Wall clock time and date at job start Mon Mar 8 2021 08:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 C 1.52995 * 113.61503 * 219.89414 * 6 5 3 9 9 C 1.52998 * 109.47304 * 184.99857 * 8 6 5 10 10 N 1.46498 * 109.47351 * 179.97438 * 9 8 6 11 11 C 1.38409 * 120.00209 * 179.97438 * 10 9 8 12 12 N 1.32495 * 119.21190 * 359.74093 * 11 10 9 13 13 C 1.32282 * 120.73637 * 179.71793 * 12 11 10 14 14 C 1.38606 * 119.19303 * 0.53612 * 13 12 11 15 15 C 1.50709 * 120.71716 * 179.75529 * 14 13 12 16 16 O 1.42894 * 109.47013 * 244.97888 * 15 14 13 17 17 Si 1.86298 * 109.47067 * 4.98172 * 15 14 13 18 18 C 1.38601 * 118.56352 * 359.73888 * 14 13 12 19 19 N 1.32272 * 119.19449 * 359.97438 * 18 14 13 20 20 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 21 21 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 22 22 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 24 24 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 25 25 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 26 26 H 1.09000 * 109.47188 * 305.00387 * 8 6 5 27 27 H 1.09001 * 109.47254 * 65.00150 * 8 6 5 28 28 H 1.09000 * 109.47431 * 300.00381 * 9 8 6 29 29 H 1.09004 * 109.47047 * 60.00378 * 9 8 6 30 30 H 0.96994 * 120.00230 * 0.02562 * 10 9 8 31 31 H 1.08002 * 120.40400 * 180.25203 * 13 12 11 32 32 H 1.08997 * 109.46852 * 124.97898 * 15 14 13 33 33 H 0.96700 * 114.00082 * 179.97438 * 16 15 14 34 34 H 1.48503 * 109.99974 * 178.68137 * 17 15 14 35 35 H 1.48500 * 110.00166 * 299.99608 * 17 15 14 36 36 H 1.08000 * 120.40008 * 179.97438 * 18 14 13 37 37 H 1.09005 * 113.61471 * 139.98321 * 20 6 5 38 38 H 1.08996 * 113.61178 * 270.79663 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 6 5.2577 2.0707 -0.8953 9 6 5.6475 3.1376 -1.9204 10 7 7.0199 2.9001 -2.3745 11 6 7.5949 3.7428 -3.3099 12 7 6.8882 4.7564 -3.7880 13 6 7.4098 5.5837 -4.6788 14 6 8.7071 5.3728 -5.1189 15 6 9.3334 6.2908 -6.1370 16 8 9.5904 5.5634 -7.3398 17 14 8.1710 7.7006 -6.5001 18 6 9.4160 4.2998 -4.6022 19 7 8.8372 3.5138 -3.7095 20 6 2.7569 1.6507 -1.3025 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.9088 0.4212 0.7139 25 1 3.3381 1.8458 1.6855 26 1 5.9363 2.1199 -0.0437 27 1 5.3224 1.0845 -1.3549 28 1 4.9689 3.0884 -2.7719 29 1 5.5829 4.1239 -1.4608 30 1 7.5254 2.1519 -2.0203 31 1 6.8303 6.4106 -5.0619 32 1 10.2704 6.6846 -5.7433 33 1 9.9940 6.0929 -8.0411 34 1 8.7901 8.6301 -7.4789 35 1 6.8896 7.1769 -7.0376 36 1 10.4287 4.1077 -4.9246 37 1 2.2186 2.3501 -1.9422 38 1 3.1214 0.7772 -1.8430 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16488026_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:12 Heat of formation + Delta-G solvation = 6.983964 kcal Electronic energy + Delta-G solvation = -19412.877431 eV Core-core repulsion = 16258.362166 eV Total energy + Delta-G solvation = -3154.515265 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96080 -40.58640 -38.31216 -37.67449 -36.64307 -34.61558 -33.29955 -31.08382 -27.80592 -26.84987 -26.60665 -25.90558 -24.75780 -22.88586 -22.54275 -20.64031 -19.29746 -18.69356 -18.38625 -17.60818 -16.72917 -16.62656 -16.54518 -16.09768 -16.03349 -15.55918 -15.49912 -15.36566 -14.95327 -14.50514 -13.94636 -13.65076 -13.55564 -13.41507 -13.31653 -13.05459 -12.55403 -12.33635 -12.21116 -11.80512 -11.74346 -11.70763 -11.50263 -11.35657 -11.13813 -10.67478 -10.40361 -9.93147 -9.02051 -5.03261 0.15082 0.25861 1.21817 1.52758 1.88602 1.89559 2.84886 2.86066 3.20416 3.34864 3.43918 3.57266 3.68284 3.74765 3.79051 3.85742 3.89697 4.03250 4.16627 4.23158 4.27266 4.40638 4.46447 4.50134 4.54577 4.62004 4.76489 4.80122 4.80643 4.84467 4.92626 4.97226 5.06362 5.20033 5.29625 5.37576 5.84436 6.08628 6.28992 6.38608 6.49744 7.38165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.088 0.912 5 C -0.132 4.132 6 C -0.105 4.105 7 H 0.097 0.903 8 C -0.120 4.120 9 C 0.137 3.863 10 N -0.697 5.697 11 C 0.566 3.434 12 N -0.562 5.562 13 C 0.201 3.799 14 C -0.248 4.248 15 C -0.054 4.054 16 O -0.538 6.538 17 Si 0.676 3.324 18 C 0.224 3.776 19 N -0.570 5.570 20 C -0.152 4.152 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.042 0.958 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.415 0.585 31 H 0.167 0.833 32 H 0.078 0.922 33 H 0.381 0.619 34 H -0.257 1.257 35 H -0.252 1.252 36 H 0.169 0.831 37 H 0.070 0.930 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 3.390 1.799 3.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.000 4.000 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.124 4.124 7 H 0.115 0.885 8 C -0.158 4.158 9 C 0.013 3.987 10 N -0.333 5.333 11 C 0.210 3.790 12 N -0.284 5.284 13 C 0.033 3.967 14 C -0.256 4.256 15 C -0.165 4.165 16 O -0.345 6.345 17 Si 0.577 3.423 18 C 0.056 3.944 19 N -0.292 5.292 20 C -0.190 4.190 21 H 0.060 0.940 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.252 0.748 31 H 0.183 0.817 32 H 0.096 0.904 33 H 0.229 0.771 34 H -0.182 1.182 35 H -0.177 1.177 36 H 0.186 0.814 37 H 0.089 0.911 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.811 2.549 2.316 3.891 hybrid contribution 1.070 0.158 -1.539 1.881 sum -0.741 2.707 0.778 2.912 Atomic orbital electron populations 1.22807 0.81032 1.02933 0.99982 1.87949 1.19779 1.27358 1.94575 1.23770 0.93927 0.85353 0.96914 0.89455 1.23281 0.95378 1.00309 0.97947 1.22201 0.93524 0.99596 0.97033 0.88483 1.21750 0.96375 0.99065 0.98634 1.21361 0.80915 0.98990 0.97445 1.44186 1.15540 1.30679 1.42926 1.19390 0.85409 0.86765 0.87467 1.67953 1.37734 1.06707 1.16006 1.22767 0.90823 0.94370 0.88715 1.20600 0.97756 1.02834 1.04415 1.24403 1.05675 1.00667 0.85747 1.86594 1.84099 1.39495 1.24335 0.95251 0.79237 0.78305 0.89481 1.22794 0.98991 0.86345 0.86313 1.67974 1.10927 1.32328 1.17950 1.23661 0.97338 1.00932 0.97048 0.93971 0.89598 0.93955 0.88950 0.90798 0.90764 0.90841 0.91307 0.91261 0.74789 0.81688 0.90415 0.77099 1.18200 1.17709 0.81405 0.91118 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.83 10.72 -35.23 -0.38 -1.21 16 3 C 0.06 0.00 4.32 -25.77 -0.11 -0.11 16 4 H 0.09 -0.10 7.87 -51.93 -0.41 -0.51 16 5 C -0.13 0.11 7.46 -25.92 -0.19 -0.09 16 6 C -0.10 0.18 3.65 -89.81 -0.33 -0.15 16 7 H 0.10 -0.22 8.13 -51.93 -0.42 -0.65 16 8 C -0.12 0.22 5.17 -26.73 -0.14 0.08 16 9 C 0.14 -0.04 5.64 -4.04 -0.02 -0.07 16 10 N -0.70 -0.87 5.70 -62.31 -0.36 -1.22 16 11 C 0.57 2.04 8.43 -322.80 -2.72 -0.68 16 12 N -0.56 -1.94 9.59 -13.93 -0.13 -2.08 16 13 C 0.20 0.35 9.92 -17.22 -0.17 0.18 16 14 C -0.25 -0.34 5.40 -104.35 -0.56 -0.90 16 15 C -0.05 0.04 2.82 36.01 0.10 0.14 16 16 O -0.54 -0.26 12.82 -35.23 -0.45 -0.71 16 17 Si 0.68 -1.09 29.92 -169.99 -5.09 -6.18 16 18 C 0.22 0.49 10.99 -17.23 -0.19 0.30 16 19 N -0.57 -2.19 10.46 -13.93 -0.15 -2.34 16 20 C -0.15 0.09 7.48 -25.78 -0.19 -0.10 16 21 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 22 H 0.09 -0.08 8.14 -51.93 -0.42 -0.51 16 23 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.09 -0.01 8.10 -51.93 -0.42 -0.43 16 25 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 26 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 27 H 0.07 -0.11 7.85 -51.93 -0.41 -0.52 16 28 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.41 0.00 8.59 -40.82 -0.35 -0.35 16 31 H 0.17 -0.12 5.04 -52.49 -0.26 -0.38 16 32 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 33 H 0.38 -1.33 8.74 45.56 0.40 -0.94 16 34 H -0.26 -0.10 7.11 56.52 0.40 0.30 16 35 H -0.25 -0.37 7.06 56.52 0.40 0.03 16 36 H 0.17 0.00 8.06 -52.49 -0.42 -0.43 16 37 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.09 0.03 7.90 -51.93 -0.41 -0.38 16 LS Contribution 318.87 15.07 4.81 4.81 Total: 0.00 -7.05 318.87 -10.88 -17.93 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -5.70 Total: -8.70 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.43 Total: -0.30 kcal Atomic # 7 Polarization: -5.00 SS G_CDS: -0.63 Total: -5.64 kcal Atomic # 8 Polarization: -1.09 SS G_CDS: -0.83 Total: -1.92 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: -5.09 Total: -6.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -7.05 -10.88 -17.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16488026_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.911 kcal (2) G-P(sol) polarization free energy of solvation -7.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds