Wall clock time and date at job start Mon Mar 8 2021 08:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 3 2 7 7 H 1.09003 * 113.61186 * 89.11185 * 6 5 3 8 8 C 1.52998 * 113.68908 * 220.00507 * 6 5 3 9 9 C 1.53000 * 109.47090 * 272.53682 * 8 6 5 10 10 N 1.46503 * 109.46856 * 180.02562 * 9 8 6 11 11 C 1.38613 * 119.99899 * 179.97438 * 10 9 8 12 12 N 1.29685 * 124.94945 * 180.02562 * 11 10 9 13 13 C 1.32118 * 116.86538 * 179.97438 * 12 11 10 14 14 C 1.50698 * 122.70921 * 180.02562 * 13 12 11 15 15 O 1.42904 * 109.47150 * 149.97700 * 14 13 12 16 16 Si 1.86298 * 109.47141 * 29.97824 * 14 13 12 17 17 C 1.33326 * 114.58140 * 0.02562 * 13 12 11 18 18 C 1.50698 * 125.95065 * 180.02562 * 17 13 12 19 19 S 1.70967 * 124.94799 * 359.69589 * 11 10 9 20 20 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 21 21 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 23 23 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 24 24 H 1.09003 * 113.60734 * 254.54335 * 5 3 2 25 25 H 1.08996 * 113.61146 * 25.43833 * 5 3 2 26 26 H 1.09002 * 109.47010 * 32.54063 * 8 6 5 27 27 H 1.09006 * 109.47124 * 152.53503 * 8 6 5 28 28 H 1.09005 * 109.46889 * 299.99674 * 9 8 6 29 29 H 1.08995 * 109.47410 * 60.00406 * 9 8 6 30 30 H 0.97003 * 119.99970 * 0.02562 * 10 9 8 31 31 H 1.09000 * 109.47625 * 269.97705 * 14 13 12 32 32 H 0.96702 * 113.99682 * 300.00400 * 15 14 13 33 33 H 1.48502 * 110.00227 * 179.97438 * 16 14 13 34 34 H 1.48500 * 110.00214 * 301.31759 * 16 14 13 35 35 H 1.08992 * 109.47357 * 89.99736 * 18 17 13 36 36 H 1.09001 * 109.46846 * 209.99551 * 18 17 13 37 37 H 1.09001 * 109.47333 * 329.99108 * 18 17 13 38 38 H 1.09005 * 113.61302 * 334.47944 * 20 3 2 39 39 H 1.08993 * 113.62030 * 105.38790 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7213 1.6652 1.3153 6 6 3.8114 2.3246 0.4540 7 1 3.6155 3.3730 0.2291 8 6 5.2317 2.0827 0.9690 9 6 5.5940 3.1613 1.9918 10 7 6.9542 2.9300 2.4844 11 6 7.5053 3.7855 3.4255 12 7 8.6964 3.6717 3.9256 13 6 9.0601 4.5794 4.8141 14 6 10.4132 4.5732 5.4774 15 8 10.7944 5.9134 5.7945 16 14 11.6687 3.8278 4.3203 17 6 8.1334 5.5013 5.0764 18 6 8.2758 6.6491 6.0424 19 16 6.7167 5.1490 4.0902 20 6 3.3923 1.3643 -0.6718 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.1660 2.3713 1.9327 25 1 3.0715 0.7972 1.8738 26 1 5.2848 1.1016 1.4411 27 1 5.9324 2.1228 0.1349 28 1 5.5409 4.1423 1.5195 29 1 4.8934 3.1211 2.8258 30 1 7.4694 2.1786 2.1514 31 1 10.3667 3.9826 6.3924 32 1 10.8560 6.4971 5.0260 33 1 13.0076 3.8164 4.9625 34 1 11.2671 2.4449 3.9576 35 1 8.6826 7.5150 5.5203 36 1 7.2987 6.8998 6.4553 37 1 8.9490 6.3626 6.8504 38 1 3.9262 0.4141 -0.6564 39 1 3.3790 1.8275 -1.6583 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16488026_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:19 Heat of formation + Delta-G solvation = -8.083866 kcal Electronic energy + Delta-G solvation = -19867.895242 eV Core-core repulsion = 16711.767126 eV Total energy + Delta-G solvation = -3156.128116 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99072 -40.68543 -38.32695 -37.53667 -36.57911 -33.17934 -31.52994 -29.12174 -27.75583 -26.85097 -25.84138 -25.22631 -24.00291 -22.86608 -20.78863 -20.42588 -19.04147 -17.87235 -17.81307 -17.15478 -16.87455 -16.75386 -16.31501 -16.06704 -15.87804 -15.51346 -15.46159 -14.90220 -14.11283 -13.98540 -13.79548 -13.72327 -13.58311 -13.51039 -13.34206 -13.17182 -12.69347 -12.60889 -12.43598 -12.18799 -11.89837 -11.80163 -11.62963 -11.42194 -11.03266 -10.51071 -10.48301 -10.26304 -9.92796 -8.58614 -4.81423 0.08526 0.23187 0.84743 1.43181 1.88187 1.95136 1.99392 2.29115 2.79077 3.29137 3.40907 3.45256 3.59309 3.64702 3.71808 3.86393 4.01111 4.08692 4.23333 4.28087 4.36453 4.39571 4.40717 4.41926 4.58384 4.66356 4.69090 4.72737 4.77126 4.80205 4.81501 4.92472 4.96034 5.09100 5.16570 5.26295 5.35499 5.59560 6.22102 6.28771 6.54203 7.01744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.059 3.941 4 H 0.088 0.912 5 C -0.154 4.154 6 C -0.107 4.107 7 H 0.097 0.903 8 C -0.116 4.116 9 C 0.122 3.878 10 N -0.696 5.696 11 C 0.320 3.680 12 N -0.547 5.547 13 C 0.068 3.932 14 C -0.034 4.034 15 O -0.536 6.536 16 Si 0.716 3.284 17 C -0.240 4.240 18 C -0.065 4.065 19 S 0.098 5.902 20 C -0.130 4.130 21 H 0.086 0.914 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.412 0.588 31 H 0.120 0.880 32 H 0.379 0.621 33 H -0.262 1.262 34 H -0.252 1.252 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 2.577 -3.442 5.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.001 3.999 4 H 0.106 0.894 5 C -0.192 4.192 6 C -0.126 4.126 7 H 0.115 0.885 8 C -0.154 4.154 9 C -0.002 4.002 10 N -0.337 5.337 11 C -0.052 4.052 12 N -0.274 5.274 13 C -0.063 4.063 14 C -0.147 4.147 15 O -0.341 6.341 16 Si 0.617 3.383 17 C -0.363 4.363 18 C -0.124 4.124 19 S 0.347 5.653 20 C -0.168 4.168 21 H 0.104 0.896 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.250 0.750 31 H 0.137 0.863 32 H 0.226 0.774 33 H -0.188 1.188 34 H -0.177 1.177 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.734 1.571 -3.361 5.264 hybrid contribution 0.074 -0.279 0.638 0.700 sum -3.661 1.292 -2.724 4.742 Atomic orbital electron populations 1.22809 0.80957 1.02991 1.00003 1.87953 1.19841 1.27275 1.94581 1.23711 0.93986 0.85442 0.96777 0.89450 1.23641 0.97348 1.00975 0.97191 1.22231 0.93432 0.99675 0.97229 0.88453 1.21681 0.96729 0.98669 0.98285 1.21583 0.81264 0.99756 0.97614 1.43976 1.16089 1.30430 1.43161 1.23271 0.92161 0.94863 0.94890 1.65971 1.14528 1.30126 1.16748 1.20126 0.98200 0.91758 0.96196 1.24514 0.95714 0.89139 1.05330 1.86504 1.90411 1.19971 1.37168 0.94078 0.75731 0.83766 0.84744 1.25112 0.95568 1.06730 1.08855 1.20206 1.02121 0.93331 0.96777 1.83970 1.19106 1.23339 1.38922 1.23267 0.95296 1.00209 0.98028 0.89551 0.93957 0.93923 0.91090 0.88984 0.90502 0.90399 0.91303 0.91336 0.74961 0.86293 0.77360 1.18782 1.17653 0.91066 0.92317 0.89050 0.88866 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.58 10.72 -35.23 -0.38 -0.96 16 3 C 0.06 -0.05 4.30 -25.92 -0.11 -0.16 16 4 H 0.09 -0.17 7.88 -51.93 -0.41 -0.58 16 5 C -0.15 0.26 7.47 -25.92 -0.19 0.07 16 6 C -0.11 0.31 3.65 -89.81 -0.33 -0.02 16 7 H 0.10 -0.36 8.13 -51.93 -0.42 -0.78 16 8 C -0.12 0.36 5.17 -26.73 -0.14 0.22 16 9 C 0.12 -0.27 5.52 -4.04 -0.02 -0.30 16 10 N -0.70 0.13 5.71 -62.29 -0.36 -0.22 16 11 C 0.32 0.68 8.24 -87.68 -0.72 -0.04 16 12 N -0.55 -2.00 8.95 -11.36 -0.10 -2.10 16 13 C 0.07 0.18 5.92 -84.19 -0.50 -0.32 16 14 C -0.03 -0.05 2.82 36.00 0.10 0.05 16 15 O -0.54 -0.16 9.90 -35.23 -0.35 -0.51 16 16 Si 0.72 0.96 32.08 -169.99 -5.45 -4.50 16 17 C -0.24 -0.44 6.50 -36.02 -0.23 -0.67 16 18 C -0.07 -0.01 8.95 36.00 0.32 0.31 16 19 S 0.10 0.10 22.32 -107.50 -2.40 -2.29 16 20 C -0.13 0.22 7.47 -25.92 -0.19 0.03 16 21 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 22 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 23 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 24 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 25 H 0.09 -0.07 7.90 -51.93 -0.41 -0.48 16 26 H 0.08 -0.20 7.85 -51.93 -0.41 -0.61 16 27 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 28 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 29 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 30 H 0.41 -0.31 8.60 -40.82 -0.35 -0.66 16 31 H 0.12 0.23 7.96 -51.93 -0.41 -0.19 16 32 H 0.38 -1.18 8.68 45.56 0.40 -0.78 16 33 H -0.26 -0.97 7.11 56.52 0.40 -0.57 16 34 H -0.25 -1.22 7.11 56.52 0.40 -0.82 16 35 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 36 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.09 0.07 6.61 -51.93 -0.34 -0.27 16 38 H 0.09 -0.09 8.10 -51.93 -0.42 -0.51 16 39 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 333.88 15.07 5.03 5.03 Total: 0.00 -5.89 333.88 -11.13 -17.02 By element: Atomic # 1 Polarization: -5.51 SS G_CDS: -6.21 Total: -11.72 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.92 Total: 0.25 kcal Atomic # 7 Polarization: -1.86 SS G_CDS: -0.46 Total: -2.32 kcal Atomic # 8 Polarization: -0.74 SS G_CDS: -0.73 Total: -1.47 kcal Atomic # 14 Polarization: 0.96 SS G_CDS: -5.45 Total: -4.50 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.40 Total: -2.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -5.89 -11.13 -17.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16488026_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.940 kcal (2) G-P(sol) polarization free energy of solvation -5.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds