Wall clock time and date at job start Mon Mar 8 2021 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35906 * 116.99754 * 2 1 4 4 C 1.38706 * 120.05835 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.02690 * 0.02562 * 4 3 2 6 6 H 1.09002 * 112.90631 * 10.96864 * 5 4 3 7 7 C 1.54049 * 113.62132 * 142.22541 * 5 4 3 8 8 C 1.53778 * 86.98292 * 139.97730 * 7 5 4 9 9 H 1.09002 * 113.61412 * 219.98092 * 8 7 5 10 10 N 1.46500 * 113.61572 * 89.16340 * 8 7 5 11 11 C 1.38619 * 120.00285 * 105.85920 * 10 8 7 12 12 N 1.29680 * 124.95194 * 180.02562 * 11 10 8 13 13 C 1.32117 * 116.86756 * 179.71888 * 12 11 10 14 14 C 1.50698 * 122.71459 * 180.34523 * 13 12 11 15 15 O 1.42900 * 109.47494 * 150.18789 * 14 13 12 16 16 Si 1.86306 * 109.46820 * 30.18534 * 14 13 12 17 17 C 1.33329 * 114.57659 * 0.51986 * 13 12 11 18 18 C 1.50706 * 125.94840 * 179.79019 * 17 13 12 19 19 S 1.70970 * 124.94581 * 0.03085 * 11 10 8 20 20 C 1.53774 * 87.17662 * 334.57046 * 8 7 5 21 21 C 1.38161 * 119.94762 * 179.72088 * 4 3 2 22 22 C 1.38249 * 120.05539 * 0.27937 * 21 4 3 23 23 C 1.38291 * 120.10937 * 359.97281 * 22 21 4 24 24 C 1.38128 * 120.05617 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47764 * 60.00065 * 1 2 3 26 26 H 1.09009 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47235 * 299.99337 * 1 2 3 28 28 H 1.08996 * 113.60940 * 25.47749 * 7 5 4 29 29 H 1.08997 * 113.69621 * 254.48919 * 7 5 4 30 30 H 0.97002 * 120.00062 * 285.86420 * 10 8 7 31 31 H 1.09000 * 109.47423 * 270.18703 * 14 13 12 32 32 H 0.96700 * 113.99477 * 300.00239 * 15 14 13 33 33 H 1.48498 * 109.99923 * 58.68552 * 16 14 13 34 34 H 1.48506 * 109.99804 * 180.02562 * 16 14 13 35 35 H 1.09001 * 109.46953 * 179.71216 * 18 17 13 36 36 H 1.09000 * 109.47318 * 299.70813 * 18 17 13 37 37 H 1.09000 * 109.47161 * 59.71444 * 18 17 13 38 38 H 1.09001 * 113.61772 * 140.02025 * 20 8 7 39 39 H 1.08993 * 113.61729 * 270.84365 * 20 8 7 40 40 H 1.08002 * 119.97574 * 180.25113 * 21 4 3 41 41 H 1.07995 * 119.94662 * 179.97438 * 22 21 4 42 42 H 1.07997 * 119.96941 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.02826 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4310 1.2850 -0.0005 5 6 4.2537 0.0224 -0.0017 6 1 3.6594 -0.8711 -0.1931 7 6 5.5250 0.1148 -0.8668 8 6 6.2417 -0.6666 0.2471 9 1 7.2518 -0.3106 0.4497 10 7 6.1734 -2.1205 0.0813 11 6 7.2932 -2.8241 -0.3343 12 7 7.3402 -4.1077 -0.5124 13 6 8.4919 -4.6125 -0.9180 14 6 8.6913 -6.0842 -1.1733 15 8 9.6789 -6.2617 -2.1907 16 14 7.0827 -6.8413 -1.7303 17 6 9.4645 -3.7149 -1.0796 18 6 10.8735 -4.0080 -1.5267 19 16 8.8135 -2.1258 -0.6867 20 6 5.1857 -0.1067 1.2147 21 6 4.0558 2.5173 -0.0064 22 6 3.3017 3.6760 -0.0058 23 6 1.9206 3.6049 0.0000 24 6 1.2912 2.3753 0.0058 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 5.8941 1.1326 -0.9930 29 1 5.4553 -0.4311 -1.8076 30 1 5.3447 -2.5910 0.2623 31 1 9.0233 -6.5704 -0.2559 32 1 9.4495 -5.8538 -3.0369 33 1 6.6033 -6.1657 -2.9627 34 1 7.2659 -8.2929 -1.9849 35 1 11.4410 -3.0785 -1.5721 36 1 11.3458 -4.6877 -0.8174 37 1 10.8528 -4.4697 -2.5138 38 1 4.8422 -0.8312 1.9530 39 1 5.4628 0.8499 1.6575 40 1 5.1342 2.5754 -0.0109 41 1 3.7919 4.6382 -0.0100 42 1 1.3337 4.5114 0.0008 43 1 0.2127 2.3203 0.0107 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15784316_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:24 Heat of formation + Delta-G solvation = 43.971534 kcal Electronic energy + Delta-G solvation = -25623.519850 eV Core-core repulsion = 21956.744463 eV Total energy + Delta-G solvation = -3666.775387 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64672 -41.05092 -40.06834 -38.23698 -37.80923 -35.36129 -32.77068 -31.65666 -31.04479 -29.26999 -28.15575 -26.72332 -26.22036 -25.53080 -24.35762 -23.14151 -22.71886 -20.84509 -20.32495 -19.10531 -18.80559 -17.95363 -17.66237 -17.19313 -16.72145 -16.65914 -16.62711 -16.36312 -15.78134 -15.53439 -15.34662 -15.10036 -14.94353 -14.38115 -14.27775 -14.17702 -13.92367 -13.81602 -13.53097 -13.40580 -13.20234 -12.97872 -12.83573 -12.70444 -12.47210 -12.31109 -12.05315 -11.98882 -11.78529 -11.64720 -11.25385 -10.88948 -10.66103 -10.55173 -10.04270 -9.76162 -9.07406 -8.62326 -4.79835 -0.03111 0.15573 0.35322 0.49393 0.73635 1.28335 1.65477 1.81381 1.88985 1.98907 2.38135 2.76826 3.27906 3.41489 3.49205 3.61222 3.66665 3.91607 3.97767 4.08332 4.14406 4.20533 4.29559 4.32708 4.34245 4.42111 4.48587 4.49971 4.55752 4.68867 4.72046 4.78069 4.79163 4.81301 4.88233 4.95522 5.02262 5.05208 5.11189 5.21177 5.30544 5.41836 5.55441 5.61929 5.74503 5.86728 6.28932 6.42182 6.44076 6.92006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.108 3.892 4 C -0.115 4.115 5 C -0.061 4.061 6 H 0.090 0.910 7 C -0.143 4.143 8 C 0.126 3.874 9 H 0.104 0.896 10 N -0.670 5.670 11 C 0.313 3.687 12 N -0.559 5.559 13 C 0.055 3.945 14 C -0.039 4.039 15 O -0.532 6.532 16 Si 0.778 3.222 17 C -0.257 4.257 18 C -0.057 4.057 19 S 0.124 5.876 20 C -0.122 4.122 21 C -0.084 4.084 22 C -0.162 4.162 23 C -0.095 4.095 24 C -0.219 4.219 25 H 0.059 0.941 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.416 0.584 31 H 0.132 0.868 32 H 0.384 0.616 33 H -0.306 1.306 34 H -0.290 1.290 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 5.335 1.868 5.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.063 3.937 4 C -0.116 4.116 5 C -0.080 4.080 6 H 0.109 0.891 7 C -0.182 4.182 8 C 0.021 3.979 9 H 0.122 0.878 10 N -0.310 5.310 11 C -0.059 4.059 12 N -0.287 5.287 13 C -0.076 4.076 14 C -0.152 4.152 15 O -0.339 6.339 16 Si 0.684 3.316 17 C -0.380 4.380 18 C -0.117 4.117 19 S 0.373 5.627 20 C -0.160 4.160 21 C -0.101 4.101 22 C -0.180 4.180 23 C -0.113 4.113 24 C -0.237 4.237 25 H 0.078 0.922 26 H 0.132 0.868 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.255 0.745 31 H 0.149 0.851 32 H 0.234 0.766 33 H -0.234 1.234 34 H -0.218 1.218 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.957 5.310 1.861 5.957 hybrid contribution -0.305 -0.469 -1.008 1.153 sum -2.262 4.840 0.854 5.411 Atomic orbital electron populations 1.23260 0.77022 1.05218 1.01902 1.86027 1.22806 1.27035 1.88747 1.19169 0.92533 0.84607 0.97355 1.19250 0.90131 0.96089 1.06128 1.21363 0.93966 0.95166 0.97491 0.89143 1.23735 0.95146 1.01835 0.97482 1.22040 1.00448 0.77656 0.97793 0.87789 1.43737 1.09658 1.05817 1.71801 1.23484 0.93878 0.90789 0.97716 1.65717 1.26881 1.09470 1.26612 1.20198 0.87595 0.98264 1.01508 1.24453 1.03485 0.91636 0.95607 1.86596 1.44339 1.79190 1.23757 0.92886 0.79714 0.74467 0.84513 1.25401 1.02938 0.93875 1.15815 1.20157 0.87690 1.01565 1.02240 1.83797 1.02534 1.09740 1.66663 1.23382 0.93962 1.02677 0.95953 1.21128 1.01086 0.90547 0.97358 1.21383 0.94005 0.99406 1.03223 1.21265 0.95394 0.97429 0.97178 1.21483 1.00828 0.92546 1.08864 0.92189 0.86811 0.91972 0.86959 0.91707 0.74517 0.85069 0.76604 1.23352 1.21808 0.91540 0.90930 0.89646 0.90283 0.86831 0.83199 0.84086 0.84343 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.19 9.43 -92.49 -0.87 -2.06 16 3 C 0.11 0.39 6.66 22.51 0.15 0.54 16 4 C -0.12 -0.13 5.30 -19.77 -0.10 -0.24 16 5 C -0.06 0.09 3.76 -10.92 -0.04 0.05 16 6 H 0.09 0.12 7.33 -2.39 -0.02 0.10 16 7 C -0.14 0.50 7.27 31.21 0.23 0.72 16 8 C 0.13 -0.50 4.28 45.51 0.19 -0.31 16 9 H 0.10 -0.55 7.11 -2.39 -0.02 -0.56 16 10 N -0.67 0.24 5.42 -327.90 -1.78 -1.54 16 11 C 0.31 1.21 8.24 179.32 1.48 2.69 16 12 N -0.56 -3.70 8.95 -189.86 -1.70 -5.40 16 13 C 0.05 0.31 5.91 41.40 0.24 0.56 16 14 C -0.04 -0.14 2.94 71.24 0.21 0.07 16 15 O -0.53 -1.64 10.17 -148.98 -1.51 -3.16 16 16 Si 0.78 3.46 32.09 68.60 2.20 5.66 16 17 C -0.26 -1.08 6.50 24.58 0.16 -0.92 16 18 C -0.06 -0.05 8.92 71.24 0.64 0.59 16 19 S 0.12 0.24 21.71 -56.49 -1.23 -0.99 16 20 C -0.12 0.57 7.29 31.12 0.23 0.79 16 21 C -0.08 0.13 8.61 22.25 0.19 0.32 16 22 C -0.16 0.19 10.04 22.29 0.22 0.41 16 23 C -0.09 0.00 10.04 22.26 0.22 0.22 16 24 C -0.22 -0.37 9.04 22.37 0.20 -0.17 16 25 H 0.06 -0.23 7.67 -2.39 -0.02 -0.25 16 26 H 0.11 -0.66 8.14 -2.38 -0.02 -0.68 16 27 H 0.06 -0.26 7.65 -2.39 -0.02 -0.28 16 28 H 0.11 -0.72 6.32 -2.39 -0.02 -0.73 16 29 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.42 -0.44 8.83 -92.71 -0.82 -1.25 16 31 H 0.13 0.23 7.96 -2.39 -0.02 0.21 16 32 H 0.38 -0.58 8.13 -74.06 -0.60 -1.18 16 33 H -0.31 -3.31 7.11 99.48 0.71 -2.61 16 34 H -0.29 -2.66 7.11 99.48 0.71 -1.95 16 35 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.09 -0.05 6.37 -2.39 -0.02 -0.07 16 38 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.11 -0.77 7.73 -2.39 -0.02 -0.79 16 40 H 0.15 -1.00 6.66 -2.91 -0.02 -1.02 16 41 H 0.14 -0.72 8.06 -2.91 -0.02 -0.75 16 42 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 43 H 0.14 -0.20 6.30 -2.91 -0.02 -0.22 16 Total: 0.00 -14.13 361.49 0.12 -14.01 By element: Atomic # 1 Polarization: -12.59 SS G_CDS: -0.33 Total: -12.91 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.33 Total: 6.39 kcal Atomic # 7 Polarization: -3.46 SS G_CDS: -3.48 Total: -6.94 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -2.39 Total: -5.22 kcal Atomic # 14 Polarization: 3.46 SS G_CDS: 2.20 Total: 5.66 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.23 Total: -0.99 kcal Total: -14.13 0.12 -14.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15784316_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.981 kcal (2) G-P(sol) polarization free energy of solvation -14.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds