Wall clock time and date at job start Mon Mar 8 2021 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33324 * 125.95830 * 2 1 4 4 C 1.50700 * 122.70473 * 0.02562 * 3 2 1 5 5 O 1.42893 * 109.47526 * 44.95716 * 4 3 2 6 6 Si 1.86304 * 109.46962 * 164.96031 * 4 3 2 7 7 N 1.32119 * 114.58410 * 179.97438 * 3 2 1 8 8 C 1.29683 * 116.86513 * 0.02562 * 7 3 2 9 9 N 1.38611 * 124.95144 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00363 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.85172 * 23.80164 * 10 9 8 12 12 C 1.53780 * 113.61711 * 155.00183 * 10 9 8 13 13 C 1.53782 * 87.08339 * 140.06551 * 12 10 9 14 14 H 1.09003 * 113.61700 * 89.19569 * 13 12 10 15 15 C 1.50698 * 113.61615 * 220.01964 * 13 12 10 16 16 C 1.38234 * 120.00059 * 239.99819 * 15 13 12 17 17 C 1.38237 * 119.99897 * 179.97438 * 16 15 13 18 18 C 1.38236 * 119.99872 * 0.28610 * 17 16 15 19 19 C 1.38237 * 120.00142 * 359.49885 * 18 17 16 20 20 C 1.38235 * 119.99686 * 60.01689 * 15 13 12 21 21 C 1.53782 * 87.07949 * 334.56788 * 13 12 10 22 22 S 1.70969 * 110.10253 * 0.24519 * 8 7 3 23 23 H 1.09002 * 109.46775 * 84.24123 * 1 2 3 24 24 H 1.08999 * 109.47731 * 204.24179 * 1 2 3 25 25 H 1.09005 * 109.46836 * 324.24365 * 1 2 3 26 26 H 1.09004 * 109.47314 * 284.95672 * 4 3 2 27 27 H 0.96706 * 114.00445 * 179.97438 * 5 4 3 28 28 H 1.48502 * 109.99755 * 299.99526 * 6 4 3 29 29 H 1.48491 * 109.99967 * 61.31710 * 6 4 3 30 30 H 0.97003 * 119.99748 * 359.97438 * 9 8 7 31 31 H 1.08998 * 113.61433 * 25.51437 * 12 10 9 32 32 H 1.09000 * 113.61187 * 254.60902 * 12 10 9 33 33 H 1.07997 * 120.00191 * 0.02562 * 16 15 13 34 34 H 1.07996 * 120.00055 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.99752 * 179.72436 * 18 17 16 36 36 H 1.07997 * 120.00247 * 180.25532 * 19 18 17 37 37 H 1.07994 * 120.00609 * 359.97438 * 20 15 13 38 38 H 1.09002 * 113.61420 * 139.98606 * 21 13 12 39 39 H 1.09001 * 113.61312 * 270.88387 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.6806 2.5795 0.9529 6 14 3.0958 3.6784 0.4562 7 7 3.5851 0.8186 0.0005 8 6 3.9315 -0.4311 0.0005 9 7 5.2384 -0.8929 0.0005 10 6 5.5064 -2.3331 -0.0002 11 1 4.6804 -2.9172 -0.4060 12 6 6.8747 -2.7048 -0.5955 13 6 6.9915 -3.7492 0.5272 14 1 6.5728 -4.7209 0.2650 15 6 8.3742 -3.8481 1.1182 16 6 9.0651 -5.0442 1.0642 17 6 10.3337 -5.1347 1.6059 18 6 10.9090 -4.0307 2.2069 19 6 10.2199 -2.8334 2.2570 20 6 8.9515 -2.7428 1.7148 21 6 6.0347 -2.8639 1.3430 22 16 2.5412 -1.4262 -0.0072 23 1 -0.3633 0.1031 -1.0225 24 1 -0.3634 -0.9370 0.4219 25 1 -0.3633 0.8340 0.6005 26 1 1.3619 2.7251 -0.9921 27 1 0.2798 3.4579 1.0075 28 1 3.6218 3.3589 1.8077 29 1 4.1910 3.6104 -0.5443 30 1 5.9755 -0.2624 0.0001 31 1 7.6125 -1.9055 -0.5268 32 1 6.8131 -3.1408 -1.5927 33 1 8.6142 -5.9077 0.5980 34 1 10.8736 -6.0690 1.5633 35 1 11.8983 -4.1027 2.6341 36 1 10.6710 -1.9698 2.7228 37 1 8.4119 -1.8083 1.7569 38 1 5.2950 -3.4282 1.9109 39 1 6.5429 -2.1080 1.9417 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16147638_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:09 Heat of formation + Delta-G solvation = 68.606798 kcal Electronic energy + Delta-G solvation = -21469.587815 eV Core-core repulsion = 18278.100504 eV Total energy + Delta-G solvation = -3191.487311 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43242 -40.82546 -39.25675 -37.64024 -35.61470 -32.82526 -31.90277 -31.58040 -29.20410 -26.94197 -26.19642 -25.44594 -24.14445 -23.70156 -22.57875 -20.94579 -19.83036 -19.25480 -18.43133 -17.92359 -17.39608 -16.73369 -16.59296 -16.07756 -15.82466 -15.65377 -15.35581 -15.25884 -14.50560 -14.38175 -14.17281 -14.07282 -13.93451 -13.86261 -13.66882 -13.35303 -13.20682 -12.87042 -12.69327 -12.43267 -12.08124 -11.96561 -11.78358 -11.72362 -11.57227 -10.91189 -10.63831 -10.27003 -9.97235 -9.87444 -9.63776 -8.59383 -4.74977 0.05909 0.19775 0.36514 0.44591 0.80591 1.46933 1.80529 1.93278 1.97565 2.42175 2.75978 3.18553 3.24759 3.42006 3.51327 3.73093 3.86499 3.93766 3.99613 4.05195 4.16812 4.19188 4.30030 4.42598 4.44388 4.48306 4.52084 4.54744 4.63420 4.78558 4.79395 4.81540 4.93028 4.99771 5.06466 5.09480 5.20870 5.39993 5.51896 5.58462 5.61364 5.66018 6.04086 6.26007 6.65166 6.93320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.224 4.224 3 C 0.100 3.900 4 C -0.037 4.037 5 O -0.545 6.545 6 Si 0.712 3.288 7 N -0.550 5.550 8 C 0.320 3.680 9 N -0.684 5.684 10 C 0.126 3.874 11 H 0.110 0.890 12 C -0.131 4.131 13 C -0.069 4.069 14 H 0.105 0.895 15 C -0.071 4.071 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.148 4.148 22 S 0.103 5.897 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.386 0.614 28 H -0.261 1.261 29 H -0.256 1.256 30 H 0.412 0.588 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -0.105 -1.058 1.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.347 4.347 3 C -0.028 4.028 4 C -0.149 4.149 5 O -0.351 6.351 6 Si 0.613 3.387 7 N -0.277 5.277 8 C -0.051 4.051 9 N -0.323 5.323 10 C 0.021 3.979 11 H 0.127 0.873 12 C -0.170 4.170 13 C -0.088 4.088 14 H 0.123 0.877 15 C -0.072 4.072 16 C -0.133 4.133 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.135 4.135 21 C -0.187 4.187 22 S 0.352 5.648 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.234 0.766 28 H -0.187 1.187 29 H -0.182 1.182 30 H 0.250 0.750 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.443 -1.510 -0.776 1.754 hybrid contribution 0.111 0.324 -0.202 0.397 sum 0.554 -1.186 -0.977 1.634 Atomic orbital electron populations 1.20307 0.86440 1.03787 1.02811 1.25169 1.01431 0.92477 1.15590 1.18921 0.86345 0.95069 1.02508 1.24029 0.98703 0.96839 0.95368 1.86368 1.51211 1.36920 1.60635 0.96225 0.77548 0.84384 0.80592 1.65583 1.17302 1.16821 1.28005 1.23293 0.92077 0.91199 0.98554 1.44006 1.01633 1.06710 1.79965 1.22700 0.98134 0.79278 0.97824 0.87260 1.23451 0.95644 0.98791 0.99080 1.21316 0.92407 0.98820 0.96254 0.87687 1.19583 0.95193 0.93773 0.98607 1.21078 0.94964 0.97276 0.99966 1.21201 0.95476 0.98783 0.98083 1.21216 1.00133 0.93175 0.99546 1.21180 0.94857 0.97966 0.99542 1.20999 0.95515 0.98267 0.98767 1.23733 0.98838 0.99261 0.96852 1.83905 0.96368 1.10504 1.74068 0.91399 0.91927 0.88022 0.90270 0.76604 1.18660 1.18170 0.74988 0.88873 0.89847 0.85967 0.85907 0.85998 0.86002 0.86232 0.90197 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.11 9.97 36.00 0.36 0.25 16 2 C -0.22 -0.83 6.49 -36.02 -0.23 -1.07 16 3 C 0.10 0.48 6.03 -84.19 -0.51 -0.03 16 4 C -0.04 -0.06 2.72 36.01 0.10 0.03 16 5 O -0.54 -0.22 10.24 -35.23 -0.36 -0.58 16 6 Si 0.71 1.16 31.87 -169.99 -5.42 -4.26 16 7 N -0.55 -3.15 8.60 -11.36 -0.10 -3.24 16 8 C 0.32 1.18 8.24 -87.68 -0.72 0.45 16 9 N -0.68 -0.71 5.51 -54.99 -0.30 -1.01 16 10 C 0.13 -0.14 4.23 -67.12 -0.28 -0.42 16 11 H 0.11 -0.15 7.05 -51.93 -0.37 -0.52 16 12 C -0.13 0.25 7.30 -25.92 -0.19 0.06 16 13 C -0.07 0.11 3.98 -90.96 -0.36 -0.25 16 14 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 15 C -0.07 -0.01 5.29 -104.63 -0.55 -0.56 16 16 C -0.11 -0.04 9.71 -39.58 -0.38 -0.42 16 17 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 18 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 19 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 20 C -0.12 -0.05 8.61 -39.58 -0.34 -0.39 16 21 C -0.15 0.17 7.25 -25.92 -0.19 -0.01 16 22 S 0.10 0.25 21.68 -107.50 -2.33 -2.08 16 23 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 24 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 25 H 0.10 0.16 5.71 -51.93 -0.30 -0.14 16 26 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 27 H 0.39 -1.88 8.74 45.56 0.40 -1.48 16 28 H -0.26 -1.55 7.11 56.52 0.40 -1.14 16 29 H -0.26 -1.31 7.11 56.52 0.40 -0.91 16 30 H 0.41 0.21 8.85 -40.82 -0.36 -0.15 16 31 H 0.09 -0.16 7.70 -51.93 -0.40 -0.56 16 32 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.12 -0.16 8.05 -52.49 -0.42 -0.58 16 34 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 36 H 0.12 -0.09 8.06 -52.49 -0.42 -0.52 16 37 H 0.12 -0.08 6.66 -52.49 -0.35 -0.43 16 38 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.09 -0.06 6.31 -51.93 -0.33 -0.39 16 LS Contribution 333.96 15.07 5.03 5.03 Total: 0.00 -7.73 333.96 -13.10 -20.82 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: -5.12 Total: -10.91 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -4.50 Total: -3.77 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -0.40 Total: -4.25 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -0.36 Total: -0.58 kcal Atomic # 14 Polarization: 1.16 SS G_CDS: -5.42 Total: -4.26 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.33 Total: -2.08 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -7.73 -13.10 -20.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.430 kcal (2) G-P(sol) polarization free energy of solvation -7.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds