Wall clock time and date at job start Mon Mar 8 2021 08:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99945 * 2 1 4 4 H 1.09002 * 112.85240 * 20.32953 * 3 2 1 5 5 C 1.53781 * 113.61632 * 151.52718 * 3 2 1 6 6 C 1.53777 * 87.08336 * 140.05947 * 5 3 2 7 7 H 1.09008 * 113.61204 * 89.11878 * 6 5 3 8 8 C 1.53002 * 113.61665 * 220.01809 * 6 5 3 9 9 C 1.53000 * 109.47054 * 185.00286 * 8 6 5 10 10 N 1.46496 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.39139 * 120.00223 * 180.02562 * 10 9 8 12 12 N 1.32337 * 119.71574 * 359.72661 * 11 10 9 13 13 C 1.32012 * 121.64336 * 179.71190 * 12 11 10 14 14 C 1.37980 * 120.90177 * 0.56746 * 13 12 11 15 15 C 1.50705 * 120.32552 * 179.74892 * 14 13 12 16 16 O 1.42894 * 109.47256 * 119.97167 * 15 14 13 17 17 Si 1.86300 * 109.47033 * 359.96986 * 15 14 13 18 18 C 1.38902 * 119.34936 * 359.71975 * 14 13 12 19 19 C 1.38447 * 118.48411 * 0.02562 * 18 14 13 20 20 F 1.35091 * 120.47157 * 180.02562 * 19 18 14 21 21 C 1.53775 * 87.07992 * 334.56762 * 6 5 3 22 22 H 1.09004 * 109.47039 * 60.00584 * 1 2 3 23 23 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47415 * 300.00867 * 1 2 3 25 25 H 1.08997 * 113.61673 * 254.61496 * 5 3 2 26 26 H 1.09009 * 113.61202 * 25.42726 * 5 3 2 27 27 H 1.09003 * 109.47196 * 305.00417 * 8 6 5 28 28 H 1.09000 * 109.46667 * 65.00012 * 8 6 5 29 29 H 1.09000 * 109.46734 * 300.00191 * 9 8 6 30 30 H 1.08998 * 109.47096 * 60.00261 * 9 8 6 31 31 H 0.97005 * 120.00190 * 359.97438 * 10 9 8 32 32 H 1.08003 * 119.54586 * 180.28813 * 13 12 11 33 33 H 1.09000 * 109.46956 * 239.97144 * 15 14 13 34 34 H 0.96703 * 114.00592 * 299.99850 * 16 15 14 35 35 H 1.48502 * 109.99876 * 180.02562 * 17 15 14 36 36 H 1.48496 * 110.00316 * 301.32114 * 17 15 14 37 37 H 1.07999 * 120.75793 * 180.02562 * 18 14 13 38 38 H 1.08993 * 113.61636 * 270.87622 * 21 6 5 39 39 H 1.09008 * 113.61006 * 139.97865 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3219 2.0753 0.3490 5 6 3.3923 1.3645 0.6717 6 6 3.8114 2.3246 -0.4540 7 1 3.6155 3.3731 -0.2292 8 6 5.2310 2.0813 -0.9702 9 6 5.5935 3.1600 -1.9930 10 7 6.9526 2.9267 -2.4877 11 6 7.5059 3.7851 -3.4327 12 7 6.7974 4.8073 -3.8849 13 6 7.2866 5.6483 -4.7771 14 6 8.5599 5.4837 -5.2826 15 6 9.1033 6.4484 -6.3050 16 8 10.2792 7.0760 -5.7899 17 14 7.8197 7.7459 -6.6784 18 6 9.3361 4.4204 -4.8396 19 6 8.7989 3.5574 -3.8996 20 9 9.5187 2.5105 -3.4405 21 6 2.7213 1.6651 -1.3152 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.3789 1.8277 1.6583 26 1 3.9255 0.4138 0.6578 27 1 5.9324 2.1205 -0.1368 28 1 5.2826 1.1004 -1.4428 29 1 4.8921 3.1208 -2.8264 30 1 5.5419 4.1408 -1.5204 31 1 7.4671 2.1743 -2.1559 32 1 6.6803 6.4740 -5.1193 33 1 9.3504 5.9082 -7.2189 34 1 10.1335 7.5759 -4.9751 35 1 8.3432 8.7031 -7.6858 36 1 6.5804 7.1034 -7.1848 37 1 10.3357 4.2702 -5.2196 38 1 3.0717 0.7972 -1.8737 39 1 2.1661 2.3713 -1.9328 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16488026_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:22 Heat of formation + Delta-G solvation = -56.828974 kcal Electronic energy + Delta-G solvation = -21607.598736 eV Core-core repulsion = 18046.288270 eV Total energy + Delta-G solvation = -3561.310466 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.84515 -41.38057 -40.61343 -38.33957 -37.58414 -36.55334 -33.38607 -32.67418 -30.59906 -27.80593 -26.84209 -26.57197 -25.66712 -24.16865 -22.85521 -22.52982 -20.65557 -19.32453 -18.50532 -18.26453 -17.60677 -17.52414 -17.02999 -16.71465 -16.34258 -16.15221 -16.01503 -15.84753 -15.68796 -15.36103 -15.25914 -14.45500 -14.33156 -14.03614 -13.71658 -13.53896 -13.44218 -13.37656 -13.07594 -12.60994 -12.56262 -12.34405 -12.07407 -11.82264 -11.52933 -11.43103 -11.19304 -10.67819 -10.64925 -10.45115 -10.42791 -8.73836 -5.09123 -0.04775 0.14827 1.22804 1.57549 1.93057 1.97900 2.58484 2.83493 3.07018 3.25845 3.40867 3.43906 3.54822 3.59493 3.75014 3.80283 3.85585 3.99910 4.02495 4.19467 4.24675 4.37869 4.41902 4.44768 4.51158 4.52692 4.59765 4.71638 4.75050 4.77584 4.78854 4.90299 4.95205 4.98891 5.04424 5.17880 5.35018 5.39065 5.95539 6.17973 6.26944 6.52599 6.97561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.059 3.941 4 H 0.087 0.913 5 C -0.131 4.131 6 C -0.104 4.104 7 H 0.097 0.903 8 C -0.121 4.121 9 C 0.133 3.867 10 N -0.719 5.719 11 C 0.390 3.610 12 N -0.512 5.512 13 C 0.147 3.853 14 C -0.211 4.211 15 C -0.055 4.055 16 O -0.541 6.541 17 Si 0.686 3.314 18 C -0.038 4.038 19 C -0.021 4.021 20 F -0.134 7.134 21 C -0.153 4.153 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.163 0.837 33 H 0.115 0.885 34 H 0.380 0.620 35 H -0.252 1.252 36 H -0.254 1.254 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 2.238 2.362 4.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.001 3.999 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.123 4.123 7 H 0.115 0.885 8 C -0.159 4.159 9 C 0.010 3.990 10 N -0.352 5.352 11 C 0.152 3.848 12 N -0.230 5.230 13 C -0.010 4.010 14 C -0.217 4.217 15 C -0.166 4.166 16 O -0.346 6.346 17 Si 0.588 3.412 18 C -0.064 4.064 19 C -0.048 4.048 20 F -0.113 7.113 21 C -0.190 4.190 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.249 0.751 32 H 0.179 0.821 33 H 0.133 0.867 34 H 0.227 0.773 35 H -0.176 1.176 36 H -0.179 1.179 37 H 0.167 0.833 38 H 0.109 0.891 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.695 2.267 1.634 4.633 hybrid contribution 1.190 -1.025 -0.251 1.591 sum -2.505 1.242 1.383 3.120 Atomic orbital electron populations 1.22803 0.81018 1.02937 0.99990 1.87951 1.19792 1.27357 1.94594 1.23723 0.93970 0.85355 0.96894 0.89487 1.23273 0.95294 1.00243 0.98072 1.22207 0.93607 0.99553 0.96972 0.88486 1.21756 0.96573 0.99014 0.98553 1.21341 0.81910 0.98821 0.96967 1.44609 1.17077 1.30106 1.43370 1.18436 0.87329 0.89696 0.89384 1.67308 1.35524 1.04681 1.15440 1.22338 0.92245 0.95703 0.90680 1.20926 0.96342 1.00152 1.04261 1.24857 0.95707 0.99195 0.96861 1.86507 1.32329 1.69883 1.45872 0.94830 0.77116 0.81256 0.88018 1.21270 1.00580 0.91497 0.93031 1.18010 0.91350 0.91598 1.03816 1.91488 1.77151 1.54759 1.87865 1.23621 0.97384 1.00916 0.97111 0.93980 0.89592 0.93941 0.90779 0.88963 0.90881 0.90941 0.91380 0.91353 0.75070 0.82083 0.86730 0.77290 1.17621 1.17888 0.83298 0.89097 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.77 10.72 -35.23 -0.38 -1.15 16 3 C 0.06 -0.01 4.30 -25.92 -0.11 -0.12 16 4 H 0.09 -0.11 7.88 -51.93 -0.41 -0.52 16 5 C -0.13 0.12 7.47 -25.92 -0.19 -0.07 16 6 C -0.10 0.20 3.65 -89.81 -0.33 -0.13 16 7 H 0.10 -0.24 8.13 -51.92 -0.42 -0.66 16 8 C -0.12 0.25 5.17 -26.73 -0.14 0.11 16 9 C 0.13 -0.11 5.69 -4.04 -0.02 -0.13 16 10 N -0.72 -0.20 5.71 -60.34 -0.34 -0.55 16 11 C 0.39 0.75 7.49 -154.86 -1.16 -0.41 16 12 N -0.51 -0.98 9.57 -12.36 -0.12 -1.10 16 13 C 0.15 0.02 9.84 -17.57 -0.17 -0.15 16 14 C -0.21 0.02 5.40 -104.47 -0.56 -0.55 16 15 C -0.05 0.05 2.84 36.01 0.10 0.15 16 16 O -0.54 0.24 12.78 -35.23 -0.45 -0.21 16 17 Si 0.69 -1.30 29.82 -169.99 -5.07 -6.37 16 18 C -0.04 -0.03 9.75 -39.26 -0.38 -0.42 16 19 C -0.02 -0.04 7.35 -39.09 -0.29 -0.33 16 20 F -0.13 -0.34 16.65 2.25 0.04 -0.30 16 21 C -0.15 0.13 7.46 -25.92 -0.19 -0.07 16 22 H 0.04 -0.04 8.14 -51.93 -0.42 -0.47 16 23 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 24 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 25 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.09 -0.02 8.10 -51.92 -0.42 -0.44 16 27 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 28 H 0.07 -0.12 7.84 -51.93 -0.41 -0.53 16 29 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.41 -0.32 7.94 -40.82 -0.32 -0.65 16 32 H 0.16 -0.35 4.88 -52.48 -0.26 -0.61 16 33 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 34 H 0.38 -1.61 8.70 45.56 0.40 -1.22 16 35 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 36 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 37 H 0.15 0.01 8.06 -52.49 -0.42 -0.41 16 38 H 0.09 0.01 7.90 -51.93 -0.41 -0.40 16 39 H 0.07 -0.08 8.14 -51.92 -0.42 -0.51 16 LS Contribution 329.23 15.07 4.96 4.96 Total: 0.00 -5.88 329.23 -9.38 -15.27 By element: Atomic # 1 Polarization: -3.85 SS G_CDS: -5.67 Total: -9.52 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.36 Total: -1.03 kcal Atomic # 7 Polarization: -1.19 SS G_CDS: -0.46 Total: -1.65 kcal Atomic # 8 Polarization: -0.53 SS G_CDS: -0.83 Total: -1.36 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.30 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.07 Total: -6.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -5.88 -9.38 -15.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16488026_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.561 kcal (2) G-P(sol) polarization free energy of solvation -5.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds