Wall clock time and date at job start Mon Mar 8 2021 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 116.99987 * 2 1 4 4 C 1.38715 * 120.05569 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.02708 * 0.02562 * 4 3 2 6 6 H 1.08994 * 112.84950 * 348.52849 * 5 4 3 7 7 C 1.53784 * 113.61244 * 119.72302 * 5 4 3 8 8 C 1.53777 * 87.08174 * 139.98254 * 7 5 4 9 9 H 1.08999 * 113.61371 * 219.93699 * 8 7 5 10 10 N 1.46493 * 113.61598 * 89.11010 * 8 7 5 11 11 C 1.38614 * 119.99957 * 156.52941 * 10 8 7 12 12 N 1.29691 * 124.94862 * 359.97438 * 11 10 8 13 13 C 1.32120 * 116.86697 * 180.02562 * 12 11 10 14 14 C 1.33329 * 114.57921 * 0.02562 * 13 12 11 15 15 C 1.50696 * 125.94973 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.47131 * 299.99393 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 179.97438 * 15 14 13 18 18 S 1.70964 * 124.95354 * 180.33562 * 11 10 8 19 19 C 1.53789 * 87.17114 * 334.52479 * 8 7 5 20 20 C 1.38166 * 119.94237 * 179.72346 * 4 3 2 21 21 C 1.38240 * 120.05637 * 0.22977 * 20 4 3 22 22 C 1.38283 * 120.11189 * 0.02733 * 21 20 4 23 23 C 1.38116 * 120.05653 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47330 * 60.00090 * 1 2 3 25 25 H 1.09001 * 109.47126 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46942 * 299.99729 * 1 2 3 27 27 H 1.08996 * 113.61388 * 25.42727 * 7 5 4 28 28 H 1.09009 * 113.60855 * 254.52973 * 7 5 4 29 29 H 0.97002 * 120.00423 * 336.53749 * 10 8 7 30 30 H 1.08002 * 122.70976 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.47358 * 59.99752 * 15 14 13 32 32 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 33 33 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 34 34 H 1.48492 * 109.99800 * 301.31995 * 17 15 14 35 35 H 1.08997 * 113.61678 * 140.02615 * 19 8 7 36 36 H 1.09002 * 113.61195 * 270.92689 * 19 8 7 37 37 H 1.07999 * 119.97161 * 180.25921 * 20 4 3 38 38 H 1.08003 * 119.94204 * 180.02562 * 21 20 4 39 39 H 1.08005 * 119.96872 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.02794 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2537 0.0221 0.0005 6 1 3.6599 -0.8699 0.1999 7 6 5.1758 -0.1124 -1.2228 8 6 6.2396 -0.6681 -0.2615 9 1 7.2481 -0.3132 -0.4739 10 7 6.1726 -2.1213 -0.0886 11 6 7.2956 -2.8231 0.3209 12 7 8.4511 -2.2924 0.5764 13 6 9.4143 -3.1131 0.9561 14 6 9.0556 -4.3955 1.0237 15 6 9.9456 -5.5430 1.4263 16 8 11.0539 -5.6242 0.5279 17 14 8.9762 -7.1327 1.3627 18 16 7.3619 -4.5154 0.5544 19 6 5.5321 0.1183 0.8547 20 6 4.0559 2.5171 -0.0052 21 6 3.3019 3.6757 -0.0068 22 6 1.9209 3.6047 -0.0019 23 6 1.2915 2.3753 0.0050 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 5.4486 0.8429 -1.6711 28 1 4.8262 -0.8403 -1.9552 29 1 5.3424 -2.5925 -0.2608 30 1 10.4116 -2.7728 1.1926 31 1 10.3110 -5.3810 2.4404 32 1 10.8026 -5.7680 -0.3948 33 1 9.8428 -8.2722 1.7570 34 1 7.8031 -7.0487 2.2692 35 1 5.4700 -0.4233 1.7986 36 1 5.9023 1.1366 0.9735 37 1 5.1344 2.5752 -0.0091 38 1 3.7922 4.6380 -0.0117 39 1 1.3340 4.5114 -0.0027 40 1 0.2128 2.3204 0.0092 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15784316_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:21 Heat of formation + Delta-G solvation = 41.030316 kcal Electronic energy + Delta-G solvation = -23477.673731 eV Core-core repulsion = 19966.308422 eV Total energy + Delta-G solvation = -3511.365309 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66007 -40.72212 -39.83966 -38.21394 -37.75639 -35.24628 -32.10798 -31.07951 -30.96111 -28.29169 -26.86772 -26.68429 -26.05376 -24.47725 -23.17648 -22.70882 -21.18144 -20.07515 -19.45552 -19.06636 -18.03550 -17.42164 -17.05610 -16.72349 -16.62557 -16.49259 -16.22791 -15.77650 -15.53154 -15.39836 -15.06602 -14.99156 -14.76808 -14.34097 -14.07975 -13.94299 -13.55118 -13.26055 -13.07798 -12.88744 -12.76096 -12.33782 -12.31297 -12.11145 -11.99981 -11.88459 -11.69628 -11.21563 -10.99036 -10.74041 -10.19318 -10.10491 -9.77739 -9.07534 -8.69566 -5.10588 0.01716 0.06802 0.34246 0.49523 0.73694 1.29474 1.61493 1.93554 2.08415 2.14394 2.29973 2.75791 3.42865 3.47563 3.62148 3.68874 3.74201 3.86474 3.95948 3.98212 4.05763 4.14212 4.17658 4.20071 4.40685 4.44266 4.51603 4.52781 4.62986 4.67913 4.72769 4.76697 4.80223 4.94299 5.01374 5.06874 5.10542 5.29886 5.39341 5.54459 5.61805 5.81383 5.92650 6.09910 6.41133 6.55729 7.06206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.129 3.871 4 C -0.103 4.103 5 C -0.064 4.064 6 H 0.101 0.899 7 C -0.136 4.136 8 C 0.137 3.863 9 H 0.107 0.893 10 N -0.674 5.674 11 C 0.330 3.670 12 N -0.550 5.550 13 C 0.120 3.880 14 C -0.308 4.308 15 C -0.010 4.010 16 O -0.537 6.537 17 Si 0.655 3.345 18 S 0.086 5.914 19 C -0.145 4.145 20 C -0.080 4.080 21 C -0.154 4.154 22 C -0.084 4.084 23 C -0.207 4.207 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.415 0.585 30 H 0.176 0.824 31 H 0.121 0.879 32 H 0.380 0.620 33 H -0.236 1.236 34 H -0.241 1.241 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 0.318 -2.591 4.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.104 4.104 5 C -0.082 4.082 6 H 0.119 0.881 7 C -0.174 4.174 8 C 0.029 3.971 9 H 0.125 0.875 10 N -0.313 5.313 11 C -0.041 4.041 12 N -0.275 5.275 13 C -0.031 4.031 14 C -0.431 4.431 15 C -0.124 4.124 16 O -0.343 6.343 17 Si 0.555 3.445 18 S 0.336 5.664 19 C -0.185 4.185 20 C -0.098 4.098 21 C -0.172 4.172 22 C -0.102 4.102 23 C -0.226 4.226 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.252 0.748 30 H 0.193 0.807 31 H 0.138 0.862 32 H 0.227 0.773 33 H -0.159 1.159 34 H -0.165 1.165 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.592 -0.566 -1.769 4.954 hybrid contribution 0.169 0.956 0.477 1.082 sum -4.423 0.390 -1.292 4.625 Atomic orbital electron populations 1.23081 0.78210 1.04130 1.01430 1.86043 1.21420 1.26807 1.88627 1.18866 0.91824 0.84272 0.96618 1.19036 0.90105 0.95363 1.05860 1.21457 0.94021 0.95829 0.96901 0.88079 1.23462 0.95330 1.02210 0.96424 1.21879 1.00399 0.78575 0.96245 0.87544 1.43733 1.08895 1.06323 1.72317 1.23708 0.90943 0.92917 0.96513 1.66485 0.98878 1.37325 1.24777 1.21326 0.98441 0.87445 0.95873 1.25567 0.96701 1.00331 1.20525 1.24101 0.90700 1.02045 0.95550 1.86509 1.31079 1.95371 1.21297 0.94974 0.80657 0.77845 0.90994 1.83974 1.10246 1.04849 1.67372 1.23672 0.95187 1.01307 0.98289 1.20879 1.00054 0.91002 0.97848 1.21084 0.93935 0.98526 1.03678 1.20977 0.94796 0.97045 0.97350 1.21263 1.00121 0.92430 1.08750 0.92566 0.88096 0.92611 0.88255 0.90541 0.74755 0.80725 0.86171 0.77271 1.15938 1.16528 0.90841 0.88688 0.85208 0.85746 0.85760 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.43 9.43 -19.41 -0.18 -0.62 16 3 C 0.13 0.23 6.66 -39.22 -0.26 -0.03 16 4 C -0.10 -0.11 5.30 -104.47 -0.55 -0.67 16 5 C -0.06 0.02 3.76 -90.82 -0.34 -0.33 16 6 H 0.10 0.03 7.33 -51.93 -0.38 -0.35 16 7 C -0.14 0.17 7.29 -25.92 -0.19 -0.02 16 8 C 0.14 -0.05 4.42 -67.12 -0.30 -0.35 16 9 H 0.11 0.09 7.70 -51.93 -0.40 -0.31 16 10 N -0.67 0.17 5.42 -54.99 -0.30 -0.13 16 11 C 0.33 0.54 8.09 -87.67 -0.71 -0.17 16 12 N -0.55 -1.79 9.85 -15.20 -0.15 -1.94 16 13 C 0.12 0.27 11.22 -19.14 -0.21 0.05 16 14 C -0.31 -0.33 5.74 -36.02 -0.21 -0.54 16 15 C -0.01 0.00 2.99 36.00 0.11 0.11 16 16 O -0.54 -0.25 12.87 -35.23 -0.45 -0.70 16 17 Si 0.66 -0.25 31.06 -169.99 -5.28 -5.53 16 18 S 0.09 0.03 20.57 -107.50 -2.21 -2.18 16 19 C -0.15 0.04 7.27 -25.77 -0.19 -0.15 16 20 C -0.08 -0.03 8.61 -39.61 -0.34 -0.37 16 21 C -0.15 -0.05 10.04 -39.56 -0.40 -0.45 16 22 C -0.08 -0.04 10.04 -39.61 -0.40 -0.44 16 23 C -0.21 -0.20 9.04 -39.44 -0.36 -0.55 16 24 H 0.06 -0.13 7.67 -51.93 -0.40 -0.53 16 25 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 26 H 0.06 -0.12 7.65 -51.93 -0.40 -0.52 16 27 H 0.10 -0.16 7.72 -51.93 -0.40 -0.56 16 28 H 0.08 -0.11 8.14 -51.92 -0.42 -0.53 16 29 H 0.41 -0.84 8.83 -40.82 -0.36 -1.20 16 30 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16 31 H 0.12 0.04 7.96 -51.93 -0.41 -0.37 16 32 H 0.38 -1.19 8.70 45.56 0.40 -0.79 16 33 H -0.24 -0.52 7.11 56.52 0.40 -0.12 16 34 H -0.24 -0.45 7.11 56.52 0.40 -0.05 16 35 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.09 -0.08 6.32 -51.93 -0.33 -0.41 16 37 H 0.13 -0.18 6.66 -52.49 -0.35 -0.53 16 38 H 0.12 -0.16 8.06 -52.48 -0.42 -0.59 16 39 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 40 H 0.13 -0.10 6.30 -52.48 -0.33 -0.43 16 LS Contribution 345.13 15.07 5.20 5.20 Total: 0.00 -6.22 345.13 -11.82 -18.05 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: -5.10 Total: -9.19 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -3.35 Total: -2.95 kcal Atomic # 7 Polarization: -1.63 SS G_CDS: -0.45 Total: -2.07 kcal Atomic # 8 Polarization: -0.68 SS G_CDS: -0.64 Total: -1.32 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: -5.28 Total: -5.53 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.21 Total: -2.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -6.22 -11.82 -18.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15784316_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.080 kcal (2) G-P(sol) polarization free energy of solvation -6.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds