Wall clock time and date at job start Mon Mar 8 2021 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46966 * 2 1 4 4 C 1.50703 * 109.47350 * 240.00201 * 2 1 3 5 5 C 1.38025 * 120.33462 * 119.97221 * 4 2 1 6 6 N 1.31977 * 120.85299 * 179.74284 * 5 4 2 7 7 C 1.32389 * 121.62193 * 0.57576 * 6 5 4 8 8 N 1.39001 * 119.70562 * 179.70564 * 7 6 5 9 9 C 1.46507 * 120.00100 * 179.72592 * 8 7 6 10 10 H 1.08996 * 112.84748 * 23.80001 * 9 8 7 11 11 C 1.53777 * 113.61503 * 154.99988 * 9 8 7 12 12 C 1.53787 * 87.07927 * 140.06328 * 11 9 8 13 13 H 1.08999 * 113.61318 * 89.20267 * 12 11 9 14 14 C 1.50700 * 113.61241 * 220.01624 * 12 11 9 15 15 C 1.38235 * 120.00255 * 239.99922 * 14 12 11 16 16 C 1.38234 * 120.00220 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38238 * 119.99742 * 359.52139 * 17 16 15 19 19 C 1.38234 * 120.00095 * 0.43554 * 18 17 16 20 20 C 1.53777 * 87.08106 * 334.56584 * 12 11 9 21 21 C 1.39141 * 120.59140 * 359.43069 * 7 6 5 22 22 C 1.38297 * 119.09383 * 0.27505 * 21 7 6 23 23 H 0.96707 * 113.99819 * 59.99641 * 1 2 3 24 24 H 1.08997 * 109.47313 * 119.99722 * 2 1 3 25 25 H 1.48497 * 110.00262 * 298.68280 * 3 2 1 26 26 H 1.48495 * 109.99897 * 60.00243 * 3 2 1 27 27 H 1.07999 * 119.57609 * 0.02918 * 5 4 2 28 28 H 0.96999 * 120.00349 * 359.73005 * 8 7 6 29 29 H 1.09000 * 113.61083 * 25.51890 * 11 9 8 30 30 H 1.08999 * 113.61494 * 254.61332 * 11 9 8 31 31 H 1.07999 * 119.99770 * 0.02562 * 15 14 12 32 32 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 34 34 H 1.08003 * 120.00356 * 180.21645 * 18 17 16 35 35 H 1.08001 * 120.00324 * 179.78922 * 19 18 17 36 36 H 1.09009 * 113.61202 * 139.97782 * 20 12 11 37 37 H 1.08996 * 113.61760 * 270.87858 * 20 12 11 38 38 H 1.07994 * 120.45471 * 180.30270 * 21 7 6 39 39 H 1.08006 * 120.75097 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7249 -0.0460 -2.1438 6 7 3.1746 -0.6596 -3.2223 7 6 2.8765 -1.9242 -3.4766 8 7 3.3669 -2.5294 -4.6278 9 6 3.0460 -3.9302 -4.9126 10 1 2.1316 -4.2632 -4.4216 11 6 3.1065 -4.2844 -6.4078 12 6 3.7538 -5.6141 -5.9860 13 1 3.0330 -6.4079 -5.7900 14 6 4.8758 -6.0531 -6.8912 15 6 4.7926 -7.2602 -7.5598 16 6 5.8216 -7.6626 -8.3905 17 6 6.9365 -6.8607 -8.5482 18 6 7.0180 -5.6518 -7.8827 19 6 5.9886 -5.2489 -7.0527 20 6 4.2334 -4.8879 -4.7182 21 6 2.0814 -2.6545 -2.5989 22 6 1.6002 -2.0399 -1.4573 23 1 -0.3933 0.4418 -0.7651 24 1 1.7924 -0.5138 0.8900 25 1 1.5879 2.4587 -1.2242 26 1 1.5615 2.4679 1.2085 27 1 2.9849 0.9879 -1.9714 28 1 3.9217 -2.0243 -5.2426 29 1 3.7702 -3.6388 -6.9828 30 1 2.1257 -4.4030 -6.8684 31 1 3.9233 -7.8885 -7.4336 32 1 5.7563 -8.6055 -8.9131 33 1 7.7424 -7.1771 -9.1938 34 1 7.8874 -5.0235 -8.0086 35 1 6.0537 -4.3060 -6.5301 36 1 4.1624 -5.4938 -3.8147 37 1 5.2051 -4.4073 -4.8314 38 1 1.8436 -3.6874 -2.8061 39 1 0.9804 -2.5815 -0.7579 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16147638_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:04 Heat of formation + Delta-G solvation = 65.755525 kcal Electronic energy + Delta-G solvation = -20839.511285 eV Core-core repulsion = 17714.285707 eV Total energy + Delta-G solvation = -3125.225579 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64201 -40.93788 -39.17189 -37.93964 -35.51750 -33.38553 -32.12535 -31.80521 -30.90707 -26.89638 -26.82753 -25.44030 -24.78052 -23.62385 -22.92660 -21.91817 -20.47082 -18.84953 -18.49255 -18.13222 -17.32985 -16.75317 -16.41685 -16.30548 -16.16410 -15.80957 -15.45946 -15.33245 -15.00738 -14.41379 -14.31298 -14.22054 -14.02255 -13.95199 -13.59978 -13.29906 -13.26734 -12.59850 -12.51007 -12.26936 -12.00112 -11.93615 -11.72843 -11.51432 -11.08598 -10.72345 -10.51003 -10.34337 -9.84668 -9.60391 -8.68710 -4.93862 0.26055 0.39516 0.44907 0.47431 1.32281 1.61792 1.99073 2.08069 2.78651 2.86519 3.33685 3.40654 3.54399 3.55028 3.63142 3.79261 3.81055 3.93088 3.98249 4.03494 4.08119 4.13614 4.21504 4.35218 4.38580 4.54293 4.57544 4.59967 4.61299 4.69258 4.75545 4.86301 4.86918 5.02608 5.05210 5.11129 5.16207 5.34210 5.54258 5.54843 5.61433 5.68655 6.01090 6.07176 6.43296 6.54081 7.17836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.678 3.322 4 C -0.235 4.235 5 C 0.157 3.843 6 N -0.540 5.540 7 C 0.409 3.591 8 N -0.711 5.711 9 C 0.130 3.870 10 H 0.111 0.889 11 C -0.135 4.135 12 C -0.071 4.071 13 H 0.102 0.898 14 C -0.071 4.071 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.147 4.147 21 C -0.239 4.239 22 C -0.006 4.006 23 H 0.375 0.625 24 H 0.116 0.884 25 H -0.258 1.258 26 H -0.256 1.256 27 H 0.155 0.845 28 H 0.406 0.594 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -2.210 -1.192 2.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.579 3.421 4 C -0.240 4.240 5 C -0.001 4.001 6 N -0.257 5.257 7 C 0.173 3.827 8 N -0.342 5.342 9 C 0.023 3.977 10 H 0.129 0.871 11 C -0.173 4.173 12 C -0.090 4.090 13 H 0.121 0.879 14 C -0.071 4.071 15 C -0.134 4.134 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.186 4.186 21 C -0.264 4.264 22 C -0.031 4.031 23 H 0.223 0.777 24 H 0.134 0.866 25 H -0.183 1.183 26 H -0.181 1.181 27 H 0.172 0.828 28 H 0.242 0.758 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.151 0.849 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.772 -1.418 -1.249 2.590 hybrid contribution -1.294 -0.534 -0.285 1.429 sum 0.478 -1.952 -1.534 2.528 Atomic orbital electron populations 1.86590 1.17994 1.79919 1.49332 1.24752 0.83660 1.10535 0.98011 0.95165 0.91724 0.74733 0.80470 1.20926 1.06160 0.96541 1.00376 1.22215 0.91377 0.98632 0.87868 1.67167 1.27277 1.09150 1.22127 1.18450 0.88941 0.88422 0.86899 1.44545 1.55702 1.11498 1.22415 1.22579 0.98623 0.79881 0.96570 0.87088 1.23459 1.02045 0.96201 0.95598 1.21325 0.95989 0.96744 0.94906 0.87936 1.19619 0.95188 0.94692 0.97610 1.21079 0.98997 0.96135 0.97196 1.21194 0.93980 0.99837 0.98573 1.21209 0.98244 0.94845 0.99867 1.21182 0.98770 0.96666 0.96946 1.21005 0.93723 0.99763 0.99019 1.23709 0.99427 0.97683 0.97828 1.21478 1.05524 1.01892 0.97503 1.21191 0.93816 0.93204 0.94918 0.77732 0.86580 1.18324 1.18083 0.82842 0.75761 0.89115 0.90219 0.86048 0.85980 0.86050 0.86005 0.86132 0.90556 0.88996 0.84883 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.69 12.78 -35.23 -0.45 -1.14 16 2 C -0.06 0.01 2.84 36.01 0.10 0.11 16 3 Si 0.68 -0.50 29.82 -169.99 -5.07 -5.57 16 4 C -0.23 -0.16 5.40 -104.46 -0.56 -0.72 16 5 C 0.16 0.20 9.84 -17.57 -0.17 0.03 16 6 N -0.54 -1.50 10.39 -12.44 -0.13 -1.63 16 7 C 0.41 0.66 7.65 -155.03 -1.19 -0.53 16 8 N -0.71 0.29 5.53 -53.14 -0.29 -0.01 16 9 C 0.13 -0.27 4.03 -67.12 -0.27 -0.54 16 10 H 0.11 -0.30 6.10 -51.93 -0.32 -0.62 16 11 C -0.13 0.31 7.30 -25.92 -0.19 0.12 16 12 C -0.07 0.14 3.98 -90.96 -0.36 -0.22 16 13 H 0.10 -0.28 8.09 -51.93 -0.42 -0.70 16 14 C -0.07 0.01 5.29 -104.62 -0.55 -0.54 16 15 C -0.12 -0.02 9.71 -39.58 -0.38 -0.40 16 16 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 17 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 18 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 19 C -0.12 -0.01 8.61 -39.58 -0.34 -0.35 16 20 C -0.15 0.29 7.25 -25.92 -0.19 0.10 16 21 C -0.24 -0.14 9.29 -39.22 -0.36 -0.51 16 22 C -0.01 0.00 9.77 -39.32 -0.38 -0.39 16 23 H 0.38 -0.50 8.70 45.56 0.40 -0.10 16 24 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 25 H -0.26 -0.33 7.11 56.52 0.40 0.07 16 26 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 27 H 0.15 -0.10 4.88 -52.49 -0.26 -0.35 16 28 H 0.41 -0.30 8.85 -40.82 -0.36 -0.66 16 29 H 0.09 -0.18 7.70 -51.93 -0.40 -0.58 16 30 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 31 H 0.12 -0.17 8.05 -52.49 -0.42 -0.60 16 32 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 33 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 34 H 0.12 -0.14 8.06 -52.48 -0.42 -0.57 16 35 H 0.12 -0.15 6.66 -52.49 -0.35 -0.50 16 36 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 37 H 0.09 -0.12 6.31 -51.93 -0.33 -0.45 16 38 H 0.13 -0.17 6.03 -52.49 -0.32 -0.48 16 39 H 0.14 -0.06 8.06 -52.48 -0.42 -0.48 16 LS Contribution 321.67 15.07 4.85 4.85 Total: 0.00 -5.68 321.67 -12.07 -17.75 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: -4.92 Total: -9.09 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -6.05 Total: -5.16 kcal Atomic # 7 Polarization: -1.21 SS G_CDS: -0.42 Total: -1.64 kcal Atomic # 8 Polarization: -0.69 SS G_CDS: -0.45 Total: -1.14 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -5.07 Total: -5.57 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -5.68 -12.07 -17.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.506 kcal (2) G-P(sol) polarization free energy of solvation -5.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds