.38603 * 118.56259 * 359.74450 * 14 13 12 19 19 N 1.32283 * 119.19111 * 0.02562 * 18 14 13 20 20 C 1.53775 * 113.61512 * 240.00379 * 5 4 3 21 21 C 1.38166 * 119.94748 * 180.23268 * 4 3 2 22 22 C 1.38251 * 120.04886 * 359.51394 * 21 4 3 23 23 C 1.38279 * 120.11295 * 0.45984 * 22 21 4 24 24 C 1.38130 * 120.05874 * 359.79349 * 23 22 21 25 25 H 1.08994 * 109.47397 * 299.99850 * 1 2 3 26 26 H 1.09004 * 109.47079 * 60.00267 * 1 2 3 27 27 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 28 28 H 1.09001 * 113.60839 * 25.48835 * 7 5 4 29 29 H 1.09002 * 113.69760 * 254.50996 * 7 5 4 30 30 H 0.96999 * 119.99984 * 285.85932 * 10 8 7 31 31 H 1.07997 * 120.40668 * 180.22914 * 13 12 11 32 32 H 1.08997 * 109.47342 * 124.97018 * 15 14 13 33 33 H 0.96701 * 114.00253 * 180.02562 * 16 15 14 34 34 H 1.48500 * 109.99970 * 178.68026 * 17 15 14 35 35 H 1.48500 * 110.00118 * 300.00069 * 17 15 14 36 36 H 1.08000 * 120.40412 * 180.02562 * 18 14 13 37 37 H 1.09003 * 113.61765 * 105.38191 * 20 5 4 38 38 H 1.09002 * 113.61702 * 334.48220 * 20 5 4 39 39 H 1.07994 * 119.97795 * 179.74705 * 21 4 3 40 40 H 1.08005 * 119.94132 * 180.25884 * 22 21 4 41 41 H 1.07998 * 119.97328 * 179.77012 * 23 22 21 42 42 H 1.07995 * 120.02755 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4310 1.2850 -0.0005 5 6 4.2537 0.0223 -0.0001 6 1 3.6591 -0.8704 -0.1943 7 6 5.5286 0.1137 -0.8599 8 6 6.2399 -0.6692 0.2564 9 1 7.2496 -0.3145 0.4632 10 7 6.1706 -2.1229 0.0894 11 6 7.2894 -2.8264 -0.3214 12 7 8.4137 -2.1689 -0.5646 13 6 9.5022 -2.8115 -0.9542 14 6 9.4533 -4.1871 -1.1170 15 6 10.6716 -4.9532 -1.5644 16 8 10.4260 -5.5314 -2.8478 17 14 12.1276 -3.7960 -1.6729 18 6 8.2599 -4.8430 -0.8590 19 7 7.2093 -4.1408 -0.4678 20 6 5.1806 -0.1085 1.2199 21 6 4.0559 2.5172 0.0043 22 6 3.3017 3.6759 -0.0004 23 6 1.9208 3.6048 -0.0005 24 6 1.2913 2.3753 0.0000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 5.8994 1.1311 -0.9841 29 1 5.4620 -0.4316 -1.8014 30 1 5.3405 -2.5925 0.2669 31 1 10.4167 -2.2705 -1.1473 32 1 10.8883 -5.7433 -0.8454 33 1 11.1694 -6.0408 -3.1986 34 1 13.3425 -4.5453 -2.0824 35 1 11.8448 -2.7141 -2.6501 36 1 8.1886 -5.9143 -0.9758 37 1 4.8333 -0.8330 1.9566 38 1 5.4565 0.8483 1.6634 39 1 5.1343 2.5754 0.0080 40 1 3.7920 4.6383 -0.0008 41 1 1.3338 4.5114 -0.0004 42 1 0.2127 2.3204 0.0004 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15784316_12175864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:14 Heat of formation + Delta-G solvation = 53.195200 kcal Electronic energy + Delta-G solvation = -25084.201880 eV Core-core repulsion = 21418.785923 eV Total energy + Delta-G solvation = -3665.415957 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04865 -41.45960 -39.96441 -38.22491 -37.94725 -35.52669 -34.58637 -32.63616 -31.36327 -31.03783 -28.24263 -26.88392 -26.66966 -26.00935 -25.40208 -23.28344 -22.91321 -22.45834 -20.17727 -19.54520 -18.96756 -18.60948 -18.21387 -17.32588 -16.81717 -16.67313 -16.51844 -16.29127 -16.05532 -15.74843 -15.44262 -15.32499 -15.00397 -14.87831 -14.50443 -14.29340 -14.02713 -13.92823 -13.52642 -13.30747 -13.20402 -13.01913 -12.77528 -12.30401 -12.20690 -12.07059 -11.88330 -11.72916 -11.69623 -11.58374 -11.19356 -10.97846 -10.66361 -9.90513 -9.73871 -9.04977 -8.98534 -5.02055 0.15924 0.26913 0.38195 0.53484 1.22961 1.53948 1.86416 1.90774 2.34857 2.79434 2.85099 3.21454 3.35350 3.53519 3.66946 3.70377 3.75513 3.83268 3.90685 3.91453 4.02473 4.10069 4.16889 4.18320 4.21948 4.24767 4.45138 4.48449 4.51037 4.57165 4.68954 4.72739 4.77393 4.82881 4.88207 5.02378 5.08486 5.11278 5.19258 5.40540 5.43588 5.58827 5.66001 5.85515 5.90600 6.12167 6.39930 6.45772 6.51979 7.39665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.130 3.870 4 C -0.102 4.102 5 C -0.064 4.064 6 H 0.101 0.899 7 C -0.146 4.146 8 C 0.137 3.863 9 H 0.110 0.890 10 N -0.677 5.677 11 C 0.570 3.430 12 N -0.560 5.560 13 C 0.201 3.799 14 C -0.248 4.248 15 C -0.054 4.054 16 O -0.538 6.538 17 Si 0.676 3.324 18 C 0.224 3.776 19 N -0.570 5.570 20 C -0.136 4.136 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.084 4.084 24 C -0.207 4.207 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.415 0.585 31 H 0.167 0.833 32 H 0.078 0.922 33 H 0.381 0.619 34 H -0.257 1.257 35 H -0.252 1.252 36 H 0.169 0.831 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 0.841 2.439 2.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.084 3.916 4 C -0.103 4.103 5 C -0.082 4.082 6 H 0.120 0.880 7 C -0.184 4.184 8 C 0.030 3.970 9 H 0.128 0.872 10 N -0.312 5.312 11 C 0.214 3.786 12 N -0.281 5.281 13 C 0.033 3.967 14 C -0.256 4.256 15 C -0.165 4.165 16 O -0.345 6.345 17 Si 0.577 3.423 18 C 0.056 3.944 19 N -0.291 5.291 20 C -0.174 4.174 21 C -0.098 4.098 22 C -0.173 4.173 23 C -0.102 4.102 24 C -0.226 4.226 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.253 0.747 31 H 0.183 0.817 32 H 0.096 0.904 33 H 0.229 0.771 34 H -0.182 1.182 35 H -0.177 1.177 36 H 0.186 0.814 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.111 2.014 2.341 3.090 hybrid contribution -0.022 -1.408 -1.143 1.814 sum 0.090 0.605 1.198 1.346 Atomic orbital electron populations 1.23079 0.78240 1.04137 1.01387 1.86059 1.21399 1.26781 1.88595 1.18877 0.91850 0.84277 0.96568 1.19051 0.90120 0.95389 1.05732 1.21460 0.94052 0.95824 0.96910 0.88042 1.23668 0.95264 1.01260 0.98254 1.21829 1.00494 0.78400 0.96231 0.87240 1.43832 1.09966 1.06200 1.71202 1.19340 0.86590 0.85241 0.87434 1.67933 0.99341 1.40105 1.20771 1.22770 0.95441 0.90416 0.88057 1.20602 0.98048 0.95814 1.11090 1.24405 1.02863 1.02463 0.86764 1.86595 1.43117 1.71053 1.33756 0.95252 0.75796 0.80646 0.90575 1.22793 0.85802 1.00151 0.85679 1.67970 1.32649 1.06630 1.21876 1.23457 0.95380 1.02140 0.96463 1.20876 1.00048 0.90978 0.97879 1.21079 0.93927 0.98505 1.03755 1.20971 0.94801 0.97017 0.97431 1.21261 1.00106 0.92432 1.08788 0.92583 0.92629 0.88097 0.88671 0.90953 0.74688 0.81672 0.90425 0.77109 1.18228 1.17685 0.81423 0.90545 0.88256 0.85186 0.85767 0.85792 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.97 16 2 O -0.32 -0.67 9.43 -19.44 -0.18 -0.86 16 3 C 0.13 0.31 6.66 -39.22 -0.26 0.05 16 4 C -0.10 -0.17 5.30 -104.47 -0.55 -0.72 16 5 C -0.06 -0.04 3.76 -90.82 -0.34 -0.38 16 6 H 0.10 0.15 7.33 -51.92 -0.38 -0.23 16 7 C -0.15 -0.05 7.27 -25.78 -0.19 -0.24 16 8 C 0.14 0.04 4.30 -67.12 -0.29 -0.25 16 9 H 0.11 0.08 7.41 -51.93 -0.38 -0.30 16 10 N -0.68 -1.06 5.41 -55.01 -0.30 -1.36 16 11 C 0.57 2.04 8.43 -322.81 -2.72 -0.68 16 12 N -0.56 -1.85 9.15 -13.93 -0.13 -1.97 16 13 C 0.20 0.33 9.92 -17.23 -0.17 0.16 16 14 C -0.25 -0.33 5.40 -104.35 -0.56 -0.89 16 15 C -0.05 0.04 2.82 36.01 0.10 0.14 16 16 O -0.54 -0.28 12.82 -35.23 -0.45 -0.73 16 17 Si 0.68 -1.08 29.92 -169.99 -5.09 -6.16 16 18 C 0.22 0.49 10.99 -17.22 -0.19 0.30 16 19 N -0.57 -2.19 10.46 -13.93 -0.15 -2.34 16 20 C -0.14 0.08 7.29 -25.92 -0.19 -0.11 16 21 C -0.08 -0.05 8.60 -39.60 -0.34 -0.39 16 22 C -0.15 -0.10 10.04 -39.56 -0.40 -0.49 16 23 C -0.08 -0.07 10.04 -39.61 -0.40 -0.47 16 24 C -0.21 -0.29 9.04 -39.43 -0.36 -0.65 16 25 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 26 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 27 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 28 H 0.09 -0.05 6.34 -51.93 -0.33 -0.38 16 29 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.42 0.32 8.82 -40.82 -0.36 -0.04 16 31 H 0.17 -0.13 5.04 -52.49 -0.26 -0.39 16 32 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 33 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 34 H -0.26 -0.11 7.11 56.52 0.40 0.29 16 35 H -0.25 -0.37 7.06 56.52 0.40 0.03 16 36 H 0.17 0.01 8.06 -52.49 -0.42 -0.42 16 37 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 38 H 0.10 -0.13 7.71 -51.93 -0.40 -0.53 16 39 H 0.13 -0.16 6.68 -52.49 -0.35 -0.51 16 40 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 41 H 0.12 -0.12 8.06 -52.49 -0.42 -0.55 16 42 H 0.13 -0.04 6.30 -52.49 -0.33 -0.37 16 LS Contribution 347.29 15.07 5.23 5.23 Total: 0.00 -7.49 347.29 -12.27 -19.76 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: -5.35 Total: -7.90 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -5.86 Total: -3.66 kcal Atomic # 7 Polarization: -5.11 SS G_CDS: -0.57 Total: -5.68 kcal Atomic # 8 Polarization: -0.95 SS G_CDS: -0.64 Total: -1.59 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.09 Total: -6.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -7.49 -12.27 -19.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15784316_12175864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.954 kcal (2) G-P(sol) polarization free energy of solvation -7.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds