Wall clock time and date at job start Mon Mar 8 2021 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33324 * 125.95830 * 2 1 4 4 C 1.50700 * 122.70473 * 0.02562 * 3 2 1 5 5 O 1.42893 * 109.47526 * 44.95716 * 4 3 2 6 6 Si 1.86304 * 109.46962 * 164.96031 * 4 3 2 7 7 N 1.32119 * 114.58410 * 179.97438 * 3 2 1 8 8 C 1.29683 * 116.86513 * 0.02562 * 7 3 2 9 9 N 1.38611 * 124.95144 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00363 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.85172 * 23.80164 * 10 9 8 12 12 C 1.53780 * 113.61711 * 155.00183 * 10 9 8 13 13 C 1.53782 * 87.08339 * 140.06551 * 12 10 9 14 14 H 1.09003 * 113.61700 * 89.19569 * 13 12 10 15 15 C 1.50698 * 113.61615 * 220.01964 * 13 12 10 16 16 C 1.38234 * 120.00059 * 239.99819 * 15 13 12 17 17 C 1.38237 * 119.99897 * 179.97438 * 16 15 13 18 18 C 1.38236 * 119.99872 * 0.28610 * 17 16 15 19 19 C 1.38237 * 120.00142 * 359.49885 * 18 17 16 20 20 C 1.38235 * 119.99686 * 60.01689 * 15 13 12 21 21 C 1.53782 * 87.07949 * 334.56788 * 13 12 10 22 22 S 1.70969 * 110.10253 * 0.24519 * 8 7 3 23 23 H 1.09002 * 109.46775 * 84.24123 * 1 2 3 24 24 H 1.08999 * 109.47731 * 204.24179 * 1 2 3 25 25 H 1.09005 * 109.46836 * 324.24365 * 1 2 3 26 26 H 1.09004 * 109.47314 * 284.95672 * 4 3 2 27 27 H 0.96706 * 114.00445 * 179.97438 * 5 4 3 28 28 H 1.48502 * 109.99755 * 299.99526 * 6 4 3 29 29 H 1.48491 * 109.99967 * 61.31710 * 6 4 3 30 30 H 0.97003 * 119.99748 * 359.97438 * 9 8 7 31 31 H 1.08998 * 113.61433 * 25.51437 * 12 10 9 32 32 H 1.09000 * 113.61187 * 254.60902 * 12 10 9 33 33 H 1.07997 * 120.00191 * 0.02562 * 16 15 13 34 34 H 1.07996 * 120.00055 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.99752 * 179.72436 * 18 17 16 36 36 H 1.07997 * 120.00247 * 180.25532 * 19 18 17 37 37 H 1.07994 * 120.00609 * 359.97438 * 20 15 13 38 38 H 1.09002 * 113.61420 * 139.98606 * 21 13 12 39 39 H 1.09001 * 113.61312 * 270.88387 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.6806 2.5795 0.9529 6 14 3.0958 3.6784 0.4562 7 7 3.5851 0.8186 0.0005 8 6 3.9315 -0.4311 0.0005 9 7 5.2384 -0.8929 0.0005 10 6 5.5064 -2.3331 -0.0002 11 1 4.6804 -2.9172 -0.4060 12 6 6.8747 -2.7048 -0.5955 13 6 6.9915 -3.7492 0.5272 14 1 6.5728 -4.7209 0.2650 15 6 8.3742 -3.8481 1.1182 16 6 9.0651 -5.0442 1.0642 17 6 10.3337 -5.1347 1.6059 18 6 10.9090 -4.0307 2.2069 19 6 10.2199 -2.8334 2.2570 20 6 8.9515 -2.7428 1.7148 21 6 6.0347 -2.8639 1.3430 22 16 2.5412 -1.4262 -0.0072 23 1 -0.3633 0.1031 -1.0225 24 1 -0.3634 -0.9370 0.4219 25 1 -0.3633 0.8340 0.6005 26 1 1.3619 2.7251 -0.9921 27 1 0.2798 3.4579 1.0075 28 1 3.6218 3.3589 1.8077 29 1 4.1910 3.6104 -0.5443 30 1 5.9755 -0.2624 0.0001 31 1 7.6125 -1.9055 -0.5268 32 1 6.8131 -3.1408 -1.5927 33 1 8.6142 -5.9077 0.5980 34 1 10.8736 -6.0690 1.5633 35 1 11.8983 -4.1027 2.6341 36 1 10.6710 -1.9698 2.7228 37 1 8.4119 -1.8083 1.7569 38 1 5.2950 -3.4282 1.9109 39 1 6.5429 -2.1080 1.9417 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16147638_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:09 Heat of formation + Delta-G solvation = 73.329072 kcal Electronic energy + Delta-G solvation = -21469.383042 eV Core-core repulsion = 18278.100504 eV Total energy + Delta-G solvation = -3191.282537 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43434 -40.96516 -39.23852 -37.67539 -35.68106 -32.92796 -31.88977 -31.58829 -29.31251 -26.84403 -26.20290 -25.57028 -24.27666 -23.68325 -22.57629 -20.98042 -19.87798 -19.37521 -18.44935 -17.94689 -17.50484 -16.72090 -16.56930 -16.22302 -15.85420 -15.69948 -15.42482 -15.33014 -14.50007 -14.35380 -14.33297 -14.13611 -14.04943 -13.92866 -13.57839 -13.48113 -13.23335 -12.97871 -12.63581 -12.40464 -12.30581 -12.04281 -11.83620 -11.72010 -11.53328 -10.99268 -10.85579 -10.40259 -10.11233 -9.87738 -9.62567 -8.74566 -4.94280 -0.14577 0.01777 0.36929 0.44236 0.61329 1.31263 1.63385 1.73179 1.82306 2.21683 2.76908 3.15557 3.32064 3.49095 3.60256 3.82170 3.89593 3.95991 3.99911 4.06963 4.09995 4.23248 4.30872 4.37427 4.41035 4.54184 4.56952 4.62721 4.72406 4.77671 4.79839 4.88009 4.89931 5.01293 5.07166 5.11056 5.17865 5.33358 5.52986 5.56244 5.59133 5.68083 6.06667 6.14471 6.73965 6.93610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.238 4.238 3 C 0.071 3.929 4 C -0.036 4.036 5 O -0.554 6.554 6 Si 0.811 3.189 7 N -0.588 5.588 8 C 0.305 3.695 9 N -0.679 5.679 10 C 0.126 3.874 11 H 0.116 0.884 12 C -0.124 4.124 13 C -0.063 4.063 14 H 0.119 0.881 15 C -0.077 4.077 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.137 4.137 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.146 4.146 22 S 0.130 5.870 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.408 0.592 28 H -0.323 1.323 29 H -0.307 1.307 30 H 0.412 0.588 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -0.730 -1.586 2.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.361 4.361 3 C -0.057 4.057 4 C -0.148 4.148 5 O -0.364 6.364 6 Si 0.720 3.280 7 N -0.317 5.317 8 C -0.065 4.065 9 N -0.318 5.318 10 C 0.021 3.979 11 H 0.134 0.866 12 C -0.163 4.163 13 C -0.081 4.081 14 H 0.137 0.863 15 C -0.077 4.077 16 C -0.143 4.143 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.186 4.186 22 S 0.379 5.621 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.261 0.739 28 H -0.253 1.253 29 H -0.236 1.236 30 H 0.250 0.750 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.597 -2.120 -1.311 2.563 hybrid contribution 0.515 0.487 0.017 0.709 sum -0.082 -1.633 -1.294 2.085 Atomic orbital electron populations 1.20353 0.85012 1.04148 1.03552 1.25554 1.02599 0.92740 1.15234 1.19435 0.86361 0.96754 1.03177 1.24029 0.98964 0.95030 0.96823 1.86322 1.50663 1.39147 1.60269 0.95445 0.75446 0.82598 0.74544 1.65651 1.18297 1.18144 1.29575 1.23617 0.93254 0.91332 0.98330 1.44202 1.00899 1.07590 1.79147 1.22846 0.98777 0.78143 0.98157 0.86614 1.23410 0.94849 0.98569 0.99441 1.21327 0.91435 0.99443 0.95938 0.86268 1.19784 0.95883 0.93649 0.98433 1.21353 0.95072 0.97893 1.00003 1.21468 0.95856 0.99344 0.98024 1.21454 1.00809 0.93333 0.99871 1.21409 0.95219 0.98498 0.99900 1.21173 0.95675 0.98812 0.99012 1.23700 0.98928 0.99187 0.96740 1.83671 0.95219 1.09531 1.73687 0.90309 0.91291 0.87982 0.87961 0.73900 1.25320 1.23621 0.74995 0.89172 0.88946 0.84419 0.84593 0.84939 0.85195 0.85721 0.90034 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 9.97 71.24 0.71 0.56 16 2 C -0.24 -1.76 6.49 24.57 0.16 -1.60 16 3 C 0.07 0.72 6.03 41.40 0.25 0.97 16 4 C -0.04 -0.12 2.72 71.24 0.19 0.08 16 5 O -0.55 0.04 10.24 -148.98 -1.53 -1.49 16 6 Si 0.81 3.62 31.87 68.60 2.19 5.80 16 7 N -0.59 -7.53 8.60 -189.86 -1.63 -9.17 16 8 C 0.31 2.52 8.24 179.32 1.48 4.00 16 9 N -0.68 -1.98 5.51 -327.90 -1.81 -3.78 16 10 C 0.13 -0.27 4.23 45.52 0.19 -0.08 16 11 H 0.12 -0.39 7.05 -2.39 -0.02 -0.40 16 12 C -0.12 0.50 7.30 31.12 0.23 0.73 16 13 C -0.06 0.22 3.98 -11.01 -0.04 0.18 16 14 H 0.12 -0.75 8.09 -2.39 -0.02 -0.77 16 15 C -0.08 -0.02 5.29 -19.87 -0.11 -0.13 16 16 C -0.13 -0.05 9.71 22.27 0.22 0.17 16 17 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 18 C -0.14 -0.24 10.05 22.27 0.22 -0.02 16 19 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 20 C -0.13 -0.20 8.61 22.27 0.19 -0.01 16 21 C -0.15 0.33 7.25 31.12 0.23 0.56 16 22 S 0.13 0.63 21.68 -56.49 -1.22 -0.59 16 23 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.10 0.22 5.71 -2.38 -0.01 0.20 16 26 H 0.10 -0.15 7.96 -2.38 -0.02 -0.17 16 27 H 0.41 -4.62 8.74 -74.05 -0.65 -5.26 16 28 H -0.32 -4.77 7.11 99.48 0.71 -4.06 16 29 H -0.31 -3.89 7.11 99.48 0.71 -3.18 16 30 H 0.41 0.98 8.85 -92.71 -0.82 0.16 16 31 H 0.09 -0.28 7.70 -2.39 -0.02 -0.30 16 32 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.14 -0.48 8.05 -2.91 -0.02 -0.51 16 34 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 35 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 36 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.12 -0.05 6.66 -2.91 -0.02 -0.06 16 38 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.09 -0.04 6.31 -2.39 -0.02 -0.06 16 Total: 0.00 -19.65 333.96 0.01 -19.64 By element: Atomic # 1 Polarization: -15.48 SS G_CDS: -0.35 Total: -15.82 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 4.37 Total: 5.42 kcal Atomic # 7 Polarization: -9.51 SS G_CDS: -3.44 Total: -12.95 kcal Atomic # 8 Polarization: 0.04 SS G_CDS: -1.53 Total: -1.49 kcal Atomic # 14 Polarization: 3.62 SS G_CDS: 2.19 Total: 5.80 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.22 Total: -0.59 kcal Total: -19.65 0.01 -19.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.964 kcal (2) G-P(sol) polarization free energy of solvation -19.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds