Wall clock time and date at job start Mon Mar 8 2021 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99932 * 2 1 4 4 C 1.38711 * 120.05133 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.03040 * 359.97438 * 4 3 2 6 6 H 1.08994 * 112.85147 * 348.80348 * 5 4 3 7 7 C 1.53780 * 113.61357 * 120.00063 * 5 4 3 8 8 C 1.53785 * 87.08199 * 140.06189 * 7 5 4 9 9 H 1.08997 * 113.61733 * 219.92797 * 8 7 5 10 10 N 1.46504 * 113.61237 * 89.11505 * 8 7 5 11 11 C 1.39001 * 120.00049 * 156.52915 * 10 8 7 12 12 N 1.32401 * 119.70427 * 180.02562 * 11 10 8 13 13 C 1.31972 * 121.61736 * 179.73321 * 12 11 10 14 14 C 1.38017 * 120.85998 * 0.53411 * 13 12 11 15 15 C 1.50696 * 120.33800 * 179.72545 * 14 13 12 16 16 O 1.42903 * 109.47131 * 119.72264 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 359.72805 * 15 14 13 18 18 C 1.38885 * 119.32808 * 359.45648 * 14 13 12 19 19 C 1.38298 * 118.50341 * 0.27289 * 18 14 13 20 20 C 1.53778 * 87.17109 * 334.52576 * 8 7 5 21 21 C 1.38172 * 119.94027 * 180.27216 * 4 3 2 22 22 C 1.38237 * 120.05623 * 359.49667 * 21 4 3 23 23 C 1.38287 * 120.11174 * 0.50363 * 22 21 4 24 24 C 1.38125 * 120.05528 * 359.74810 * 23 22 21 25 25 H 1.09003 * 109.46774 * 60.00208 * 1 2 3 26 26 H 1.08999 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47142 * 300.00438 * 1 2 3 28 28 H 1.09000 * 113.62084 * 25.51485 * 7 5 4 29 29 H 1.09003 * 113.61503 * 254.61075 * 7 5 4 30 30 H 0.97007 * 119.99734 * 336.53051 * 10 8 7 31 31 H 1.07999 * 119.56964 * 180.28706 * 13 12 11 32 32 H 1.08999 * 109.47358 * 239.72624 * 15 14 13 33 33 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 34 34 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 35 35 H 1.48492 * 109.99800 * 301.31995 * 17 15 14 36 36 H 1.08004 * 120.75074 * 180.29542 * 18 14 13 37 37 H 1.08005 * 120.44711 * 180.02562 * 19 18 14 38 38 H 1.09003 * 113.61387 * 140.02281 * 20 8 7 39 39 H 1.08998 * 113.60951 * 270.92154 * 20 8 7 40 40 H 1.08001 * 119.97021 * 179.74688 * 21 4 3 41 41 H 1.08004 * 119.94719 * 180.25537 * 22 21 4 42 42 H 1.07998 * 119.97484 * 179.72445 * 23 22 21 43 43 H 1.08000 * 120.03141 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2537 0.0221 0.0017 6 1 3.6591 -0.8702 0.1971 7 6 5.1808 -0.1103 -1.2181 8 6 6.2400 -0.6697 -0.2536 9 1 7.2497 -0.3155 -0.4609 10 7 6.1706 -2.1233 -0.0849 11 6 7.2942 -2.8294 0.3287 12 7 7.2250 -4.1431 0.4788 13 6 8.2697 -4.8513 0.8646 14 6 9.4771 -4.2409 1.1375 15 6 10.6607 -5.0603 1.5831 16 8 11.7279 -4.9046 0.6456 17 14 10.1731 -6.8560 1.6762 18 6 9.5918 -2.8645 0.9918 19 6 8.4816 -2.1495 0.5809 20 6 5.5286 0.1146 0.8615 21 6 4.0560 2.5171 0.0062 22 6 3.3020 3.6757 0.0009 23 6 1.9210 3.6048 0.0003 24 6 1.2915 2.3753 -0.0001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 5.4567 0.8459 -1.6627 29 1 4.8335 -0.8358 -1.9538 30 1 5.3404 -2.5930 -0.2618 31 1 8.1775 -5.9220 0.9719 32 1 10.9880 -4.7212 2.5659 33 1 11.5070 -5.1872 -0.2524 34 1 11.3320 -7.6749 2.1140 35 1 9.0429 -7.0268 2.6240 36 1 10.5270 -2.3638 1.1945 37 1 8.5357 -1.0780 0.4570 38 1 5.4619 -0.4295 1.8037 39 1 5.8995 1.1321 0.9845 40 1 5.1344 2.5752 0.0108 41 1 3.7923 4.6381 0.0012 42 1 1.3341 4.5114 0.0006 43 1 0.2129 2.3203 -0.0010 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15784316_13915762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:17 Heat of formation + Delta-G solvation = 38.887348 kcal Electronic energy + Delta-G solvation = -24941.046315 eV Core-core repulsion = 21340.435833 eV Total energy + Delta-G solvation = -3600.610481 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76765 -41.23807 -39.94364 -38.22465 -37.77033 -35.33708 -33.40925 -32.18534 -31.05978 -30.84002 -28.19493 -26.75795 -26.68951 -25.70114 -24.72933 -23.25572 -22.82761 -22.23543 -20.05632 -19.26384 -18.69645 -18.40580 -17.41678 -17.29048 -16.78452 -16.69095 -16.47814 -16.13116 -15.98884 -15.68848 -15.34864 -15.30671 -14.89388 -14.75698 -14.38131 -14.27409 -14.01351 -13.98442 -13.46933 -13.32752 -13.21837 -12.97075 -12.74790 -12.36559 -12.28804 -12.10189 -12.05698 -11.84655 -11.64793 -11.17588 -11.02295 -10.73464 -10.40252 -10.36273 -9.77127 -9.08667 -8.68356 -4.98592 0.23484 0.34417 0.41365 0.48208 1.35044 1.64135 1.97320 2.06853 2.36712 2.75848 2.83559 3.47316 3.56182 3.62885 3.66879 3.71112 3.80094 3.91702 3.98534 4.01217 4.09979 4.10542 4.20091 4.28426 4.32039 4.38362 4.44701 4.49692 4.52238 4.61091 4.67234 4.71683 4.77164 4.80400 4.84567 4.98131 5.03789 5.04762 5.10764 5.22046 5.34801 5.41053 5.53805 5.59061 5.63313 5.85830 6.06698 6.42809 6.53328 6.81072 7.14953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.107 3.893 4 C -0.116 4.116 5 C -0.063 4.063 6 H 0.084 0.916 7 C -0.126 4.126 8 C 0.133 3.867 9 H 0.114 0.886 10 N -0.704 5.704 11 C 0.397 3.603 12 N -0.567 5.567 13 C 0.145 3.855 14 C -0.237 4.237 15 C -0.052 4.052 16 O -0.556 6.556 17 Si 0.764 3.236 18 C -0.012 4.012 19 C -0.239 4.239 20 C -0.143 4.143 21 C -0.083 4.083 22 C -0.162 4.162 23 C -0.095 4.095 24 C -0.218 4.218 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.404 0.596 31 H 0.166 0.834 32 H 0.107 0.893 33 H 0.394 0.606 34 H -0.296 1.296 35 H -0.288 1.288 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.151 0.849 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 3.428 -2.841 4.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.062 3.938 4 C -0.117 4.117 5 C -0.081 4.081 6 H 0.102 0.898 7 C -0.164 4.164 8 C 0.027 3.973 9 H 0.131 0.869 10 N -0.334 5.334 11 C 0.161 3.839 12 N -0.285 5.285 13 C -0.012 4.012 14 C -0.242 4.242 15 C -0.164 4.164 16 O -0.363 6.363 17 Si 0.671 3.329 18 C -0.038 4.038 19 C -0.264 4.264 20 C -0.182 4.182 21 C -0.101 4.101 22 C -0.180 4.180 23 C -0.113 4.113 24 C -0.237 4.237 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.240 0.760 31 H 0.183 0.817 32 H 0.125 0.875 33 H 0.244 0.756 34 H -0.224 1.224 35 H -0.216 1.216 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.129 0.871 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.884 2.544 -2.018 3.754 hybrid contribution -0.250 0.759 0.629 1.017 sum -2.134 3.303 -1.389 4.171 Atomic orbital electron populations 1.23259 0.77013 1.05189 1.01938 1.86030 1.22839 1.27130 1.88782 1.19184 0.92562 0.84612 0.97484 1.19301 0.90179 0.96199 1.06025 1.21342 0.94054 0.94847 0.97863 0.89771 1.23396 0.94643 1.02478 0.95894 1.21930 1.00484 0.78419 0.96514 0.86863 1.44293 1.10795 1.06029 1.72314 1.18617 0.87597 0.88072 0.89600 1.67129 1.33055 1.06794 1.21483 1.22439 0.87261 0.99456 0.92068 1.21046 0.97185 0.96056 1.09934 1.24817 0.87374 1.09443 0.94745 1.86450 1.37461 1.88949 1.23489 0.93849 0.76606 0.73994 0.88427 1.21403 0.98288 0.92956 0.91106 1.21698 0.92613 1.02251 1.09830 1.23716 0.95202 1.01799 0.97506 1.21129 1.01109 0.90502 0.97369 1.21389 0.94007 0.99399 1.03173 1.21267 0.95398 0.97408 0.97194 1.21480 1.00819 0.92531 1.08870 0.91931 0.86871 0.92139 0.87055 0.91005 0.75985 0.81722 0.87521 0.75602 1.22353 1.21565 0.83549 0.82958 0.92229 0.87139 0.83161 0.83987 0.84247 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.08 16 2 O -0.33 -1.66 9.43 -92.48 -0.87 -2.53 16 3 C 0.11 0.51 6.66 22.50 0.15 0.66 16 4 C -0.12 -0.29 5.30 -19.77 -0.10 -0.40 16 5 C -0.06 -0.01 3.76 -10.92 -0.04 -0.05 16 6 H 0.08 0.32 7.32 -2.39 -0.02 0.30 16 7 C -0.13 0.40 7.29 31.12 0.23 0.62 16 8 C 0.13 -0.43 4.07 45.52 0.19 -0.24 16 9 H 0.11 -0.69 6.17 -2.39 -0.01 -0.70 16 10 N -0.70 -0.76 5.44 -322.04 -1.75 -2.51 16 11 C 0.40 1.73 7.65 133.06 1.02 2.75 16 12 N -0.57 -3.96 10.39 -193.27 -2.01 -5.97 16 13 C 0.14 0.50 9.84 84.62 0.83 1.34 16 14 C -0.24 -0.41 5.40 -19.76 -0.11 -0.52 16 15 C -0.05 0.00 2.84 71.23 0.20 0.20 16 16 O -0.56 -0.14 12.78 -148.98 -1.90 -2.04 16 17 Si 0.76 -0.75 29.82 68.60 2.05 1.29 16 18 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 19 C -0.24 -0.32 9.28 22.50 0.21 -0.11 16 20 C -0.14 0.33 7.27 31.21 0.23 0.56 16 21 C -0.08 0.06 8.63 22.25 0.19 0.25 16 22 C -0.16 0.08 10.04 22.28 0.22 0.30 16 23 C -0.09 -0.06 10.04 22.25 0.22 0.16 16 24 C -0.22 -0.55 9.04 22.36 0.20 -0.35 16 25 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 26 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.06 -0.18 7.66 -2.39 -0.02 -0.20 16 28 H 0.11 -0.62 7.73 -2.39 -0.02 -0.63 16 29 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.40 0.71 8.83 -92.70 -0.82 -0.11 16 31 H 0.17 -0.08 4.88 -2.91 -0.01 -0.10 16 32 H 0.11 0.10 7.96 -2.39 -0.02 0.08 16 33 H 0.39 -2.89 8.70 -74.06 -0.64 -3.54 16 34 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 35 H -0.29 -1.24 7.11 99.48 0.71 -0.54 16 36 H 0.15 -0.19 8.06 -2.91 -0.02 -0.22 16 37 H 0.15 -0.48 6.06 -2.91 -0.02 -0.50 16 38 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.11 -0.62 6.32 -2.39 -0.02 -0.63 16 40 H 0.15 -0.88 6.65 -2.91 -0.02 -0.90 16 41 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 42 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 43 H 0.14 -0.10 6.30 -2.91 -0.02 -0.12 16 Total: 0.00 -16.35 349.60 0.11 -16.24 By element: Atomic # 1 Polarization: -10.56 SS G_CDS: -0.37 Total: -10.93 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.97 Total: 6.45 kcal Atomic # 7 Polarization: -4.72 SS G_CDS: -3.76 Total: -8.48 kcal Atomic # 8 Polarization: -1.80 SS G_CDS: -2.78 Total: -4.57 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.05 Total: 1.29 kcal Total: -16.35 0.11 -16.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15784316_13915762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.125 kcal (2) G-P(sol) polarization free energy of solvation -16.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds