Wall clock time and date at job start Mon Mar 8 2021 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.46725 * 2 1 4 4 C 1.50699 * 109.47184 * 119.99892 * 2 1 3 5 5 C 1.33329 * 125.95369 * 64.71987 * 4 2 1 6 6 N 1.32121 * 114.58167 * 179.79120 * 5 4 2 7 7 C 1.29683 * 116.86328 * 0.51517 * 6 5 4 8 8 N 1.38608 * 124.94884 * 179.71781 * 7 6 5 9 9 C 1.46497 * 120.00113 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84888 * 336.19558 * 9 8 7 11 11 C 1.53785 * 113.61680 * 107.49980 * 9 8 7 12 12 C 1.53783 * 87.08246 * 139.98442 * 11 9 8 13 13 H 1.08990 * 113.69125 * 89.12779 * 12 11 9 14 14 C 1.50701 * 113.61496 * 220.02520 * 12 11 9 15 15 C 1.38239 * 120.00160 * 37.21930 * 14 12 11 16 16 C 1.38237 * 119.99837 * 179.75251 * 15 14 12 17 17 C 1.38231 * 119.99745 * 0.52304 * 16 15 14 18 18 C 1.38229 * 120.00314 * 359.75437 * 17 16 15 19 19 C 1.38231 * 120.00163 * 359.97438 * 18 17 16 20 20 C 1.53781 * 113.61645 * 204.99858 * 9 8 7 21 21 S 1.70973 * 110.10565 * 359.72003 * 7 6 5 22 22 H 0.96700 * 114.00234 * 299.99899 * 1 2 3 23 23 H 1.09002 * 109.47382 * 239.99890 * 2 1 3 24 24 H 1.48499 * 109.99644 * 178.68105 * 3 2 1 25 25 H 1.48492 * 110.00078 * 299.99611 * 3 2 1 26 26 H 1.08001 * 122.70766 * 359.96078 * 5 4 2 27 27 H 0.97008 * 120.00317 * 180.02562 * 8 7 6 28 28 H 1.09000 * 113.61632 * 254.53179 * 11 9 8 29 29 H 1.09006 * 113.60864 * 25.43435 * 11 9 8 30 30 H 1.08004 * 119.99925 * 0.02562 * 15 14 12 31 31 H 1.07994 * 119.99979 * 180.30100 * 16 15 14 32 32 H 1.08002 * 119.99731 * 179.77409 * 17 16 15 33 33 H 1.08002 * 120.00073 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.00356 * 180.02562 * 19 18 17 35 35 H 1.08998 * 113.61658 * 334.56887 * 20 9 8 36 36 H 1.08997 * 113.61493 * 105.38454 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7578 -2.0014 1.5147 6 7 2.2982 -2.3904 2.6559 7 6 2.9111 -1.4846 3.3529 8 7 3.5305 -1.7058 4.5730 9 6 3.5230 -3.0452 5.1661 10 1 2.6973 -3.6613 4.8099 11 6 4.8884 -3.7507 5.1119 12 6 4.5907 -4.2654 6.5302 13 1 4.0580 -5.2161 6.5482 14 6 5.7900 -4.2491 7.4425 15 6 6.7053 -3.2162 7.3626 16 6 7.8028 -3.1987 8.2030 17 6 7.9906 -4.2196 9.1158 18 6 7.0784 -5.2554 9.1917 19 6 5.9780 -5.2701 8.3553 20 6 3.6736 -3.0421 6.6966 21 16 2.8438 0.0221 2.5475 22 1 -0.3933 0.4417 0.7650 23 1 1.7924 -0.5138 -0.8900 24 1 3.5345 1.7704 0.0321 25 1 1.5615 2.4679 -1.2085 26 1 1.2212 -2.6754 0.8634 27 1 3.9689 -0.9736 5.0341 28 1 4.9423 -4.5409 4.3631 29 1 5.7333 -3.0635 5.0652 30 1 6.5607 -2.4207 6.6466 31 1 8.5153 -2.3893 8.1439 32 1 8.8500 -4.2078 9.7698 33 1 7.2250 -6.0528 9.9052 34 1 5.2651 -6.0791 8.4149 35 1 4.1863 -2.1613 7.0831 36 1 2.7464 -3.2589 7.2270 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16147638_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:07 Heat of formation + Delta-G solvation = 72.047100 kcal Electronic energy + Delta-G solvation = -19434.946989 eV Core-core repulsion = 16399.146480 eV Total energy + Delta-G solvation = -3035.800509 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36354 -40.50151 -39.09959 -37.81290 -35.44307 -32.04235 -31.78638 -31.00947 -27.02877 -26.77146 -25.87556 -24.36688 -23.63392 -22.59610 -20.74466 -20.66442 -19.41371 -18.37580 -17.79587 -17.05695 -16.73156 -16.45713 -16.21971 -15.80955 -15.73569 -15.50617 -15.19089 -14.87063 -14.38037 -14.24761 -14.07095 -13.95991 -13.57803 -13.30087 -12.89232 -12.55603 -12.38738 -12.31340 -12.02077 -11.99859 -11.72958 -11.47256 -11.06043 -10.76679 -10.21256 -10.13892 -9.84659 -9.59761 -8.72248 -5.13392 -0.00809 0.05508 0.40263 0.47413 0.70992 1.27284 1.59856 1.92047 2.05298 2.14583 2.80187 3.37665 3.45518 3.56482 3.61238 3.77242 3.84460 3.96270 3.97926 4.07072 4.10553 4.21312 4.47880 4.49761 4.55840 4.59323 4.62561 4.72628 4.76894 4.89349 4.93979 5.01014 5.08344 5.12500 5.30035 5.54923 5.61283 5.68739 5.86726 6.05890 6.07509 6.53909 7.02746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.657 3.343 4 C -0.307 4.307 5 C 0.120 3.880 6 N -0.551 5.551 7 C 0.328 3.672 8 N -0.682 5.682 9 C 0.140 3.860 10 H 0.120 0.880 11 C -0.146 4.146 12 C -0.070 4.070 13 H 0.103 0.897 14 C -0.070 4.070 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.136 4.136 21 S 0.083 5.917 22 H 0.380 0.620 23 H 0.122 0.878 24 H -0.242 1.242 25 H -0.236 1.236 26 H 0.175 0.825 27 H 0.414 0.586 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 1.788 3.581 4.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.124 4.124 3 Si 0.557 3.443 4 C -0.430 4.430 5 C -0.031 4.031 6 N -0.276 5.276 7 C -0.043 4.043 8 N -0.320 5.320 9 C 0.032 3.968 10 H 0.138 0.862 11 C -0.185 4.185 12 C -0.089 4.089 13 H 0.121 0.879 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.175 4.175 21 S 0.333 5.667 22 H 0.227 0.773 23 H 0.139 0.861 24 H -0.166 1.166 25 H -0.160 1.160 26 H 0.192 0.808 27 H 0.251 0.749 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.107 0.893 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.533 2.388 3.068 4.179 hybrid contribution -0.054 -0.972 -0.371 1.042 sum 1.478 1.416 2.697 3.386 Atomic orbital electron populations 1.86514 1.16955 1.81690 1.49111 1.24112 0.84796 1.08896 0.94643 0.94986 0.81983 0.77979 0.89324 1.25558 1.15120 0.98350 1.03987 1.21328 0.96506 0.93132 0.92145 1.66466 1.18783 1.33560 1.08799 1.23789 0.95238 0.93083 0.92150 1.44118 1.58822 1.11844 1.17210 1.22618 0.98786 0.82929 0.92434 0.86245 1.23671 0.98077 1.00551 0.96230 1.21311 0.94283 0.99021 0.94278 0.87879 1.19635 0.95752 0.94940 0.96660 1.20987 0.94686 0.98468 0.99455 1.21169 0.97765 0.98738 0.95924 1.21202 0.99457 0.94624 0.98930 1.21196 0.94635 0.98580 0.99129 1.21089 0.97990 0.98395 0.95899 1.23491 1.00338 0.98337 0.95332 1.83936 1.55854 1.11561 1.15382 0.77298 0.86129 1.16617 1.15956 0.80765 0.74862 0.90516 0.89315 0.86226 0.86045 0.86061 0.85968 0.86003 0.89283 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.20 12.88 -35.23 -0.45 -0.66 16 2 C -0.01 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.35 31.07 -169.99 -5.28 -5.64 16 4 C -0.31 -0.27 5.73 -36.02 -0.21 -0.47 16 5 C 0.12 0.25 11.24 -19.14 -0.22 0.03 16 6 N -0.55 -1.63 9.83 -15.21 -0.15 -1.78 16 7 C 0.33 0.40 8.09 -87.69 -0.71 -0.31 16 8 N -0.68 0.66 5.51 -54.99 -0.30 0.36 16 9 C 0.14 -0.15 4.36 -67.12 -0.29 -0.44 16 10 H 0.12 0.04 7.66 -51.93 -0.40 -0.36 16 11 C -0.15 0.15 7.25 -25.92 -0.19 -0.04 16 12 C -0.07 0.10 3.98 -90.95 -0.36 -0.27 16 13 H 0.10 -0.19 8.09 -51.93 -0.42 -0.61 16 14 C -0.07 0.00 5.29 -104.62 -0.55 -0.56 16 15 C -0.12 0.00 8.62 -39.58 -0.34 -0.34 16 16 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 17 C -0.12 -0.05 10.05 -39.59 -0.40 -0.45 16 18 C -0.12 -0.05 10.05 -39.59 -0.40 -0.45 16 19 C -0.12 -0.04 9.71 -39.58 -0.38 -0.43 16 20 C -0.14 0.29 7.30 -25.92 -0.19 0.10 16 21 S 0.08 0.00 20.59 -107.50 -2.21 -2.22 16 22 H 0.38 -1.22 8.70 45.56 0.40 -0.82 16 23 H 0.12 0.02 7.96 -51.93 -0.41 -0.40 16 24 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 25 H -0.24 -0.49 7.11 56.52 0.40 -0.09 16 26 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 27 H 0.41 -1.27 8.85 -40.82 -0.36 -1.63 16 28 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.09 -0.10 6.30 -51.93 -0.33 -0.43 16 30 H 0.12 -0.19 6.64 -52.48 -0.35 -0.54 16 31 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 32 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 33 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 34 H 0.12 -0.13 8.05 -52.49 -0.42 -0.56 16 35 H 0.09 -0.23 7.71 -51.93 -0.40 -0.63 16 36 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 LS Contribution 317.27 15.07 4.78 4.78 Total: 0.00 -5.57 317.27 -12.58 -18.15 By element: Atomic # 1 Polarization: -4.63 SS G_CDS: -4.43 Total: -9.06 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -4.53 Total: -3.94 kcal Atomic # 7 Polarization: -0.97 SS G_CDS: -0.45 Total: -1.42 kcal Atomic # 8 Polarization: -0.20 SS G_CDS: -0.45 Total: -0.66 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.28 Total: -5.64 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -5.57 -12.58 -18.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.197 kcal (2) G-P(sol) polarization free energy of solvation -5.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds