Wall clock time and date at job start Mon Mar 8 2021 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86307 * 109.46669 * 2 1 4 4 C 1.50704 * 109.47203 * 119.99493 * 2 1 3 5 5 C 1.37980 * 120.32620 * 245.00545 * 4 2 1 6 6 N 1.32014 * 120.89890 * 179.97438 * 5 4 2 7 7 C 1.32331 * 121.64630 * 0.02562 * 6 5 4 8 8 N 1.39140 * 119.71637 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00191 * 0.02562 * 8 7 6 10 10 H 1.08994 * 112.85048 * 334.65893 * 9 8 7 11 11 C 1.53782 * 113.61792 * 105.85998 * 9 8 7 12 12 C 1.53953 * 87.01934 * 139.95014 * 11 9 8 13 13 H 1.09004 * 113.53305 * 89.19370 * 12 11 9 14 14 C 1.50700 * 113.74276 * 220.05207 * 12 11 9 15 15 C 1.38236 * 119.99778 * 37.32997 * 14 12 11 16 16 C 1.38241 * 120.00066 * 179.78403 * 15 14 12 17 17 C 1.38235 * 119.99681 * 0.46326 * 16 15 14 18 18 C 1.38234 * 119.99835 * 359.77025 * 17 16 15 19 19 C 1.38230 * 120.00421 * 0.02562 * 18 17 16 20 20 C 1.53775 * 87.11298 * 334.63564 * 12 11 9 21 21 C 1.39345 * 120.56748 * 0.02562 * 7 6 5 22 22 F 1.35092 * 120.47677 * 179.97438 * 21 7 6 23 23 C 1.38447 * 119.05156 * 359.97438 * 21 7 6 24 24 H 0.96697 * 114.00363 * 299.99851 * 1 2 3 25 25 H 1.08994 * 109.47513 * 239.99848 * 2 1 3 26 26 H 1.48502 * 109.99705 * 299.99691 * 3 2 1 27 27 H 1.48499 * 110.00238 * 61.31772 * 3 2 1 28 28 H 1.08004 * 119.55273 * 0.25198 * 5 4 2 29 29 H 0.97004 * 120.00158 * 180.02562 * 8 7 6 30 30 H 1.09001 * 113.60997 * 254.53051 * 11 9 8 31 31 H 1.09001 * 113.60981 * 25.42955 * 11 9 8 32 32 H 1.07998 * 120.00111 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.99937 * 180.25341 * 16 15 14 34 34 H 1.08000 * 119.99885 * 179.78925 * 17 16 15 35 35 H 1.08003 * 119.99516 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.00406 * 179.97438 * 19 18 17 37 37 H 1.08994 * 113.61830 * 270.80951 * 20 12 11 38 38 H 1.09009 * 113.68925 * 139.92055 * 20 12 11 39 39 H 1.08005 * 120.75425 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6381 -0.0199 2.1938 6 7 3.0830 -0.6307 3.2763 7 6 2.8721 -1.9209 3.4817 8 7 3.3588 -2.5239 4.6374 9 6 4.1005 -1.7308 5.6207 10 1 4.5812 -0.8559 5.1832 11 6 3.2964 -1.4197 6.8941 12 6 4.5950 -1.6763 7.6802 13 1 5.2103 -0.7855 7.8068 14 6 4.3858 -2.4308 8.9678 15 6 3.4443 -3.4409 9.0319 16 6 3.2555 -4.1361 10.2118 17 6 4.0014 -3.8146 11.3303 18 6 4.9395 -2.8012 11.2675 19 6 5.1313 -2.1089 10.0865 20 6 5.0364 -2.5685 6.5081 21 6 2.1670 -2.6808 2.5505 22 9 1.9533 -3.9978 2.7618 23 6 1.6885 -2.0667 1.4057 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8899 26 1 1.5614 2.4679 -1.2086 27 1 1.5878 2.4587 1.2242 28 1 2.8261 1.0355 2.0625 29 1 3.2070 -3.4694 4.7919 30 1 2.9480 -0.3883 6.9493 31 1 2.5097 -2.1450 7.1018 32 1 2.8590 -3.6897 8.1590 33 1 2.5228 -4.9280 10.2606 34 1 3.8515 -4.3554 12.2530 35 1 5.5220 -2.5498 12.1416 36 1 5.8639 -1.3169 10.0376 37 1 4.7263 -3.6085 6.6101 38 1 6.0906 -2.4644 6.2512 39 1 1.1388 -2.6294 0.6656 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16147638_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:31:11 Heat of formation + Delta-G solvation = 27.319423 kcal Electronic energy + Delta-G solvation = -23276.959865 eV Core-core repulsion = 19680.613597 eV Total energy + Delta-G solvation = -3596.346269 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.96325 -41.56985 -40.92901 -39.10629 -38.00031 -35.61359 -33.25110 -32.16223 -31.78147 -30.87450 -26.93256 -26.67025 -25.83098 -24.62414 -23.56543 -23.00890 -22.11572 -20.47957 -19.19929 -18.74148 -18.37703 -17.85405 -17.52458 -17.02598 -16.61103 -16.33933 -16.13832 -15.90318 -15.63029 -15.49622 -15.38801 -14.84337 -14.34605 -14.29622 -14.20126 -14.01309 -13.93704 -13.45836 -13.44958 -13.24328 -12.66136 -12.46818 -12.29507 -12.04827 -11.96219 -11.65010 -11.37773 -11.14146 -10.74881 -10.64555 -10.53260 -9.83354 -9.57079 -8.76029 -4.88125 -0.08461 0.10253 0.42175 0.48640 1.32253 1.63065 1.99471 2.00432 2.52716 2.82596 3.02502 3.27356 3.43924 3.51308 3.60600 3.71094 3.77012 3.85254 3.94223 4.00275 4.05841 4.13446 4.19919 4.28213 4.44392 4.52511 4.57723 4.61874 4.71284 4.73712 4.74733 4.84040 4.98433 5.00985 5.03075 5.11519 5.17043 5.23739 5.47282 5.57683 5.63011 5.73364 5.99485 6.11397 6.19747 6.50446 6.95375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.068 4.068 3 Si 0.766 3.234 4 C -0.203 4.203 5 C 0.146 3.854 6 N -0.525 5.525 7 C 0.383 3.617 8 N -0.703 5.703 9 C 0.139 3.861 10 H 0.117 0.883 11 C -0.144 4.144 12 C -0.065 4.065 13 H 0.112 0.888 14 C -0.077 4.077 15 C -0.128 4.128 16 C -0.131 4.131 17 C -0.138 4.138 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.039 4.039 22 F -0.141 7.141 23 C -0.040 4.040 24 H 0.386 0.614 25 H 0.129 0.871 26 H -0.301 1.301 27 H -0.275 1.275 28 H 0.182 0.818 29 H 0.415 0.585 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 1.148 0.808 3.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.178 4.178 3 Si 0.671 3.329 4 C -0.209 4.209 5 C -0.011 4.011 6 N -0.242 5.242 7 C 0.144 3.856 8 N -0.335 5.335 9 C 0.034 3.966 10 H 0.135 0.865 11 C -0.183 4.183 12 C -0.084 4.084 13 H 0.130 0.870 14 C -0.077 4.077 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.168 4.168 21 C -0.065 4.065 22 F -0.121 7.121 23 C -0.066 4.066 24 H 0.236 0.764 25 H 0.146 0.854 26 H -0.229 1.229 27 H -0.201 1.201 28 H 0.199 0.801 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.546 2.179 1.033 4.289 hybrid contribution -1.879 -1.464 0.117 2.385 sum 1.667 0.715 1.150 2.148 Atomic orbital electron populations 1.86588 1.18576 1.80376 1.50191 1.25052 0.83294 1.11737 0.97682 0.94116 0.90159 0.71703 0.76902 1.20890 1.05555 0.94141 1.00282 1.22744 0.90960 1.00345 0.87029 1.67346 1.25660 1.07286 1.23940 1.18619 0.90482 0.89170 0.87302 1.44690 1.58540 1.12094 1.18178 1.22511 0.92531 0.95469 0.86063 0.86517 1.23641 0.96879 1.02487 0.95260 1.21341 0.98327 0.98645 0.90090 0.87037 1.19838 0.96198 0.96435 0.95215 1.21184 0.98613 0.96390 0.98388 1.21418 1.00001 1.00181 0.93314 1.21447 0.96717 0.98238 0.99208 1.21451 0.98499 0.96202 0.98594 1.21343 1.00036 1.00511 0.92716 1.23417 1.00494 0.99076 0.93791 1.18159 1.09798 0.79401 0.99191 1.91462 1.93834 1.31732 1.95030 1.21449 0.95296 0.94964 0.94923 0.76436 0.85367 1.22938 1.20148 0.80130 0.74710 0.91078 0.89885 0.85459 0.85019 0.84961 0.84727 0.84706 0.89402 0.89634 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.40 12.84 -148.98 -1.91 -2.31 16 2 C -0.07 0.19 2.82 71.24 0.20 0.39 16 3 Si 0.77 -3.38 29.91 68.60 2.05 -1.32 16 4 C -0.20 0.22 5.36 -19.77 -0.11 0.12 16 5 C 0.15 -0.12 9.83 84.60 0.83 0.71 16 6 N -0.53 -1.45 9.15 -193.03 -1.77 -3.22 16 7 C 0.38 1.23 7.49 133.09 1.00 2.22 16 8 N -0.70 -0.08 5.51 -321.80 -1.77 -1.85 16 9 C 0.14 -0.25 4.24 45.52 0.19 -0.06 16 10 H 0.12 -0.07 7.45 -2.39 -0.02 -0.09 16 11 C -0.14 0.21 7.27 31.18 0.23 0.44 16 12 C -0.07 0.16 3.97 -10.96 -0.04 0.12 16 13 H 0.11 -0.47 8.09 -2.39 -0.02 -0.49 16 14 C -0.08 -0.07 5.29 -19.87 -0.11 -0.17 16 15 C -0.13 -0.17 8.63 22.27 0.19 0.02 16 16 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 17 C -0.14 -0.24 10.05 22.27 0.22 -0.02 16 18 C -0.13 -0.18 10.05 22.27 0.22 0.04 16 19 C -0.13 -0.14 9.71 22.27 0.22 0.08 16 20 C -0.13 0.45 7.30 31.12 0.23 0.68 16 21 C -0.04 -0.14 7.35 22.59 0.17 0.02 16 22 F -0.14 -0.74 16.65 44.97 0.75 0.01 16 23 C -0.04 -0.05 9.82 22.48 0.22 0.17 16 24 H 0.39 -1.81 8.70 -74.06 -0.64 -2.46 16 25 H 0.13 -0.59 7.96 -2.39 -0.02 -0.61 16 26 H -0.30 -1.12 7.11 99.48 0.71 -0.41 16 27 H -0.28 0.34 7.01 99.48 0.70 1.04 16 28 H 0.18 -1.00 4.84 -2.91 -0.01 -1.02 16 29 H 0.41 -0.66 8.18 -92.71 -0.76 -1.42 16 30 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.08 -0.05 6.32 -2.39 -0.02 -0.06 16 32 H 0.13 -0.14 6.66 -2.91 -0.02 -0.16 16 33 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 35 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 36 H 0.14 -0.32 8.05 -2.91 -0.02 -0.35 16 37 H 0.09 -0.29 7.70 -2.39 -0.02 -0.30 16 38 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 39 H 0.15 -0.05 8.06 -2.91 -0.02 -0.07 16 Total: 0.00 -12.46 329.88 0.96 -11.51 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: -0.28 Total: -7.56 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 3.89 Total: 4.75 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -3.54 Total: -5.07 kcal Atomic # 8 Polarization: -0.40 SS G_CDS: -1.91 Total: -2.31 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.75 Total: 0.01 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.05 Total: -1.32 kcal Total: -12.46 0.96 -11.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16147638_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.826 kcal (2) G-P(sol) polarization free energy of solvation -12.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds