Wall clock time and date at job start Mon Mar 8 2021 08:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 3 2 7 7 H 1.09003 * 113.61186 * 89.11185 * 6 5 3 8 8 C 1.52998 * 113.68908 * 220.00507 * 6 5 3 9 9 C 1.53000 * 109.47090 * 272.53682 * 8 6 5 10 10 N 1.46503 * 109.46856 * 180.02562 * 9 8 6 11 11 C 1.38613 * 119.99899 * 179.97438 * 10 9 8 12 12 N 1.29685 * 124.94945 * 180.02562 * 11 10 9 13 13 C 1.32118 * 116.86538 * 179.97438 * 12 11 10 14 14 C 1.50698 * 122.70921 * 180.02562 * 13 12 11 15 15 O 1.42904 * 109.47150 * 149.97700 * 14 13 12 16 16 Si 1.86298 * 109.47141 * 29.97824 * 14 13 12 17 17 C 1.33326 * 114.58140 * 0.02562 * 13 12 11 18 18 C 1.50698 * 125.95065 * 180.02562 * 17 13 12 19 19 S 1.70967 * 124.94799 * 359.69589 * 11 10 9 20 20 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 21 21 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 23 23 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 24 24 H 1.09003 * 113.60734 * 254.54335 * 5 3 2 25 25 H 1.08996 * 113.61146 * 25.43833 * 5 3 2 26 26 H 1.09002 * 109.47010 * 32.54063 * 8 6 5 27 27 H 1.09006 * 109.47124 * 152.53503 * 8 6 5 28 28 H 1.09005 * 109.46889 * 299.99674 * 9 8 6 29 29 H 1.08995 * 109.47410 * 60.00406 * 9 8 6 30 30 H 0.97003 * 119.99970 * 0.02562 * 10 9 8 31 31 H 1.09000 * 109.47625 * 269.97705 * 14 13 12 32 32 H 0.96702 * 113.99682 * 300.00400 * 15 14 13 33 33 H 1.48502 * 110.00227 * 179.97438 * 16 14 13 34 34 H 1.48500 * 110.00214 * 301.31759 * 16 14 13 35 35 H 1.08992 * 109.47357 * 89.99736 * 18 17 13 36 36 H 1.09001 * 109.46846 * 209.99551 * 18 17 13 37 37 H 1.09001 * 109.47333 * 329.99108 * 18 17 13 38 38 H 1.09005 * 113.61302 * 334.47944 * 20 3 2 39 39 H 1.08993 * 113.62030 * 105.38790 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7213 1.6652 1.3153 6 6 3.8114 2.3246 0.4540 7 1 3.6155 3.3730 0.2291 8 6 5.2317 2.0827 0.9690 9 6 5.5940 3.1613 1.9918 10 7 6.9542 2.9300 2.4844 11 6 7.5053 3.7855 3.4255 12 7 8.6964 3.6717 3.9256 13 6 9.0601 4.5794 4.8141 14 6 10.4132 4.5732 5.4774 15 8 10.7944 5.9134 5.7945 16 14 11.6687 3.8278 4.3203 17 6 8.1334 5.5013 5.0764 18 6 8.2758 6.6491 6.0424 19 16 6.7167 5.1490 4.0902 20 6 3.3923 1.3643 -0.6718 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.1660 2.3713 1.9327 25 1 3.0715 0.7972 1.8738 26 1 5.2848 1.1016 1.4411 27 1 5.9324 2.1228 0.1349 28 1 5.5409 4.1423 1.5195 29 1 4.8934 3.1211 2.8258 30 1 7.4694 2.1786 2.1514 31 1 10.3667 3.9826 6.3924 32 1 10.8560 6.4971 5.0260 33 1 13.0076 3.8164 4.9625 34 1 11.2671 2.4449 3.9576 35 1 8.6826 7.5150 5.5203 36 1 7.2987 6.8998 6.4553 37 1 8.9490 6.3626 6.8504 38 1 3.9262 0.4141 -0.6564 39 1 3.3790 1.8275 -1.6583 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16488026_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:18 Heat of formation + Delta-G solvation = -4.219207 kcal Electronic energy + Delta-G solvation = -19867.727658 eV Core-core repulsion = 16711.767126 eV Total energy + Delta-G solvation = -3155.960532 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07253 -40.57449 -38.31191 -37.52298 -36.55389 -33.17685 -31.46729 -29.16852 -27.68057 -26.71161 -25.83540 -25.21664 -24.03346 -22.73653 -20.70688 -20.40557 -19.10109 -17.91886 -17.75807 -17.15984 -16.81925 -16.67956 -16.28573 -16.02287 -15.84731 -15.60920 -15.39883 -14.89143 -14.31655 -13.91734 -13.79412 -13.66415 -13.48141 -13.39591 -13.34583 -13.07396 -12.73673 -12.50640 -12.34615 -12.27484 -12.01763 -11.75008 -11.48331 -11.27764 -11.01100 -10.62247 -10.41511 -10.34907 -10.01503 -8.63241 -4.96637 -0.00997 0.16009 0.75597 1.30294 1.72706 1.83996 1.94950 2.11857 2.89298 3.39346 3.45678 3.55377 3.61773 3.79619 3.88121 4.01666 4.16224 4.20665 4.27557 4.33214 4.44179 4.49230 4.52143 4.53228 4.59943 4.80706 4.82944 4.84134 4.85788 4.89962 4.93845 4.98960 5.09104 5.13984 5.24689 5.36388 5.45016 5.62305 6.28991 6.30884 6.68037 6.95108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.049 3.951 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.094 4.094 7 H 0.112 0.888 8 C -0.108 4.108 9 C 0.123 3.877 10 N -0.692 5.692 11 C 0.307 3.693 12 N -0.577 5.577 13 C 0.053 3.947 14 C -0.030 4.030 15 O -0.539 6.539 16 Si 0.791 3.209 17 C -0.248 4.248 18 C -0.062 4.062 19 S 0.122 5.878 20 C -0.132 4.132 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.413 0.587 31 H 0.113 0.887 32 H 0.395 0.605 33 H -0.293 1.293 34 H -0.303 1.303 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 3.919 -3.759 6.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.009 4.009 4 H 0.117 0.883 5 C -0.192 4.192 6 C -0.113 4.113 7 H 0.130 0.870 8 C -0.146 4.146 9 C 0.000 4.000 10 N -0.333 5.333 11 C -0.065 4.065 12 N -0.305 5.305 13 C -0.077 4.077 14 C -0.144 4.144 15 O -0.346 6.346 16 Si 0.698 3.302 17 C -0.371 4.371 18 C -0.121 4.121 19 S 0.371 5.629 20 C -0.170 4.170 21 H 0.107 0.893 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.251 0.749 31 H 0.130 0.870 32 H 0.245 0.755 33 H -0.221 1.221 34 H -0.230 1.230 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.356 2.941 -3.696 6.425 hybrid contribution 0.219 -0.748 0.718 1.059 sum -4.137 2.193 -2.978 5.549 Atomic orbital electron populations 1.22916 0.80101 1.03460 1.00697 1.87914 1.21019 1.28790 1.94787 1.23946 0.94469 0.84958 0.97523 0.88297 1.23609 0.97808 1.00754 0.96998 1.22192 0.92973 1.00089 0.96069 0.86964 1.21607 0.96775 0.98075 0.98167 1.21679 0.80186 1.00423 0.97752 1.44158 1.16664 1.29987 1.42467 1.23538 0.92175 0.95563 0.95177 1.65971 1.15632 1.31115 1.17790 1.20245 0.98810 0.92075 0.96553 1.24424 0.95416 0.89814 1.04707 1.86476 1.90222 1.19547 1.38338 0.93209 0.73187 0.80715 0.83111 1.25389 0.95725 1.06911 1.09053 1.20230 1.02305 0.93237 0.96356 1.83800 1.18331 1.22432 1.38356 1.23267 0.94840 1.00090 0.98785 0.89308 0.93362 0.93090 0.90421 0.90292 0.91116 0.89832 0.90380 0.91355 0.74851 0.87021 0.75518 1.22108 1.23045 0.89509 0.91909 0.89714 0.90008 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.41 -1.51 10.72 -148.98 -1.60 -3.10 16 3 C 0.05 -0.08 4.30 31.12 0.13 0.06 16 4 H 0.10 -0.43 7.88 -2.39 -0.02 -0.45 16 5 C -0.15 0.53 7.47 31.12 0.23 0.76 16 6 C -0.09 0.61 3.65 -10.27 -0.04 0.57 16 7 H 0.11 -1.02 8.13 -2.39 -0.02 -1.03 16 8 C -0.11 0.71 5.17 30.59 0.16 0.87 16 9 C 0.12 -0.63 5.52 86.38 0.48 -0.15 16 10 N -0.69 0.23 5.71 -351.00 -2.01 -1.77 16 11 C 0.31 1.34 8.24 179.32 1.48 2.81 16 12 N -0.58 -4.59 8.95 -189.86 -1.70 -6.29 16 13 C 0.05 0.30 5.92 41.40 0.25 0.54 16 14 C -0.03 -0.10 2.82 71.24 0.20 0.10 16 15 O -0.54 -0.07 9.90 -148.98 -1.47 -1.54 16 16 Si 0.79 2.95 32.08 68.60 2.20 5.15 16 17 C -0.25 -0.81 6.50 24.57 0.16 -0.65 16 18 C -0.06 0.04 8.95 71.24 0.64 0.68 16 19 S 0.12 0.19 22.32 -56.49 -1.26 -1.07 16 20 C -0.13 0.46 7.47 31.12 0.23 0.69 16 21 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 22 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 23 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.08 -0.06 7.90 -2.39 -0.02 -0.07 16 26 H 0.07 -0.35 7.85 -2.39 -0.02 -0.37 16 27 H 0.08 -0.60 8.14 -2.38 -0.02 -0.62 16 28 H 0.08 -0.51 8.14 -2.38 -0.02 -0.53 16 29 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.41 -0.44 8.60 -92.71 -0.80 -1.23 16 31 H 0.11 0.52 7.96 -2.39 -0.02 0.50 16 32 H 0.39 -2.85 8.68 -74.06 -0.64 -3.49 16 33 H -0.29 -2.53 7.11 99.48 0.71 -1.82 16 34 H -0.30 -3.68 7.11 99.48 0.71 -2.97 16 35 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.08 0.09 6.61 -2.39 -0.02 0.07 16 38 H 0.08 -0.09 8.10 -2.38 -0.02 -0.11 16 39 H 0.08 -0.41 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -14.45 333.88 -1.04 -15.48 By element: Atomic # 1 Polarization: -13.98 SS G_CDS: -0.35 Total: -14.33 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.15 Total: 7.48 kcal Atomic # 7 Polarization: -4.36 SS G_CDS: -3.70 Total: -8.06 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: -3.07 Total: -4.65 kcal Atomic # 14 Polarization: 2.95 SS G_CDS: 2.20 Total: 5.15 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.26 Total: -1.07 kcal Total: -14.45 -1.04 -15.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16488026_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.263 kcal (2) G-P(sol) polarization free energy of solvation -14.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds