Wall clock time and date at job start Mon Mar 8 2021 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99428 * 2 1 4 4 C 1.38711 * 120.05199 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.02962 * 359.95341 * 4 3 2 6 6 H 1.09007 * 112.84850 * 11.19487 * 5 4 3 7 7 C 1.54046 * 113.69874 * 142.46629 * 5 4 3 8 8 C 1.53779 * 86.98385 * 139.99071 * 7 5 4 9 9 H 1.09004 * 113.61335 * 219.98149 * 8 7 5 10 10 N 1.46499 * 113.61334 * 89.16572 * 8 7 5 11 11 C 1.38405 * 119.99936 * 105.86090 * 10 8 7 12 12 N 1.32494 * 119.22088 * 359.73198 * 11 10 8 13 13 C 1.32272 * 120.74414 * 179.75955 * 12 11 10 14 14 C 1.38606 * 119.19379 * 0.50690 * 13 12 11 15 15 C 1.50706 * 120.72111 * 179.77270 * 14 13 12 16 16 O 1.42895 * 109.47230 * 244.97484 * 15 14 13 17 17 Si 1.86305 * 109.46954 * 4.97241 * 15 14 13 18 18 C 1.38603 * 118.56259 * 359.74450 * 14 13 12 19 19 N 1.32283 * 119.19111 * 0.02562 * 18 14 13 20 20 C 1.53775 * 113.61512 * 240.00379 * 5 4 3 21 21 C 1.38166 * 119.94748 * 180.23268 * 4 3 2 22 22 C 1.38251 * 120.04886 * 359.51394 * 21 4 3 23 23 C 1.38279 * 120.11295 * 0.45984 * 22 21 4 24 24 C 1.38130 * 120.05874 * 359.79349 * 23 22 21 25 25 H 1.08994 * 109.47397 * 299.99850 * 1 2 3 26 26 H 1.09004 * 109.47079 * 60.00267 * 1 2 3 27 27 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 28 28 H 1.09001 * 113.60839 * 25.48835 * 7 5 4 29 29 H 1.09002 * 113.69760 * 254.50996 * 7 5 4 30 30 H 0.96999 * 119.99984 * 285.85932 * 10 8 7 31 31 H 1.07997 * 120.40668 * 180.22914 * 13 12 11 32 32 H 1.08997 * 109.47342 * 124.97018 * 15 14 13 33 33 H 0.96701 * 114.00253 * 180.02562 * 16 15 14 34 34 H 1.48500 * 109.99970 * 178.68026 * 17 15 14 35 35 H 1.48500 * 110.00118 * 300.00069 * 17 15 14 36 36 H 1.08000 * 120.40412 * 180.02562 * 18 14 13 37 37 H 1.09003 * 113.61765 * 105.38191 * 20 5 4 38 38 H 1.09002 * 113.61702 * 334.48220 * 20 5 4 39 39 H 1.07994 * 119.97795 * 179.74705 * 21 4 3 40 40 H 1.08005 * 119.94132 * 180.25884 * 22 21 4 41 41 H 1.07998 * 119.97328 * 179.77012 * 23 22 21 42 42 H 1.07995 * 120.02755 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4310 1.2850 -0.0005 5 6 4.2537 0.0223 -0.0001 6 1 3.6591 -0.8704 -0.1943 7 6 5.5286 0.1137 -0.8599 8 6 6.2399 -0.6692 0.2564 9 1 7.2496 -0.3145 0.4632 10 7 6.1706 -2.1229 0.0894 11 6 7.2894 -2.8264 -0.3214 12 7 8.4137 -2.1689 -0.5646 13 6 9.5022 -2.8115 -0.9542 14 6 9.4533 -4.1871 -1.1170 15 6 10.6716 -4.9532 -1.5644 16 8 10.4260 -5.5314 -2.8478 17 14 12.1276 -3.7960 -1.6729 18 6 8.2599 -4.8430 -0.8590 19 7 7.2093 -4.1408 -0.4678 20 6 5.1806 -0.1085 1.2199 21 6 4.0559 2.5172 0.0043 22 6 3.3017 3.6759 -0.0004 23 6 1.9208 3.6048 -0.0005 24 6 1.2913 2.3753 0.0000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 5.8994 1.1311 -0.9841 29 1 5.4620 -0.4316 -1.8014 30 1 5.3405 -2.5925 0.2669 31 1 10.4167 -2.2705 -1.1473 32 1 10.8883 -5.7433 -0.8454 33 1 11.1694 -6.0408 -3.1986 34 1 13.3425 -4.5453 -2.0824 35 1 11.8448 -2.7141 -2.6501 36 1 8.1886 -5.9143 -0.9758 37 1 4.8333 -0.8330 1.9566 38 1 5.4565 0.8483 1.6634 39 1 5.1343 2.5754 0.0080 40 1 3.7920 4.6383 -0.0008 41 1 1.3338 4.5114 -0.0004 42 1 0.2127 2.3204 0.0004 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15784316_12175864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:13 Heat of formation + Delta-G solvation = 57.491555 kcal Electronic energy + Delta-G solvation = -25084.015577 eV Core-core repulsion = 21418.785923 eV Total energy + Delta-G solvation = -3665.229653 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16360 -41.50128 -40.00772 -38.23969 -37.94037 -35.60439 -34.74067 -32.69215 -31.41213 -31.05328 -28.19347 -26.92791 -26.69348 -26.07887 -25.48075 -23.32779 -22.96180 -22.50464 -20.23157 -19.63401 -19.00550 -18.59951 -18.28724 -17.35865 -16.83900 -16.68711 -16.55177 -16.34339 -16.17175 -15.81852 -15.43669 -15.32241 -15.04105 -14.90621 -14.57444 -14.32559 -14.05658 -13.92760 -13.52759 -13.32870 -13.22706 -12.97532 -12.75968 -12.30094 -12.27978 -12.06485 -11.93802 -11.90950 -11.74533 -11.61803 -11.23648 -11.03667 -10.64528 -10.02226 -9.77085 -9.12632 -9.06315 -4.90275 0.03518 0.13323 0.34718 0.48576 1.32085 1.62008 1.77504 1.97597 2.37190 2.72838 2.76848 3.12807 3.41829 3.50176 3.61488 3.66018 3.71061 3.77365 3.91089 3.92039 4.01158 4.11774 4.17204 4.19862 4.30394 4.33195 4.45630 4.49421 4.57499 4.65261 4.68260 4.71590 4.76669 4.79708 4.85408 4.99199 5.01924 5.10689 5.15327 5.35364 5.41097 5.56147 5.62189 5.79531 5.86175 6.03179 6.37952 6.43416 6.64700 7.25131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.108 3.892 4 C -0.116 4.116 5 C -0.061 4.061 6 H 0.087 0.913 7 C -0.140 4.140 8 C 0.139 3.861 9 H 0.108 0.892 10 N -0.675 5.675 11 C 0.554 3.446 12 N -0.573 5.573 13 C 0.192 3.808 14 C -0.248 4.248 15 C -0.060 4.060 16 O -0.560 6.560 17 Si 0.756 3.244 18 C 0.212 3.788 19 N -0.591 5.591 20 C -0.124 4.124 21 C -0.084 4.084 22 C -0.161 4.161 23 C -0.094 4.094 24 C -0.218 4.218 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.416 0.584 31 H 0.185 0.815 32 H 0.103 0.897 33 H 0.397 0.603 34 H -0.281 1.281 35 H -0.296 1.296 36 H 0.185 0.815 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 1.151 2.883 3.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.063 3.937 4 C -0.117 4.117 5 C -0.079 4.079 6 H 0.106 0.894 7 C -0.179 4.179 8 C 0.033 3.967 9 H 0.126 0.874 10 N -0.311 5.311 11 C 0.198 3.802 12 N -0.296 5.296 13 C 0.025 3.975 14 C -0.256 4.256 15 C -0.170 4.170 16 O -0.371 6.371 17 Si 0.661 3.339 18 C 0.045 3.955 19 N -0.314 5.314 20 C -0.162 4.162 21 C -0.102 4.102 22 C -0.179 4.179 23 C -0.112 4.112 24 C -0.236 4.236 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.254 0.746 31 H 0.202 0.798 32 H 0.121 0.879 33 H 0.248 0.752 34 H -0.208 1.208 35 H -0.223 1.223 36 H 0.202 0.798 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.761 2.303 2.798 3.702 hybrid contribution -0.223 -1.516 -1.344 2.038 sum 0.537 0.786 1.454 1.738 Atomic orbital electron populations 1.23264 0.76979 1.05210 1.01963 1.86030 1.22867 1.27076 1.88772 1.19156 0.92441 0.84668 0.97430 1.19269 0.90231 0.96072 1.06126 1.21360 0.93876 0.95078 0.97600 0.89449 1.23647 0.95280 1.01638 0.97326 1.21837 1.00553 0.77792 0.96477 0.87419 1.43911 1.09648 1.06619 1.70882 1.19581 0.87167 0.85491 0.87981 1.67955 0.99716 1.40504 1.21419 1.23167 0.95734 0.90957 0.87667 1.20828 0.98567 0.95834 1.10368 1.24600 1.01971 1.03438 0.87012 1.86546 1.44621 1.71568 1.34317 0.94333 0.73420 0.77479 0.88654 1.23175 0.85885 1.01001 0.85467 1.67984 1.33603 1.06959 1.22805 1.23405 0.94358 1.02543 0.95893 1.21120 1.01029 0.90630 0.97393 1.21383 0.94057 0.99312 1.03198 1.21269 0.95308 0.97465 0.97129 1.21481 1.00841 0.92465 1.08826 0.91876 0.92141 0.86846 0.87471 0.92768 0.74558 0.79842 0.87901 0.75222 1.20791 1.22328 0.79797 0.90596 0.87057 0.83459 0.84001 0.84138 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.33 -1.85 9.43 -92.48 -0.87 -2.72 16 3 C 0.11 0.62 6.66 22.50 0.15 0.77 16 4 C -0.12 -0.46 5.30 -19.77 -0.10 -0.57 16 5 C -0.06 -0.13 3.76 -10.92 -0.04 -0.17 16 6 H 0.09 0.43 7.33 -2.38 -0.02 0.41 16 7 C -0.14 -0.22 7.27 31.21 0.23 0.00 16 8 C 0.14 0.18 4.30 45.52 0.20 0.38 16 9 H 0.11 0.20 7.41 -2.38 -0.02 0.19 16 10 N -0.68 -2.99 5.41 -327.94 -1.77 -4.76 16 11 C 0.55 4.57 8.43 261.49 2.20 6.78 16 12 N -0.57 -4.22 9.15 -197.99 -1.81 -6.03 16 13 C 0.19 0.69 9.92 84.71 0.84 1.53 16 14 C -0.25 -0.64 5.40 -19.69 -0.11 -0.75 16 15 C -0.06 0.15 2.82 71.24 0.20 0.35 16 16 O -0.56 -0.24 12.82 -148.98 -1.91 -2.15 16 17 Si 0.76 -2.82 29.92 68.60 2.05 -0.77 16 18 C 0.21 1.01 10.99 84.71 0.93 1.94 16 19 N -0.59 -5.16 10.46 -197.99 -2.07 -7.23 16 20 C -0.12 0.10 7.29 31.12 0.23 0.32 16 21 C -0.08 -0.09 8.60 22.26 0.19 0.10 16 22 C -0.16 -0.12 10.04 22.28 0.22 0.11 16 23 C -0.09 -0.14 10.04 22.25 0.22 0.09 16 24 C -0.22 -0.70 9.04 22.37 0.20 -0.49 16 25 H 0.06 -0.19 7.66 -2.39 -0.02 -0.21 16 26 H 0.06 -0.16 7.66 -2.39 -0.02 -0.18 16 27 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.11 -0.12 6.34 -2.39 -0.02 -0.13 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.42 1.32 8.82 -92.71 -0.82 0.51 16 31 H 0.19 -0.29 5.04 -2.91 -0.01 -0.30 16 32 H 0.10 -0.75 7.96 -2.39 -0.02 -0.77 16 33 H 0.40 -3.05 8.74 -74.06 -0.65 -3.70 16 34 H -0.28 -0.08 7.11 99.48 0.71 0.63 16 35 H -0.30 -1.04 7.06 99.48 0.70 -0.34 16 36 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 37 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.11 -0.34 7.71 -2.39 -0.02 -0.35 16 39 H 0.15 -0.49 6.68 -2.91 -0.02 -0.51 16 40 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 41 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 42 H 0.14 -0.04 6.30 -2.91 -0.02 -0.06 16 Total: 0.00 -18.19 347.29 -0.07 -18.26 By element: Atomic # 1 Polarization: -5.68 SS G_CDS: -0.36 Total: -6.05 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.68 Total: 11.45 kcal Atomic # 7 Polarization: -12.36 SS G_CDS: -5.66 Total: -18.02 kcal Atomic # 8 Polarization: -2.10 SS G_CDS: -2.78 Total: -4.88 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.05 Total: -0.77 kcal Total: -18.19 -0.07 -18.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15784316_12175864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.751 kcal (2) G-P(sol) polarization free energy of solvation -18.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds