Wall clock time and date at job start Mon Mar 8 2021 08:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 C 1.52995 * 113.61503 * 219.89414 * 6 5 3 9 9 C 1.52998 * 109.47304 * 184.99857 * 8 6 5 10 10 N 1.46498 * 109.47351 * 179.97438 * 9 8 6 11 11 C 1.38409 * 120.00209 * 179.97438 * 10 9 8 12 12 N 1.32495 * 119.21190 * 359.74093 * 11 10 9 13 13 C 1.32282 * 120.73637 * 179.71793 * 12 11 10 14 14 C 1.38606 * 119.19303 * 0.53612 * 13 12 11 15 15 C 1.50709 * 120.71716 * 179.75529 * 14 13 12 16 16 O 1.42894 * 109.47013 * 244.97888 * 15 14 13 17 17 Si 1.86298 * 109.47067 * 4.98172 * 15 14 13 18 18 C 1.38601 * 118.56352 * 359.73888 * 14 13 12 19 19 N 1.32272 * 119.19449 * 359.97438 * 18 14 13 20 20 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 21 21 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 22 22 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 24 24 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 25 25 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 26 26 H 1.09000 * 109.47188 * 305.00387 * 8 6 5 27 27 H 1.09001 * 109.47254 * 65.00150 * 8 6 5 28 28 H 1.09000 * 109.47431 * 300.00381 * 9 8 6 29 29 H 1.09004 * 109.47047 * 60.00378 * 9 8 6 30 30 H 0.96994 * 120.00230 * 0.02562 * 10 9 8 31 31 H 1.08002 * 120.40400 * 180.25203 * 13 12 11 32 32 H 1.08997 * 109.46852 * 124.97898 * 15 14 13 33 33 H 0.96700 * 114.00082 * 179.97438 * 16 15 14 34 34 H 1.48503 * 109.99974 * 178.68137 * 17 15 14 35 35 H 1.48500 * 110.00166 * 299.99608 * 17 15 14 36 36 H 1.08000 * 120.40008 * 179.97438 * 18 14 13 37 37 H 1.09005 * 113.61471 * 139.98321 * 20 6 5 38 38 H 1.08996 * 113.61178 * 270.79663 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 6 5.2577 2.0707 -0.8953 9 6 5.6475 3.1376 -1.9204 10 7 7.0199 2.9001 -2.3745 11 6 7.5949 3.7428 -3.3099 12 7 6.8882 4.7564 -3.7880 13 6 7.4098 5.5837 -4.6788 14 6 8.7071 5.3728 -5.1189 15 6 9.3334 6.2908 -6.1370 16 8 9.5904 5.5634 -7.3398 17 14 8.1710 7.7006 -6.5001 18 6 9.4160 4.2998 -4.6022 19 7 8.8372 3.5138 -3.7095 20 6 2.7569 1.6507 -1.3025 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.9088 0.4212 0.7139 25 1 3.3381 1.8458 1.6855 26 1 5.9363 2.1199 -0.0437 27 1 5.3224 1.0845 -1.3549 28 1 4.9689 3.0884 -2.7719 29 1 5.5829 4.1239 -1.4608 30 1 7.5254 2.1519 -2.0203 31 1 6.8303 6.4106 -5.0619 32 1 10.2704 6.6846 -5.7433 33 1 9.9940 6.0929 -8.0411 34 1 8.7901 8.6301 -7.4789 35 1 6.8896 7.1769 -7.0376 36 1 10.4287 4.1077 -4.9246 37 1 2.2186 2.3501 -1.9422 38 1 3.1214 0.7772 -1.8430 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16488026_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:11 Heat of formation + Delta-G solvation = 9.227300 kcal Electronic energy + Delta-G solvation = -19412.780152 eV Core-core repulsion = 16258.362166 eV Total energy + Delta-G solvation = -3154.417986 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08046 -40.54493 -38.31649 -37.67662 -36.67590 -34.76440 -33.34044 -31.09052 -27.78355 -26.83342 -26.58306 -26.00257 -24.76889 -22.96056 -22.50987 -20.57706 -19.38461 -18.73527 -18.40603 -17.60174 -16.70930 -16.64645 -16.57330 -16.11232 -16.06206 -15.57951 -15.55272 -15.38111 -14.95729 -14.57975 -13.94203 -13.59415 -13.51968 -13.38027 -13.33893 -13.01656 -12.50566 -12.31792 -12.24766 -11.92347 -11.78015 -11.72735 -11.44905 -11.34207 -11.13003 -10.65427 -10.40195 -10.04508 -9.11113 -4.91297 0.03020 0.12590 1.31200 1.60992 1.82396 1.96574 2.74209 2.89337 3.13172 3.41394 3.49995 3.63432 3.64543 3.71765 3.82996 3.90077 3.91579 4.09259 4.17350 4.29241 4.32339 4.47590 4.52857 4.57139 4.63630 4.66525 4.76642 4.82533 4.84121 4.87199 4.98240 5.01533 5.11791 5.23572 5.28886 5.46795 5.73733 6.01754 6.31457 6.38179 6.64159 7.25104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.050 3.950 4 H 0.099 0.901 5 C -0.131 4.131 6 C -0.094 4.094 7 H 0.108 0.892 8 C -0.111 4.111 9 C 0.143 3.857 10 N -0.694 5.694 11 C 0.549 3.451 12 N -0.578 5.578 13 C 0.191 3.809 14 C -0.249 4.249 15 C -0.060 4.060 16 O -0.560 6.560 17 Si 0.755 3.245 18 C 0.212 3.788 19 N -0.591 5.591 20 C -0.153 4.153 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.419 0.581 31 H 0.184 0.816 32 H 0.104 0.896 33 H 0.397 0.603 34 H -0.281 1.281 35 H -0.296 1.296 36 H 0.186 0.814 37 H 0.073 0.927 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 4.246 2.027 4.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.008 4.008 4 H 0.117 0.883 5 C -0.169 4.169 6 C -0.113 4.113 7 H 0.126 0.874 8 C -0.148 4.148 9 C 0.019 3.981 10 N -0.331 5.331 11 C 0.192 3.808 12 N -0.301 5.301 13 C 0.024 3.976 14 C -0.257 4.257 15 C -0.170 4.170 16 O -0.370 6.370 17 Si 0.660 3.340 18 C 0.045 3.955 19 N -0.313 5.313 20 C -0.191 4.191 21 H 0.066 0.934 22 H 0.108 0.892 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.257 0.743 31 H 0.201 0.799 32 H 0.121 0.879 33 H 0.248 0.752 34 H -0.207 1.207 35 H -0.224 1.224 36 H 0.203 0.797 37 H 0.092 0.908 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.430 3.407 2.552 4.491 hybrid contribution 0.945 -0.106 -1.674 1.925 sum -0.485 3.301 0.879 3.450 Atomic orbital electron populations 1.22925 0.80098 1.03495 1.00680 1.87910 1.21028 1.28709 1.94756 1.23975 0.94432 0.84971 0.97378 0.88272 1.23267 0.94882 1.00136 0.98574 1.22165 0.93085 0.99947 0.96143 0.87358 1.21663 0.96486 0.98305 0.98389 1.21335 0.80058 0.99416 0.97255 1.44292 1.15941 1.30435 1.42433 1.19675 0.85696 0.87321 0.88127 1.67975 1.38174 1.07174 1.16803 1.23154 0.91357 0.94635 0.88418 1.20824 0.97529 1.02810 1.04528 1.24590 1.07164 1.00069 0.85159 1.86545 1.84504 1.40785 1.25208 0.94338 0.75643 0.76144 0.87833 1.23186 0.99832 0.86455 0.86048 1.67996 1.11260 1.33176 1.18870 1.23636 0.97801 1.00651 0.97018 0.93448 0.89210 0.93049 0.89868 0.89952 0.89951 0.91185 0.92394 0.91337 0.74330 0.79944 0.87856 0.75207 1.20721 1.22417 0.79718 0.90792 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 10.85 113.37 1.23 1.23 16 2 O -0.40 -2.04 10.72 -148.98 -1.60 -3.64 16 3 C 0.05 0.01 4.32 31.21 0.13 0.15 16 4 H 0.10 -0.26 7.87 -2.39 -0.02 -0.27 16 5 C -0.13 0.21 7.46 31.12 0.23 0.44 16 6 C -0.09 0.33 3.65 -10.27 -0.04 0.29 16 7 H 0.11 -0.59 8.13 -2.39 -0.02 -0.61 16 8 C -0.11 0.38 5.17 30.59 0.16 0.54 16 9 C 0.14 -0.02 5.64 86.38 0.49 0.47 16 10 N -0.69 -2.25 5.70 -351.04 -2.00 -4.25 16 11 C 0.55 4.40 8.43 261.49 2.20 6.60 16 12 N -0.58 -4.40 9.59 -197.98 -1.90 -6.30 16 13 C 0.19 0.72 9.92 84.71 0.84 1.56 16 14 C -0.25 -0.64 5.40 -19.69 -0.11 -0.74 16 15 C -0.06 0.15 2.82 71.24 0.20 0.35 16 16 O -0.56 -0.16 12.82 -148.98 -1.91 -2.07 16 17 Si 0.76 -2.83 29.92 68.60 2.05 -0.78 16 18 C 0.21 0.96 10.99 84.71 0.93 1.89 16 19 N -0.59 -4.93 10.46 -197.99 -2.07 -7.00 16 20 C -0.15 0.11 7.48 31.21 0.23 0.34 16 21 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 22 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 23 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.08 0.03 8.10 -2.39 -0.02 0.01 16 25 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.07 -0.17 7.85 -2.39 -0.02 -0.19 16 28 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.07 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.42 0.33 8.59 -92.71 -0.80 -0.47 16 31 H 0.18 -0.24 5.04 -2.91 -0.01 -0.26 16 32 H 0.10 -0.77 7.96 -2.39 -0.02 -0.79 16 33 H 0.40 -3.12 8.74 -74.06 -0.65 -3.76 16 34 H -0.28 -0.05 7.11 99.48 0.71 0.65 16 35 H -0.30 -1.07 7.06 99.48 0.70 -0.37 16 36 H 0.19 -0.05 8.06 -2.91 -0.02 -0.08 16 37 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 38 H 0.08 0.14 7.90 -2.39 -0.02 0.13 16 Total: 0.00 -16.77 318.87 -1.26 -18.03 By element: Atomic # 1 Polarization: -6.77 SS G_CDS: -0.34 Total: -7.11 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.51 Total: 13.12 kcal Atomic # 7 Polarization: -11.58 SS G_CDS: -5.97 Total: -17.55 kcal Atomic # 8 Polarization: -2.20 SS G_CDS: -3.51 Total: -5.71 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.05 Total: -0.78 kcal Total: -16.77 -1.26 -18.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16488026_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.257 kcal (2) G-P(sol) polarization free energy of solvation -16.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds