Wall clock time and date at job start Mon Mar 8 2021 08:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99945 * 2 1 4 4 H 1.09002 * 112.85240 * 20.32953 * 3 2 1 5 5 C 1.53781 * 113.61632 * 151.52718 * 3 2 1 6 6 C 1.53777 * 87.08336 * 140.05947 * 5 3 2 7 7 H 1.09008 * 113.61204 * 89.11878 * 6 5 3 8 8 C 1.53002 * 113.61665 * 220.01809 * 6 5 3 9 9 C 1.53000 * 109.47054 * 185.00286 * 8 6 5 10 10 N 1.46496 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.39139 * 120.00223 * 180.02562 * 10 9 8 12 12 N 1.32337 * 119.71574 * 359.72661 * 11 10 9 13 13 C 1.32012 * 121.64336 * 179.71190 * 12 11 10 14 14 C 1.37980 * 120.90177 * 0.56746 * 13 12 11 15 15 C 1.50705 * 120.32552 * 179.74892 * 14 13 12 16 16 O 1.42894 * 109.47256 * 119.97167 * 15 14 13 17 17 Si 1.86300 * 109.47033 * 359.96986 * 15 14 13 18 18 C 1.38902 * 119.34936 * 359.71975 * 14 13 12 19 19 C 1.38447 * 118.48411 * 0.02562 * 18 14 13 20 20 F 1.35091 * 120.47157 * 180.02562 * 19 18 14 21 21 C 1.53775 * 87.07992 * 334.56762 * 6 5 3 22 22 H 1.09004 * 109.47039 * 60.00584 * 1 2 3 23 23 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47415 * 300.00867 * 1 2 3 25 25 H 1.08997 * 113.61673 * 254.61496 * 5 3 2 26 26 H 1.09009 * 113.61202 * 25.42726 * 5 3 2 27 27 H 1.09003 * 109.47196 * 305.00417 * 8 6 5 28 28 H 1.09000 * 109.46667 * 65.00012 * 8 6 5 29 29 H 1.09000 * 109.46734 * 300.00191 * 9 8 6 30 30 H 1.08998 * 109.47096 * 60.00261 * 9 8 6 31 31 H 0.97005 * 120.00190 * 359.97438 * 10 9 8 32 32 H 1.08003 * 119.54586 * 180.28813 * 13 12 11 33 33 H 1.09000 * 109.46956 * 239.97144 * 15 14 13 34 34 H 0.96703 * 114.00592 * 299.99850 * 16 15 14 35 35 H 1.48502 * 109.99876 * 180.02562 * 17 15 14 36 36 H 1.48496 * 110.00316 * 301.32114 * 17 15 14 37 37 H 1.07999 * 120.75793 * 180.02562 * 18 14 13 38 38 H 1.08993 * 113.61636 * 270.87622 * 21 6 5 39 39 H 1.09008 * 113.61006 * 139.97865 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3219 2.0753 0.3490 5 6 3.3923 1.3645 0.6717 6 6 3.8114 2.3246 -0.4540 7 1 3.6155 3.3731 -0.2292 8 6 5.2310 2.0813 -0.9702 9 6 5.5935 3.1600 -1.9930 10 7 6.9526 2.9267 -2.4877 11 6 7.5059 3.7851 -3.4327 12 7 6.7974 4.8073 -3.8849 13 6 7.2866 5.6483 -4.7771 14 6 8.5599 5.4837 -5.2826 15 6 9.1033 6.4484 -6.3050 16 8 10.2792 7.0760 -5.7899 17 14 7.8197 7.7459 -6.6784 18 6 9.3361 4.4204 -4.8396 19 6 8.7989 3.5574 -3.8996 20 9 9.5187 2.5105 -3.4405 21 6 2.7213 1.6651 -1.3152 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.3789 1.8277 1.6583 26 1 3.9255 0.4138 0.6578 27 1 5.9324 2.1205 -0.1368 28 1 5.2826 1.1004 -1.4428 29 1 4.8921 3.1208 -2.8264 30 1 5.5419 4.1408 -1.5204 31 1 7.4671 2.1743 -2.1559 32 1 6.6803 6.4740 -5.1193 33 1 9.3504 5.9082 -7.2189 34 1 10.1335 7.5759 -4.9751 35 1 8.3432 8.7031 -7.6858 36 1 6.5804 7.1034 -7.1848 37 1 10.3357 4.2702 -5.2196 38 1 3.0717 0.7972 -1.8737 39 1 2.1661 2.3713 -1.9328 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16488026_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:21 Heat of formation + Delta-G solvation = -53.684036 kcal Electronic energy + Delta-G solvation = -21607.462362 eV Core-core repulsion = 18046.288270 eV Total energy + Delta-G solvation = -3561.174091 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.97392 -41.41442 -40.55422 -38.31269 -37.56091 -36.54025 -33.40505 -32.67941 -30.57855 -27.76324 -26.78386 -26.53376 -25.66250 -24.17427 -22.88030 -22.46765 -20.57076 -19.34936 -18.51032 -18.31772 -17.58752 -17.52434 -17.10517 -16.65720 -16.30472 -16.13813 -15.98295 -15.83946 -15.69110 -15.39485 -15.23118 -14.47649 -14.34764 -14.08736 -13.66636 -13.48142 -13.38899 -13.36506 -13.00904 -12.56369 -12.48842 -12.26882 -12.12314 -11.74358 -11.45497 -11.38548 -11.13529 -10.74323 -10.68730 -10.41630 -10.40512 -8.76945 -4.96533 -0.09776 0.09659 1.32580 1.66689 1.98343 2.00488 2.53577 2.88800 3.01877 3.26789 3.48127 3.52158 3.63776 3.66490 3.82574 3.85231 3.89605 4.00273 4.09761 4.27549 4.33046 4.43796 4.47113 4.51319 4.52650 4.63313 4.67726 4.71696 4.82358 4.83405 4.86908 4.97112 4.98127 5.02865 5.12573 5.26082 5.37829 5.46433 5.95381 6.16867 6.30994 6.79549 6.94587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.050 3.950 4 H 0.099 0.901 5 C -0.132 4.132 6 C -0.094 4.094 7 H 0.108 0.892 8 C -0.113 4.113 9 C 0.139 3.861 10 N -0.718 5.718 11 C 0.380 3.620 12 N -0.527 5.527 13 C 0.147 3.853 14 C -0.207 4.207 15 C -0.059 4.059 16 O -0.556 6.556 17 Si 0.776 3.224 18 C -0.040 4.040 19 C -0.039 4.039 20 F -0.141 7.141 21 C -0.153 4.153 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.416 0.584 32 H 0.184 0.816 33 H 0.111 0.889 34 H 0.396 0.604 35 H -0.297 1.297 36 H -0.280 1.280 37 H 0.154 0.846 38 H 0.078 0.922 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 3.056 2.691 4.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.008 4.008 4 H 0.117 0.883 5 C -0.169 4.169 6 C -0.113 4.113 7 H 0.127 0.873 8 C -0.150 4.150 9 C 0.016 3.984 10 N -0.351 5.351 11 C 0.141 3.859 12 N -0.245 5.245 13 C -0.010 4.010 14 C -0.212 4.212 15 C -0.170 4.170 16 O -0.364 6.364 17 Si 0.682 3.318 18 C -0.067 4.067 19 C -0.066 4.066 20 F -0.120 7.120 21 C -0.191 4.191 22 H 0.066 0.934 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.253 0.747 32 H 0.200 0.800 33 H 0.128 0.872 34 H 0.246 0.754 35 H -0.225 1.225 36 H -0.206 1.206 37 H 0.172 0.828 38 H 0.097 0.903 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.958 3.069 2.001 5.393 hybrid contribution 1.282 -1.259 -0.399 1.841 sum -2.675 1.810 1.602 3.605 Atomic orbital electron populations 1.22920 0.80088 1.03488 1.00691 1.87912 1.21037 1.28726 1.94780 1.23930 0.94442 0.84956 0.97425 0.88321 1.23264 0.94849 1.00075 0.98733 1.22170 0.93192 0.99874 0.96065 0.87344 1.21673 0.96662 0.98353 0.98344 1.21306 0.81215 0.99132 0.96786 1.44696 1.17409 1.29954 1.43012 1.18597 0.87475 0.90040 0.89771 1.67358 1.35882 1.05074 1.16174 1.22711 0.92478 0.95795 0.89969 1.20997 0.96182 0.99907 1.04142 1.25005 0.96084 0.99467 0.96419 1.86473 1.32685 1.70197 1.47030 0.93781 0.74224 0.77875 0.85968 1.21426 1.00950 0.91553 0.92727 1.18155 0.91690 0.91998 1.04739 1.91461 1.77329 1.55164 1.88071 1.23588 0.97822 1.00652 0.96997 0.93419 0.89225 0.93065 0.90011 0.89952 0.90253 0.91344 0.92266 0.91407 0.74680 0.79968 0.87179 0.75393 1.22469 1.20627 0.82832 0.90327 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.41 -1.89 10.72 -148.98 -1.60 -3.48 16 3 C 0.05 -0.01 4.30 31.12 0.13 0.13 16 4 H 0.10 -0.29 7.88 -2.39 -0.02 -0.31 16 5 C -0.13 0.25 7.47 31.12 0.23 0.48 16 6 C -0.09 0.38 3.65 -10.27 -0.04 0.34 16 7 H 0.11 -0.65 8.13 -2.38 -0.02 -0.67 16 8 C -0.11 0.46 5.17 30.60 0.16 0.62 16 9 C 0.14 -0.21 5.69 86.38 0.49 0.28 16 10 N -0.72 -0.71 5.71 -344.82 -1.97 -2.68 16 11 C 0.38 1.60 7.49 133.09 1.00 2.60 16 12 N -0.53 -1.97 9.57 -193.03 -1.85 -3.82 16 13 C 0.15 -0.04 9.84 84.60 0.83 0.79 16 14 C -0.21 0.10 5.40 -19.76 -0.11 -0.01 16 15 C -0.06 0.14 2.84 71.24 0.20 0.34 16 16 O -0.56 0.83 12.78 -148.98 -1.90 -1.07 16 17 Si 0.78 -3.38 29.82 68.60 2.05 -1.34 16 18 C -0.04 -0.08 9.75 22.48 0.22 0.13 16 19 C -0.04 -0.18 7.35 22.59 0.17 -0.01 16 20 F -0.14 -0.84 16.65 44.97 0.75 -0.09 16 21 C -0.15 0.22 7.46 31.12 0.23 0.45 16 22 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 23 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.05 -0.14 8.14 -2.39 -0.02 -0.15 16 25 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.08 0.01 8.10 -2.38 -0.02 -0.01 16 27 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.07 -0.20 7.84 -2.39 -0.02 -0.22 16 29 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.42 -0.40 7.94 -92.70 -0.74 -1.14 16 32 H 0.18 -1.02 4.88 -2.91 -0.01 -1.04 16 33 H 0.11 -0.16 7.96 -2.39 -0.02 -0.18 16 34 H 0.40 -3.74 8.70 -74.06 -0.64 -4.39 16 35 H -0.30 -1.00 7.11 99.48 0.71 -0.29 16 36 H -0.28 0.01 7.11 99.48 0.71 0.71 16 37 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.08 0.09 7.90 -2.39 -0.02 0.07 16 39 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 Total: 0.00 -13.94 329.23 -0.04 -13.99 By element: Atomic # 1 Polarization: -8.59 SS G_CDS: -0.27 Total: -8.86 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 4.75 Total: 7.35 kcal Atomic # 7 Polarization: -2.68 SS G_CDS: -3.81 Total: -6.49 kcal Atomic # 8 Polarization: -1.05 SS G_CDS: -3.50 Total: -4.55 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.75 Total: -0.09 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.05 Total: -1.34 kcal Total: -13.94 -0.04 -13.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16488026_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.698 kcal (2) G-P(sol) polarization free energy of solvation -13.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds