Wall clock time and date at job start Mon Mar 8 2021 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.46725 * 2 1 4 4 C 1.50699 * 109.47184 * 119.99892 * 2 1 3 5 5 C 1.33329 * 125.95369 * 64.71987 * 4 2 1 6 6 N 1.32121 * 114.58167 * 179.79120 * 5 4 2 7 7 C 1.29683 * 116.86328 * 0.51517 * 6 5 4 8 8 N 1.38608 * 124.94884 * 179.71781 * 7 6 5 9 9 C 1.46497 * 120.00113 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84888 * 336.19558 * 9 8 7 11 11 C 1.53785 * 113.61680 * 107.49980 * 9 8 7 12 12 C 1.53783 * 87.08246 * 139.98442 * 11 9 8 13 13 H 1.08990 * 113.69125 * 89.12779 * 12 11 9 14 14 C 1.50701 * 113.61496 * 220.02520 * 12 11 9 15 15 C 1.38239 * 120.00160 * 37.21930 * 14 12 11 16 16 C 1.38237 * 119.99837 * 179.75251 * 15 14 12 17 17 C 1.38231 * 119.99745 * 0.52304 * 16 15 14 18 18 C 1.38229 * 120.00314 * 359.75437 * 17 16 15 19 19 C 1.38231 * 120.00163 * 359.97438 * 18 17 16 20 20 C 1.53781 * 113.61645 * 204.99858 * 9 8 7 21 21 S 1.70973 * 110.10565 * 359.72003 * 7 6 5 22 22 H 0.96700 * 114.00234 * 299.99899 * 1 2 3 23 23 H 1.09002 * 109.47382 * 239.99890 * 2 1 3 24 24 H 1.48499 * 109.99644 * 178.68105 * 3 2 1 25 25 H 1.48492 * 110.00078 * 299.99611 * 3 2 1 26 26 H 1.08001 * 122.70766 * 359.96078 * 5 4 2 27 27 H 0.97008 * 120.00317 * 180.02562 * 8 7 6 28 28 H 1.09000 * 113.61632 * 254.53179 * 11 9 8 29 29 H 1.09006 * 113.60864 * 25.43435 * 11 9 8 30 30 H 1.08004 * 119.99925 * 0.02562 * 15 14 12 31 31 H 1.07994 * 119.99979 * 180.30100 * 16 15 14 32 32 H 1.08002 * 119.99731 * 179.77409 * 17 16 15 33 33 H 1.08002 * 120.00073 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.00356 * 180.02562 * 19 18 17 35 35 H 1.08998 * 113.61658 * 334.56887 * 20 9 8 36 36 H 1.08997 * 113.61493 * 105.38454 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7578 -2.0014 1.5147 6 7 2.2982 -2.3904 2.6559 7 6 2.9111 -1.4846 3.3529 8 7 3.5305 -1.7058 4.5730 9 6 3.5230 -3.0452 5.1661 10 1 2.6973 -3.6613 4.8099 11 6 4.8884 -3.7507 5.1119 12 6 4.5907 -4.2654 6.5302 13 1 4.0580 -5.2161 6.5482 14 6 5.7900 -4.2491 7.4425 15 6 6.7053 -3.2162 7.3626 16 6 7.8028 -3.1987 8.2030 17 6 7.9906 -4.2196 9.1158 18 6 7.0784 -5.2554 9.1917 19 6 5.9780 -5.2701 8.3553 20 6 3.6736 -3.0421 6.6966 21 16 2.8438 0.0221 2.5475 22 1 -0.3933 0.4417 0.7650 23 1 1.7924 -0.5138 -0.8900 24 1 3.5345 1.7704 0.0321 25 1 1.5615 2.4679 -1.2085 26 1 1.2212 -2.6754 0.8634 27 1 3.9689 -0.9736 5.0341 28 1 4.9423 -4.5409 4.3631 29 1 5.7333 -3.0635 5.0652 30 1 6.5607 -2.4207 6.6466 31 1 8.5153 -2.3893 8.1439 32 1 8.8500 -4.2078 9.7698 33 1 7.2250 -6.0528 9.9052 34 1 5.2651 -6.0791 8.4149 35 1 4.1863 -2.1613 7.0831 36 1 2.7464 -3.2589 7.2270 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16147638_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:06 Heat of formation + Delta-G solvation = 78.104522 kcal Electronic energy + Delta-G solvation = -19434.684319 eV Core-core repulsion = 16399.146480 eV Total energy + Delta-G solvation = -3035.537839 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31327 -40.53700 -39.05040 -37.81814 -35.41637 -32.01102 -31.74610 -31.02816 -27.02866 -26.67308 -25.86945 -24.37818 -23.59012 -22.56741 -20.72401 -20.65313 -19.39251 -18.36213 -17.77316 -17.04179 -16.68349 -16.45235 -16.19909 -15.83161 -15.70019 -15.49693 -15.17871 -14.92792 -14.32169 -14.19874 -14.09701 -13.95084 -13.45631 -13.26160 -12.91319 -12.49853 -12.45013 -12.29703 -12.02344 -11.94288 -11.64962 -11.40907 -11.03931 -10.80706 -10.25938 -10.17063 -9.82038 -9.56258 -8.72494 -5.12221 -0.05872 0.03036 0.43161 0.49948 0.66643 1.26628 1.57925 1.88724 1.96769 2.20490 2.83540 3.46623 3.51308 3.62001 3.69607 3.80775 3.93833 3.94286 4.05545 4.14110 4.18473 4.29111 4.48083 4.55001 4.62324 4.66952 4.71837 4.73541 4.83252 4.97989 5.00420 5.02894 5.13178 5.18413 5.34464 5.58709 5.64316 5.72724 5.88252 6.12371 6.17095 6.72770 7.01404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.014 4.014 3 Si 0.733 3.267 4 C -0.310 4.310 5 C 0.103 3.897 6 N -0.579 5.579 7 C 0.316 3.684 8 N -0.673 5.673 9 C 0.141 3.859 10 H 0.104 0.896 11 C -0.143 4.143 12 C -0.067 4.067 13 H 0.106 0.894 14 C -0.076 4.076 15 C -0.126 4.126 16 C -0.130 4.130 17 C -0.138 4.138 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.125 4.125 21 S 0.115 5.885 22 H 0.395 0.605 23 H 0.118 0.882 24 H -0.270 1.270 25 H -0.272 1.272 26 H 0.177 0.823 27 H 0.424 0.576 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 2.506 4.164 4.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.127 4.127 3 Si 0.637 3.363 4 C -0.433 4.433 5 C -0.048 4.048 6 N -0.306 5.306 7 C -0.054 4.054 8 N -0.313 5.313 9 C 0.034 3.966 10 H 0.122 0.878 11 C -0.182 4.182 12 C -0.086 4.086 13 H 0.124 0.876 14 C -0.077 4.077 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.163 4.163 21 S 0.364 5.636 22 H 0.245 0.755 23 H 0.136 0.864 24 H -0.196 1.196 25 H -0.198 1.198 26 H 0.194 0.806 27 H 0.264 0.736 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.603 3.107 3.686 5.080 hybrid contribution -0.061 -1.195 -0.573 1.327 sum 1.541 1.912 3.113 3.965 Atomic orbital electron populations 1.86480 1.16997 1.82124 1.50257 1.24232 0.84881 1.09349 0.94278 0.94106 0.79059 0.75794 0.87385 1.25693 1.14912 0.98243 1.04442 1.21439 0.97171 0.93796 0.92348 1.66460 1.19874 1.34733 1.09497 1.24014 0.95205 0.93580 0.92648 1.44159 1.58279 1.12271 1.16555 1.22519 0.98191 0.82762 0.93144 0.87770 1.23636 0.98162 1.00276 0.96134 1.21293 0.94037 0.99550 0.93687 0.87601 1.19811 0.96175 0.94926 0.96744 1.21208 0.94591 0.98858 0.99685 1.21433 0.98230 0.99154 0.95936 1.21450 0.99979 0.94819 0.99386 1.21433 0.94800 0.99068 0.99541 1.21329 0.98374 0.98954 0.96154 1.23426 1.00318 0.98236 0.94326 1.83755 1.55182 1.10258 1.14361 0.75527 0.86447 1.19622 1.19764 0.80638 0.73588 0.91689 0.88989 0.84869 0.84765 0.85000 0.84926 0.85052 0.88413 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.32 12.88 -148.98 -1.92 -2.24 16 2 C -0.01 0.00 2.99 71.24 0.21 0.21 16 3 Si 0.73 -0.89 31.07 68.60 2.13 1.24 16 4 C -0.31 -0.57 5.73 24.57 0.14 -0.43 16 5 C 0.10 0.50 11.24 83.54 0.94 1.44 16 6 N -0.58 -3.83 9.83 -202.02 -1.99 -5.81 16 7 C 0.32 0.77 8.09 179.32 1.45 2.22 16 8 N -0.67 1.52 5.51 -327.89 -1.81 -0.28 16 9 C 0.14 -0.30 4.36 45.52 0.20 -0.10 16 10 H 0.10 0.16 7.66 -2.39 -0.02 0.14 16 11 C -0.14 0.28 7.25 31.12 0.23 0.50 16 12 C -0.07 0.19 3.98 -11.01 -0.04 0.15 16 13 H 0.11 -0.37 8.09 -2.39 -0.02 -0.38 16 14 C -0.08 0.00 5.29 -19.86 -0.11 -0.11 16 15 C -0.13 0.05 8.62 22.27 0.19 0.24 16 16 C -0.13 -0.04 10.05 22.27 0.22 0.19 16 17 C -0.14 -0.13 10.05 22.27 0.22 0.09 16 18 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 19 C -0.13 -0.12 9.71 22.27 0.22 0.10 16 20 C -0.12 0.60 7.30 31.12 0.23 0.82 16 21 S 0.11 -0.06 20.59 -56.49 -1.16 -1.23 16 22 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 23 H 0.12 0.07 7.96 -2.39 -0.02 0.06 16 24 H -0.27 -0.94 7.11 99.48 0.71 -0.23 16 25 H -0.27 -1.28 7.11 99.48 0.71 -0.57 16 26 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 27 H 0.42 -3.00 8.85 -92.70 -0.82 -3.82 16 28 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.09 -0.24 6.30 -2.38 -0.02 -0.25 16 30 H 0.13 -0.53 6.64 -2.91 -0.02 -0.55 16 31 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 32 H 0.13 -0.29 8.06 -2.91 -0.02 -0.32 16 33 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.13 -0.27 8.05 -2.91 -0.02 -0.29 16 35 H 0.10 -0.61 7.71 -2.39 -0.02 -0.63 16 36 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -13.06 317.27 -0.74 -13.80 By element: Atomic # 1 Polarization: -10.57 SS G_CDS: -0.32 Total: -10.89 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 4.32 Total: 5.41 kcal Atomic # 7 Polarization: -2.31 SS G_CDS: -3.79 Total: -6.10 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -1.92 Total: -2.24 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: 2.13 Total: 1.24 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.16 Total: -1.23 kcal Total: -13.06 -0.74 -13.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.902 kcal (2) G-P(sol) polarization free energy of solvation -13.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds