Wall clock time and date at job start Mon Mar 8 2021 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46966 * 2 1 4 4 C 1.50703 * 109.47350 * 240.00201 * 2 1 3 5 5 C 1.38025 * 120.33462 * 119.97221 * 4 2 1 6 6 N 1.31977 * 120.85299 * 179.74284 * 5 4 2 7 7 C 1.32389 * 121.62193 * 0.57576 * 6 5 4 8 8 N 1.39001 * 119.70562 * 179.70564 * 7 6 5 9 9 C 1.46507 * 120.00100 * 179.72592 * 8 7 6 10 10 H 1.08996 * 112.84748 * 23.80001 * 9 8 7 11 11 C 1.53777 * 113.61503 * 154.99988 * 9 8 7 12 12 C 1.53787 * 87.07927 * 140.06328 * 11 9 8 13 13 H 1.08999 * 113.61318 * 89.20267 * 12 11 9 14 14 C 1.50700 * 113.61241 * 220.01624 * 12 11 9 15 15 C 1.38235 * 120.00255 * 239.99922 * 14 12 11 16 16 C 1.38234 * 120.00220 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38238 * 119.99742 * 359.52139 * 17 16 15 19 19 C 1.38234 * 120.00095 * 0.43554 * 18 17 16 20 20 C 1.53777 * 87.08106 * 334.56584 * 12 11 9 21 21 C 1.39141 * 120.59140 * 359.43069 * 7 6 5 22 22 C 1.38297 * 119.09383 * 0.27505 * 21 7 6 23 23 H 0.96707 * 113.99819 * 59.99641 * 1 2 3 24 24 H 1.08997 * 109.47313 * 119.99722 * 2 1 3 25 25 H 1.48497 * 110.00262 * 298.68280 * 3 2 1 26 26 H 1.48495 * 109.99897 * 60.00243 * 3 2 1 27 27 H 1.07999 * 119.57609 * 0.02918 * 5 4 2 28 28 H 0.96999 * 120.00349 * 359.73005 * 8 7 6 29 29 H 1.09000 * 113.61083 * 25.51890 * 11 9 8 30 30 H 1.08999 * 113.61494 * 254.61332 * 11 9 8 31 31 H 1.07999 * 119.99770 * 0.02562 * 15 14 12 32 32 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 34 34 H 1.08003 * 120.00356 * 180.21645 * 18 17 16 35 35 H 1.08001 * 120.00324 * 179.78922 * 19 18 17 36 36 H 1.09009 * 113.61202 * 139.97782 * 20 12 11 37 37 H 1.08996 * 113.61760 * 270.87858 * 20 12 11 38 38 H 1.07994 * 120.45471 * 180.30270 * 21 7 6 39 39 H 1.08006 * 120.75097 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7249 -0.0460 -2.1438 6 7 3.1746 -0.6596 -3.2223 7 6 2.8765 -1.9242 -3.4766 8 7 3.3669 -2.5294 -4.6278 9 6 3.0460 -3.9302 -4.9126 10 1 2.1316 -4.2632 -4.4216 11 6 3.1065 -4.2844 -6.4078 12 6 3.7538 -5.6141 -5.9860 13 1 3.0330 -6.4079 -5.7900 14 6 4.8758 -6.0531 -6.8912 15 6 4.7926 -7.2602 -7.5598 16 6 5.8216 -7.6626 -8.3905 17 6 6.9365 -6.8607 -8.5482 18 6 7.0180 -5.6518 -7.8827 19 6 5.9886 -5.2489 -7.0527 20 6 4.2334 -4.8879 -4.7182 21 6 2.0814 -2.6545 -2.5989 22 6 1.6002 -2.0399 -1.4573 23 1 -0.3933 0.4418 -0.7651 24 1 1.7924 -0.5138 0.8900 25 1 1.5879 2.4587 -1.2242 26 1 1.5615 2.4679 1.2085 27 1 2.9849 0.9879 -1.9714 28 1 3.9217 -2.0243 -5.2426 29 1 3.7702 -3.6388 -6.9828 30 1 2.1257 -4.4030 -6.8684 31 1 3.9233 -7.8885 -7.4336 32 1 5.7563 -8.6055 -8.9131 33 1 7.7424 -7.1771 -9.1938 34 1 7.8874 -5.0235 -8.0086 35 1 6.0537 -4.3060 -6.5301 36 1 4.1624 -5.4938 -3.8147 37 1 5.2051 -4.4073 -4.8314 38 1 1.8436 -3.6874 -2.8061 39 1 0.9804 -2.5815 -0.7579 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16147638_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:04 Heat of formation + Delta-G solvation = 71.854659 kcal Electronic energy + Delta-G solvation = -20839.246807 eV Core-core repulsion = 17714.285707 eV Total energy + Delta-G solvation = -3124.961100 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60116 -40.88893 -39.10059 -37.96581 -35.48498 -33.41716 -32.08560 -31.76106 -30.88637 -26.84771 -26.68267 -25.38199 -24.78896 -23.57808 -22.91672 -21.87156 -20.34239 -18.82048 -18.50189 -18.08665 -17.32486 -16.64868 -16.41436 -16.28100 -16.13939 -15.77192 -15.40747 -15.30737 -14.98439 -14.43194 -14.28795 -14.15420 -14.00098 -13.92333 -13.45213 -13.29716 -13.23309 -12.51338 -12.48643 -12.20330 -12.03811 -11.90025 -11.61863 -11.39439 -11.04081 -10.74707 -10.52998 -10.39438 -9.82309 -9.55944 -8.66946 -4.91004 0.23305 0.40609 0.43946 0.49700 1.34309 1.60918 1.96587 2.13867 2.80654 2.85188 3.44816 3.49057 3.60980 3.68655 3.73419 3.79483 3.95411 4.01172 4.05760 4.07310 4.14219 4.19836 4.29243 4.37899 4.52190 4.61641 4.62751 4.68845 4.76430 4.77688 4.83540 4.98604 5.03347 5.04430 5.12568 5.17905 5.25258 5.36478 5.56981 5.58648 5.64204 5.74715 6.05880 6.12539 6.50415 6.56031 7.15739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.062 4.062 3 Si 0.755 3.245 4 C -0.235 4.235 5 C 0.145 3.855 6 N -0.567 5.567 7 C 0.395 3.605 8 N -0.708 5.708 9 C 0.132 3.868 10 H 0.121 0.879 11 C -0.130 4.130 12 C -0.067 4.067 13 H 0.114 0.886 14 C -0.077 4.077 15 C -0.128 4.128 16 C -0.131 4.131 17 C -0.139 4.139 18 C -0.132 4.132 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.242 4.242 22 C -0.012 4.012 23 H 0.384 0.616 24 H 0.126 0.874 25 H -0.285 1.285 26 H -0.300 1.300 27 H 0.166 0.834 28 H 0.406 0.594 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -2.854 -1.092 3.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.172 4.172 3 Si 0.661 3.339 4 C -0.240 4.240 5 C -0.012 4.012 6 N -0.284 5.284 7 C 0.159 3.841 8 N -0.339 5.339 9 C 0.027 3.973 10 H 0.139 0.861 11 C -0.168 4.168 12 C -0.085 4.085 13 H 0.132 0.868 14 C -0.077 4.077 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.183 4.183 21 C -0.266 4.266 22 C -0.038 4.038 23 H 0.234 0.766 24 H 0.143 0.857 25 H -0.212 1.212 26 H -0.228 1.228 27 H 0.183 0.817 28 H 0.242 0.758 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.168 0.832 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.481 -2.085 -1.167 2.811 hybrid contribution -1.210 -0.325 -0.327 1.295 sum 0.271 -2.410 -1.494 2.848 Atomic orbital electron populations 1.86561 1.18711 1.80267 1.50135 1.24887 0.83137 1.11027 0.98162 0.94241 0.90551 0.72641 0.76463 1.20964 1.05997 0.96698 1.00383 1.22451 0.91622 0.99266 0.87820 1.67164 1.28292 1.10005 1.22958 1.18707 0.89355 0.88403 0.87630 1.44643 1.55360 1.11995 1.21866 1.22661 0.98895 0.78993 0.96746 0.86116 1.23414 1.02133 0.95862 0.95414 1.21345 0.95643 0.97115 0.94435 0.86783 1.19851 0.95591 0.94597 0.97700 1.21345 0.99515 0.96548 0.97230 1.21449 0.94108 1.00435 0.98859 1.21443 0.98810 0.95093 1.00314 1.21423 0.99374 0.97001 0.97162 1.21197 0.93897 1.00263 0.99149 1.23661 0.99111 0.97636 0.97929 1.21680 1.05070 1.02668 0.97209 1.21402 0.93866 0.93323 0.95193 0.76647 0.85662 1.21173 1.22840 0.81721 0.75800 0.89565 0.89736 0.84696 0.84830 0.85055 0.85052 0.85346 0.90324 0.89738 0.83156 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.31 12.78 -148.98 -1.90 -3.22 16 2 C -0.06 0.03 2.84 71.24 0.20 0.23 16 3 Si 0.76 -0.92 29.82 68.60 2.05 1.13 16 4 C -0.24 -0.26 5.40 -19.76 -0.11 -0.37 16 5 C 0.15 0.40 9.84 84.62 0.83 1.23 16 6 N -0.57 -3.33 10.39 -193.26 -2.01 -5.34 16 7 C 0.40 1.24 7.65 133.07 1.02 2.26 16 8 N -0.71 0.63 5.53 -322.04 -1.78 -1.15 16 9 C 0.13 -0.64 4.03 45.52 0.18 -0.46 16 10 H 0.12 -0.81 6.10 -2.39 -0.01 -0.82 16 11 C -0.13 0.66 7.30 31.12 0.23 0.89 16 12 C -0.07 0.30 3.98 -11.01 -0.04 0.26 16 13 H 0.11 -0.77 8.09 -2.39 -0.02 -0.79 16 14 C -0.08 0.03 5.29 -19.87 -0.11 -0.08 16 15 C -0.13 -0.03 9.71 22.27 0.22 0.19 16 16 C -0.13 -0.12 10.05 22.27 0.22 0.11 16 17 C -0.14 -0.18 10.05 22.27 0.22 0.04 16 18 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 19 C -0.13 -0.06 8.61 22.27 0.19 0.13 16 20 C -0.14 0.63 7.25 31.12 0.23 0.86 16 21 C -0.24 -0.14 9.29 22.50 0.21 0.07 16 22 C -0.01 -0.01 9.77 22.44 0.22 0.21 16 23 H 0.38 -1.01 8.70 -74.05 -0.64 -1.65 16 24 H 0.13 -0.30 7.96 -2.39 -0.02 -0.32 16 25 H -0.29 -0.88 7.11 99.48 0.71 -0.17 16 26 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 27 H 0.17 -0.18 4.88 -2.91 -0.01 -0.19 16 28 H 0.41 -0.46 8.85 -92.71 -0.82 -1.28 16 29 H 0.09 -0.34 7.70 -2.39 -0.02 -0.36 16 30 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.14 -0.46 8.05 -2.91 -0.02 -0.48 16 32 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 33 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 34 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 35 H 0.13 -0.25 6.66 -2.91 -0.02 -0.27 16 36 H 0.08 -0.36 8.14 -2.38 -0.02 -0.38 16 37 H 0.08 -0.22 6.31 -2.39 -0.02 -0.24 16 38 H 0.15 -0.57 6.03 -2.91 -0.02 -0.59 16 39 H 0.15 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: 0.00 -13.25 321.67 -0.05 -13.30 By element: Atomic # 1 Polarization: -10.03 SS G_CDS: -0.34 Total: -10.37 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 3.94 Total: 5.65 kcal Atomic # 7 Polarization: -2.70 SS G_CDS: -3.79 Total: -6.49 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: -1.90 Total: -3.22 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.05 Total: 1.13 kcal Total: -13.25 -0.05 -13.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.158 kcal (2) G-P(sol) polarization free energy of solvation -13.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds