Wall clock time and date at job start Mon Mar 8 2021 06:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86307 * 109.46669 * 2 1 4 4 C 1.50704 * 109.47203 * 119.99493 * 2 1 3 5 5 C 1.37980 * 120.32620 * 245.00545 * 4 2 1 6 6 N 1.32014 * 120.89890 * 179.97438 * 5 4 2 7 7 C 1.32331 * 121.64630 * 0.02562 * 6 5 4 8 8 N 1.39140 * 119.71637 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00191 * 0.02562 * 8 7 6 10 10 H 1.08994 * 112.85048 * 334.65893 * 9 8 7 11 11 C 1.53782 * 113.61792 * 105.85998 * 9 8 7 12 12 C 1.53953 * 87.01934 * 139.95014 * 11 9 8 13 13 H 1.09004 * 113.53305 * 89.19370 * 12 11 9 14 14 C 1.50700 * 113.74276 * 220.05207 * 12 11 9 15 15 C 1.38236 * 119.99778 * 37.32997 * 14 12 11 16 16 C 1.38241 * 120.00066 * 179.78403 * 15 14 12 17 17 C 1.38235 * 119.99681 * 0.46326 * 16 15 14 18 18 C 1.38234 * 119.99835 * 359.77025 * 17 16 15 19 19 C 1.38230 * 120.00421 * 0.02562 * 18 17 16 20 20 C 1.53775 * 87.11298 * 334.63564 * 12 11 9 21 21 C 1.39345 * 120.56748 * 0.02562 * 7 6 5 22 22 F 1.35092 * 120.47677 * 179.97438 * 21 7 6 23 23 C 1.38447 * 119.05156 * 359.97438 * 21 7 6 24 24 H 0.96697 * 114.00363 * 299.99851 * 1 2 3 25 25 H 1.08994 * 109.47513 * 239.99848 * 2 1 3 26 26 H 1.48502 * 109.99705 * 299.99691 * 3 2 1 27 27 H 1.48499 * 110.00238 * 61.31772 * 3 2 1 28 28 H 1.08004 * 119.55273 * 0.25198 * 5 4 2 29 29 H 0.97004 * 120.00158 * 180.02562 * 8 7 6 30 30 H 1.09001 * 113.60997 * 254.53051 * 11 9 8 31 31 H 1.09001 * 113.60981 * 25.42955 * 11 9 8 32 32 H 1.07998 * 120.00111 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.99937 * 180.25341 * 16 15 14 34 34 H 1.08000 * 119.99885 * 179.78925 * 17 16 15 35 35 H 1.08003 * 119.99516 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.00406 * 179.97438 * 19 18 17 37 37 H 1.08994 * 113.61830 * 270.80951 * 20 12 11 38 38 H 1.09009 * 113.68925 * 139.92055 * 20 12 11 39 39 H 1.08005 * 120.75425 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6381 -0.0199 2.1938 6 7 3.0830 -0.6307 3.2763 7 6 2.8721 -1.9209 3.4817 8 7 3.3588 -2.5239 4.6374 9 6 4.1005 -1.7308 5.6207 10 1 4.5812 -0.8559 5.1832 11 6 3.2964 -1.4197 6.8941 12 6 4.5950 -1.6763 7.6802 13 1 5.2103 -0.7855 7.8068 14 6 4.3858 -2.4308 8.9678 15 6 3.4443 -3.4409 9.0319 16 6 3.2555 -4.1361 10.2118 17 6 4.0014 -3.8146 11.3303 18 6 4.9395 -2.8012 11.2675 19 6 5.1313 -2.1089 10.0865 20 6 5.0364 -2.5685 6.5081 21 6 2.1670 -2.6808 2.5505 22 9 1.9533 -3.9978 2.7618 23 6 1.6885 -2.0667 1.4057 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8899 26 1 1.5614 2.4679 -1.2086 27 1 1.5878 2.4587 1.2242 28 1 2.8261 1.0355 2.0625 29 1 3.2070 -3.4694 4.7919 30 1 2.9480 -0.3883 6.9493 31 1 2.5097 -2.1450 7.1018 32 1 2.8590 -3.6897 8.1590 33 1 2.5228 -4.9280 10.2606 34 1 3.8515 -4.3554 12.2530 35 1 5.5220 -2.5498 12.1416 36 1 5.8639 -1.3169 10.0376 37 1 4.7263 -3.6085 6.6101 38 1 6.0906 -2.4644 6.2512 39 1 1.1388 -2.6294 0.6656 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16147638_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:12 Heat of formation + Delta-G solvation = 20.440544 kcal Electronic energy + Delta-G solvation = -23277.258156 eV Core-core repulsion = 19680.613597 eV Total energy + Delta-G solvation = -3596.644559 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.86266 -41.58000 -40.95814 -39.13992 -38.02218 -35.63095 -33.23022 -32.17443 -31.79590 -30.88419 -26.96928 -26.74856 -25.85953 -24.62096 -23.57931 -23.00621 -22.13760 -20.53018 -19.20774 -18.75007 -18.35926 -17.86100 -17.51287 -16.96360 -16.65940 -16.37608 -16.17240 -15.92668 -15.65208 -15.47940 -15.39718 -14.82758 -14.35072 -14.32543 -14.20640 -14.01717 -13.93939 -13.54187 -13.43684 -13.26842 -12.69487 -12.52144 -12.34301 -12.02894 -12.00853 -11.70613 -11.43077 -11.17336 -10.76393 -10.62463 -10.53055 -9.82720 -9.57739 -8.75839 -5.01477 -0.06127 0.12517 0.42278 0.49340 1.21317 1.53131 1.91724 1.97518 2.54678 2.82343 3.04900 3.24889 3.34774 3.43810 3.55795 3.64071 3.70464 3.83843 3.87450 3.97552 4.01628 4.09414 4.14175 4.23309 4.42895 4.46235 4.52967 4.58319 4.64010 4.67639 4.70469 4.76185 4.93325 4.95973 4.98468 5.08091 5.13918 5.19464 5.45107 5.56958 5.63139 5.71612 5.96379 6.09271 6.18460 6.35160 6.95782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.062 4.062 3 Si 0.684 3.316 4 C -0.208 4.208 5 C 0.147 3.853 6 N -0.512 5.512 7 C 0.391 3.609 8 N -0.706 5.706 9 C 0.136 3.864 10 H 0.121 0.879 11 C -0.146 4.146 12 C -0.070 4.070 13 H 0.103 0.897 14 C -0.070 4.070 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.138 4.138 21 C -0.021 4.021 22 F -0.134 7.134 23 C -0.037 4.037 24 H 0.376 0.624 25 H 0.120 0.880 26 H -0.254 1.254 27 H -0.256 1.256 28 H 0.163 0.837 29 H 0.412 0.588 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 0.806 0.834 2.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.172 4.172 3 Si 0.585 3.415 4 C -0.214 4.214 5 C -0.011 4.011 6 N -0.229 5.229 7 C 0.153 3.847 8 N -0.337 5.337 9 C 0.031 3.969 10 H 0.139 0.861 11 C -0.185 4.185 12 C -0.089 4.089 13 H 0.121 0.879 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.134 4.134 20 C -0.176 4.176 21 C -0.048 4.048 22 F -0.113 7.113 23 C -0.063 4.063 24 H 0.224 0.776 25 H 0.138 0.862 26 H -0.179 1.179 27 H -0.181 1.181 28 H 0.180 0.820 29 H 0.249 0.751 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.048 1.865 1.036 3.720 hybrid contribution -1.686 -1.389 0.133 2.189 sum 1.362 0.476 1.169 1.857 Atomic orbital electron populations 1.86615 1.17719 1.79943 1.49347 1.24830 0.83886 1.10828 0.97674 0.95069 0.91538 0.74269 0.80664 1.20849 1.05875 0.94540 1.00117 1.22403 0.91584 0.99537 0.87534 1.67300 1.25065 1.07259 1.23229 1.18477 0.90318 0.88993 0.86899 1.44633 1.58775 1.11872 1.18453 1.22537 0.92511 0.95502 0.86341 0.86100 1.23686 0.96796 1.02964 0.95079 1.21341 0.98461 0.98408 0.90676 0.87905 1.19641 0.96313 0.96388 0.94642 1.20997 0.98326 0.96211 0.98042 1.21174 0.99593 0.99707 0.93126 1.21201 0.96529 0.97884 0.98615 1.21192 0.98283 0.96145 0.97951 1.21083 0.99613 1.00055 0.92641 1.23474 1.00380 0.99271 0.94464 1.18015 1.08755 0.79542 0.98472 1.91489 1.93664 1.31215 1.94914 1.21290 0.95506 0.94444 0.95107 0.77598 0.86248 1.17868 1.18107 0.82007 0.75066 0.90554 0.89479 0.86243 0.86062 0.86072 0.85979 0.86004 0.89412 0.90197 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.25 12.84 -35.23 -0.45 -0.70 16 2 C -0.06 0.07 2.82 36.01 0.10 0.17 16 3 Si 0.68 -1.33 29.91 -169.99 -5.08 -6.42 16 4 C -0.21 0.07 5.36 -104.47 -0.56 -0.49 16 5 C 0.15 -0.02 9.83 -17.57 -0.17 -0.19 16 6 N -0.51 -0.74 9.15 -12.37 -0.11 -0.85 16 7 C 0.39 0.56 7.49 -154.86 -1.16 -0.60 16 8 N -0.71 0.09 5.51 -53.06 -0.29 -0.21 16 9 C 0.14 -0.13 4.24 -67.12 -0.28 -0.41 16 10 H 0.12 -0.03 7.45 -51.93 -0.39 -0.42 16 11 C -0.15 0.12 7.27 -25.83 -0.19 -0.06 16 12 C -0.07 0.08 3.97 -90.87 -0.36 -0.28 16 13 H 0.10 -0.19 8.09 -51.93 -0.42 -0.61 16 14 C -0.07 -0.03 5.29 -104.62 -0.55 -0.58 16 15 C -0.12 -0.06 8.63 -39.58 -0.34 -0.40 16 16 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 17 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 18 C -0.12 -0.08 10.05 -39.59 -0.40 -0.47 16 19 C -0.12 -0.06 9.71 -39.59 -0.38 -0.45 16 20 C -0.14 0.23 7.30 -25.92 -0.19 0.04 16 21 C -0.02 -0.03 7.35 -39.09 -0.29 -0.32 16 22 F -0.13 -0.29 16.65 2.25 0.04 -0.26 16 23 C -0.04 -0.02 9.82 -39.26 -0.39 -0.41 16 24 H 0.38 -0.85 8.70 45.56 0.40 -0.45 16 25 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 26 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 27 H -0.26 0.06 7.01 56.52 0.40 0.45 16 28 H 0.16 -0.36 4.84 -52.48 -0.25 -0.61 16 29 H 0.41 -0.44 8.18 -40.82 -0.33 -0.77 16 30 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 31 H 0.09 -0.04 6.32 -51.93 -0.33 -0.37 16 32 H 0.12 -0.09 6.66 -52.49 -0.35 -0.44 16 33 H 0.12 -0.10 8.06 -52.49 -0.42 -0.53 16 34 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 35 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 36 H 0.12 -0.12 8.05 -52.49 -0.42 -0.55 16 37 H 0.09 -0.14 7.70 -51.93 -0.40 -0.54 16 38 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 39 H 0.15 -0.04 8.06 -52.48 -0.42 -0.46 16 LS Contribution 329.88 15.07 4.97 4.97 Total: 0.00 -5.34 329.88 -11.54 -16.89 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -4.65 Total: -8.00 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -5.96 Total: -5.42 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -0.41 Total: -1.06 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -0.45 Total: -0.70 kcal Atomic # 9 Polarization: -0.29 SS G_CDS: 0.04 Total: -0.26 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -5.08 Total: -6.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -5.34 -11.54 -16.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.329 kcal (2) G-P(sol) polarization free energy of solvation -5.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds