Wall clock time and date at job start Mon Mar 8 2021 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 116.99987 * 2 1 4 4 C 1.38715 * 120.05569 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.02708 * 0.02562 * 4 3 2 6 6 H 1.08994 * 112.84950 * 348.52849 * 5 4 3 7 7 C 1.53784 * 113.61244 * 119.72302 * 5 4 3 8 8 C 1.53777 * 87.08174 * 139.98254 * 7 5 4 9 9 H 1.08999 * 113.61371 * 219.93699 * 8 7 5 10 10 N 1.46493 * 113.61598 * 89.11010 * 8 7 5 11 11 C 1.38614 * 119.99957 * 156.52941 * 10 8 7 12 12 N 1.29691 * 124.94862 * 359.97438 * 11 10 8 13 13 C 1.32120 * 116.86697 * 180.02562 * 12 11 10 14 14 C 1.33329 * 114.57921 * 0.02562 * 13 12 11 15 15 C 1.50696 * 125.94973 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.47131 * 299.99393 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 179.97438 * 15 14 13 18 18 S 1.70964 * 124.95354 * 180.33562 * 11 10 8 19 19 C 1.53789 * 87.17114 * 334.52479 * 8 7 5 20 20 C 1.38166 * 119.94237 * 179.72346 * 4 3 2 21 21 C 1.38240 * 120.05637 * 0.22977 * 20 4 3 22 22 C 1.38283 * 120.11189 * 0.02733 * 21 20 4 23 23 C 1.38116 * 120.05653 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47330 * 60.00090 * 1 2 3 25 25 H 1.09001 * 109.47126 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46942 * 299.99729 * 1 2 3 27 27 H 1.08996 * 113.61388 * 25.42727 * 7 5 4 28 28 H 1.09009 * 113.60855 * 254.52973 * 7 5 4 29 29 H 0.97002 * 120.00423 * 336.53749 * 10 8 7 30 30 H 1.08002 * 122.70976 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.47358 * 59.99752 * 15 14 13 32 32 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 33 33 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 34 34 H 1.48492 * 109.99800 * 301.31995 * 17 15 14 35 35 H 1.08997 * 113.61678 * 140.02615 * 19 8 7 36 36 H 1.09002 * 113.61195 * 270.92689 * 19 8 7 37 37 H 1.07999 * 119.97161 * 180.25921 * 20 4 3 38 38 H 1.08003 * 119.94204 * 180.02562 * 21 20 4 39 39 H 1.08005 * 119.96872 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.02794 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2537 0.0221 0.0005 6 1 3.6599 -0.8699 0.1999 7 6 5.1758 -0.1124 -1.2228 8 6 6.2396 -0.6681 -0.2615 9 1 7.2481 -0.3132 -0.4739 10 7 6.1726 -2.1213 -0.0886 11 6 7.2956 -2.8231 0.3209 12 7 8.4511 -2.2924 0.5764 13 6 9.4143 -3.1131 0.9561 14 6 9.0556 -4.3955 1.0237 15 6 9.9456 -5.5430 1.4263 16 8 11.0539 -5.6242 0.5279 17 14 8.9762 -7.1327 1.3627 18 16 7.3619 -4.5154 0.5544 19 6 5.5321 0.1183 0.8547 20 6 4.0559 2.5171 -0.0052 21 6 3.3019 3.6757 -0.0068 22 6 1.9209 3.6047 -0.0019 23 6 1.2915 2.3753 0.0050 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 5.4486 0.8429 -1.6711 28 1 4.8262 -0.8403 -1.9552 29 1 5.3424 -2.5925 -0.2608 30 1 10.4116 -2.7728 1.1926 31 1 10.3110 -5.3810 2.4404 32 1 10.8026 -5.7680 -0.3948 33 1 9.8428 -8.2722 1.7570 34 1 7.8031 -7.0487 2.2692 35 1 5.4700 -0.4233 1.7986 36 1 5.9023 1.1366 0.9735 37 1 5.1344 2.5752 -0.0091 38 1 3.7922 4.6380 -0.0117 39 1 1.3340 4.5114 -0.0027 40 1 0.2128 2.3204 0.0092 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15784316_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:20 Heat of formation + Delta-G solvation = 45.829403 kcal Electronic energy + Delta-G solvation = -23477.465627 eV Core-core repulsion = 19966.308422 eV Total energy + Delta-G solvation = -3511.157205 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64963 -40.78230 -39.85218 -38.19775 -37.77533 -35.26593 -32.10946 -31.05990 -31.01172 -28.18642 -26.90044 -26.65760 -26.07688 -24.52733 -23.16139 -22.71019 -21.22003 -20.11000 -19.46776 -19.04990 -18.08012 -17.41029 -17.06376 -16.68385 -16.61947 -16.51927 -16.24989 -15.83155 -15.55522 -15.35318 -15.09377 -14.99084 -14.80310 -14.32031 -14.09656 -13.99422 -13.50084 -13.23026 -13.01735 -12.87169 -12.74268 -12.45572 -12.29505 -12.05681 -12.02405 -11.88602 -11.66626 -11.20331 -11.01301 -10.80967 -10.27133 -10.16790 -9.77562 -9.08434 -8.74090 -5.10779 -0.06506 0.00678 0.34081 0.48062 0.66504 1.27118 1.58110 1.88466 1.97239 2.14657 2.37150 2.75618 3.44762 3.52069 3.62929 3.70876 3.72982 3.91443 3.93530 4.00647 4.11689 4.19337 4.31392 4.34906 4.45302 4.48648 4.49309 4.62679 4.69131 4.71439 4.72267 4.79110 4.80780 4.95874 5.01690 5.08291 5.10061 5.28092 5.40386 5.55755 5.61950 5.85022 5.89159 6.14147 6.43263 6.73402 7.00421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.111 3.889 4 C -0.116 4.116 5 C -0.059 4.059 6 H 0.095 0.905 7 C -0.124 4.124 8 C 0.139 3.861 9 H 0.095 0.905 10 N -0.668 5.668 11 C 0.318 3.682 12 N -0.576 5.576 13 C 0.104 3.896 14 C -0.309 4.309 15 C -0.013 4.013 16 O -0.550 6.550 17 Si 0.730 3.270 18 S 0.114 5.886 19 C -0.141 4.141 20 C -0.086 4.086 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.217 4.217 24 H 0.062 0.938 25 H 0.115 0.885 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.423 0.577 30 H 0.179 0.821 31 H 0.118 0.882 32 H 0.395 0.605 33 H -0.271 1.271 34 H -0.269 1.269 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 0.390 -3.141 5.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.065 3.935 4 C -0.117 4.117 5 C -0.077 4.077 6 H 0.113 0.887 7 C -0.162 4.162 8 C 0.031 3.969 9 H 0.113 0.887 10 N -0.308 5.308 11 C -0.053 4.053 12 N -0.302 5.302 13 C -0.046 4.046 14 C -0.432 4.432 15 C -0.126 4.126 16 O -0.358 6.358 17 Si 0.633 3.367 18 S 0.364 5.636 19 C -0.181 4.181 20 C -0.103 4.103 21 C -0.181 4.181 22 C -0.112 4.112 23 C -0.236 4.236 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.262 0.738 30 H 0.196 0.804 31 H 0.136 0.864 32 H 0.245 0.755 33 H -0.197 1.197 34 H -0.195 1.195 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.030 -0.483 -2.346 5.571 hybrid contribution 0.279 0.923 0.676 1.178 sum -4.751 0.440 -1.670 5.055 Atomic orbital electron populations 1.23273 0.76950 1.05297 1.01923 1.86015 1.22849 1.26890 1.88732 1.19120 0.92354 0.84695 0.97295 1.19263 0.90269 0.96056 1.06094 1.21378 0.93745 0.95206 0.97379 0.88716 1.23401 0.94316 1.02512 0.96017 1.21820 0.99981 0.78507 0.96543 0.88658 1.43776 1.08810 1.06427 1.71747 1.23910 0.91032 0.93781 0.96537 1.66478 0.99618 1.38306 1.25823 1.21445 0.98663 0.87920 0.96600 1.25703 0.97281 1.00222 1.19968 1.24213 0.90723 1.02133 0.95564 1.86476 1.31372 1.95367 1.22549 0.94099 0.77787 0.75170 0.89620 1.83822 1.09397 1.03607 1.66820 1.23647 0.95331 1.01462 0.97619 1.21103 1.00892 0.90820 0.97524 1.21367 0.94128 0.99270 1.03328 1.21260 0.95225 0.97556 0.97138 1.21488 1.00885 0.92463 1.08760 0.91962 0.86655 0.92200 0.87633 0.90046 0.73773 0.80449 0.86439 0.75488 1.19666 1.19527 0.92210 0.88101 0.83796 0.84231 0.84214 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.08 9.43 -92.36 -0.87 -1.95 16 3 C 0.11 0.45 6.66 22.51 0.15 0.60 16 4 C -0.12 -0.30 5.30 -19.77 -0.10 -0.41 16 5 C -0.06 0.00 3.76 -10.92 -0.04 -0.04 16 6 H 0.09 0.11 7.33 -2.39 -0.02 0.10 16 7 C -0.12 0.32 7.29 31.12 0.23 0.55 16 8 C 0.14 -0.06 4.42 45.52 0.20 0.14 16 9 H 0.10 0.22 7.70 -2.39 -0.02 0.20 16 10 N -0.67 0.14 5.42 -327.90 -1.78 -1.64 16 11 C 0.32 1.15 8.09 179.32 1.45 2.60 16 12 N -0.58 -4.17 9.85 -202.02 -1.99 -6.16 16 13 C 0.10 0.53 11.22 83.54 0.94 1.47 16 14 C -0.31 -0.70 5.74 24.57 0.14 -0.56 16 15 C -0.01 -0.01 2.99 71.23 0.21 0.21 16 16 O -0.55 -0.38 12.87 -148.98 -1.92 -2.29 16 17 Si 0.73 -0.60 31.06 68.60 2.13 1.53 16 18 S 0.11 0.06 20.57 -56.49 -1.16 -1.10 16 19 C -0.14 0.00 7.27 31.21 0.23 0.22 16 20 C -0.09 -0.06 8.61 22.25 0.19 0.14 16 21 C -0.16 -0.07 10.04 22.28 0.22 0.15 16 22 C -0.09 -0.08 10.04 22.25 0.22 0.14 16 23 C -0.22 -0.46 9.04 22.36 0.20 -0.26 16 24 H 0.06 -0.29 7.67 -2.39 -0.02 -0.31 16 25 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.06 -0.25 7.65 -2.39 -0.02 -0.27 16 27 H 0.11 -0.38 7.72 -2.39 -0.02 -0.39 16 28 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 29 H 0.42 -1.69 8.83 -92.71 -0.82 -2.51 16 30 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 31 H 0.12 0.11 7.96 -2.39 -0.02 0.09 16 32 H 0.40 -2.70 8.70 -74.06 -0.64 -3.34 16 33 H -0.27 -1.35 7.11 99.48 0.71 -0.65 16 34 H -0.27 -1.04 7.11 99.48 0.71 -0.33 16 35 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.10 -0.14 6.32 -2.39 -0.02 -0.15 16 37 H 0.14 -0.45 6.66 -2.91 -0.02 -0.47 16 38 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 39 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 40 H 0.14 -0.20 6.30 -2.91 -0.02 -0.22 16 Total: 0.00 -14.60 345.13 -0.57 -15.18 By element: Atomic # 1 Polarization: -9.22 SS G_CDS: -0.34 Total: -9.56 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.35 Total: 6.01 kcal Atomic # 7 Polarization: -4.03 SS G_CDS: -3.77 Total: -7.80 kcal Atomic # 8 Polarization: -1.46 SS G_CDS: -2.79 Total: -4.25 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.13 Total: 1.53 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.16 Total: -1.10 kcal Total: -14.60 -0.57 -15.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15784316_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.005 kcal (2) G-P(sol) polarization free energy of solvation -14.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds