Wall clock time and date at job start Mon Mar 8 2021 09:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 3.84202 * 3 2 1 5 5 C 1.53002 * 109.47021 * 123.83955 * 3 2 1 6 6 C 1.52996 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47114 * 299.99749 * 6 5 3 8 8 H 1.08996 * 109.47966 * 300.00526 * 7 6 5 9 9 C 1.53007 * 109.46791 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.46613 * 175.00244 * 9 7 6 11 11 C 1.38407 * 119.99658 * 180.02562 * 10 9 7 12 12 N 1.32500 * 119.21675 * 359.73180 * 11 10 9 13 13 C 1.32276 * 120.73690 * 179.71767 * 12 11 10 14 14 C 1.38609 * 119.19723 * 0.54857 * 13 12 11 15 15 C 1.50698 * 120.71849 * 179.71145 * 14 13 12 16 16 O 1.42907 * 109.46851 * 245.01981 * 15 14 13 17 17 Si 1.86298 * 109.47329 * 5.01474 * 15 14 13 18 18 C 1.38599 * 118.55761 * 359.72586 * 14 13 12 19 19 N 1.32274 * 119.19942 * 0.02562 * 18 14 13 20 20 C 1.53002 * 109.46673 * 60.00467 * 7 6 5 21 21 C 1.52996 * 109.47343 * 299.99618 * 20 7 6 22 22 H 1.08996 * 109.47407 * 300.00412 * 5 3 2 23 23 H 1.09004 * 109.46733 * 59.99729 * 5 3 2 24 24 H 1.08996 * 109.47134 * 60.00785 * 6 5 3 25 25 H 1.09001 * 109.46993 * 180.02562 * 6 5 3 26 26 H 1.08992 * 109.47354 * 295.00668 * 9 7 6 27 27 H 1.08994 * 109.46790 * 55.01015 * 9 7 6 28 28 H 0.96994 * 120.00180 * 0.02562 * 10 9 7 29 29 H 1.08000 * 120.40191 * 180.25417 * 13 12 11 30 30 H 1.08995 * 109.47669 * 125.01837 * 15 14 13 31 31 H 0.96697 * 113.99937 * 180.02562 * 16 15 14 32 32 H 1.48498 * 110.00296 * 300.00470 * 17 15 14 33 33 H 1.48507 * 109.99754 * 61.32491 * 17 15 14 34 34 H 1.08003 * 120.39709 * 180.02562 * 18 14 13 35 35 H 1.09004 * 109.47059 * 60.00016 * 20 7 6 36 36 H 1.09004 * 109.46930 * 179.97438 * 20 7 6 37 37 H 1.09000 * 109.46870 * 300.00214 * 21 20 7 38 38 H 1.09001 * 109.47372 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9718 -1.0245 -0.0689 5 6 3.1176 0.8042 -1.1982 6 6 4.6476 0.8054 -1.1978 7 6 5.1567 1.4420 0.0969 8 1 4.7926 2.4671 0.1657 9 6 6.6868 1.4426 0.0975 10 7 7.1743 2.1579 1.2795 11 6 8.5349 2.2898 1.4961 12 7 9.3827 1.7586 0.6274 13 6 10.6890 1.8714 0.8020 14 6 11.1667 2.5450 1.9153 15 6 12.6481 2.6883 2.1514 16 8 13.0124 1.9781 3.3368 17 14 13.5793 1.9885 0.6974 18 6 10.2522 3.0836 2.8067 19 7 8.9588 2.9393 2.5704 20 6 4.6471 0.6384 1.2951 21 6 3.1172 0.6372 1.2948 22 1 2.7544 0.3510 -2.1205 23 1 2.7537 1.8294 -1.1293 24 1 5.0117 -0.2196 -1.2665 25 1 5.0106 1.3782 -2.0511 26 1 7.0506 0.4154 0.1187 27 1 7.0502 1.9383 -0.8026 28 1 6.5436 2.5390 1.9102 29 1 11.3751 1.4398 0.0883 30 1 12.8971 3.7429 2.2687 31 1 13.9541 2.0272 3.5510 32 1 13.2486 0.5509 0.5267 33 1 13.2333 2.7393 -0.5363 34 1 10.5917 3.6147 3.6837 35 1 5.0114 -0.3867 1.2264 36 1 5.0102 1.0917 2.2175 37 1 2.7530 1.6622 1.3634 38 1 2.7541 0.0650 2.1486 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16496580_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:16 Heat of formation + Delta-G solvation = 43.480911 kcal Electronic energy + Delta-G solvation = -20365.426222 eV Core-core repulsion = 17209.297583 eV Total energy + Delta-G solvation = -3156.128638 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17341 -40.28942 -38.16048 -37.58167 -36.48229 -34.86034 -33.58019 -31.92934 -31.60925 -27.76129 -26.21870 -25.67952 -23.72821 -23.23113 -22.66382 -20.92987 -19.49393 -18.77317 -18.68335 -18.24840 -16.74422 -16.60197 -16.18565 -16.00412 -15.72209 -15.33201 -15.28183 -15.02378 -14.78435 -14.72669 -14.36842 -14.21878 -14.01183 -13.62524 -13.17457 -13.14606 -13.07534 -12.74900 -12.32226 -12.08509 -12.04852 -11.99642 -11.81960 -11.57759 -11.39312 -11.26114 -10.99138 -10.56814 -10.00653 -9.14624 -4.92250 -0.08542 0.03846 1.34307 1.68830 1.71533 1.74718 1.79117 1.99276 2.68012 2.88649 2.99300 3.45417 3.50577 3.64779 3.70591 3.75614 3.77983 3.91904 4.07486 4.14146 4.24061 4.34747 4.42839 4.49399 4.55252 4.56783 4.66268 4.72947 4.76270 4.89797 4.97461 5.10960 5.14106 5.18750 5.24588 5.25457 5.38793 5.53236 5.68191 5.94312 6.33896 6.54412 6.98612 7.17986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.236 3.764 3 C 0.011 3.989 4 H 0.139 0.861 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.094 4.094 8 H 0.085 0.915 9 C 0.143 3.857 10 N -0.687 5.687 11 C 0.550 3.450 12 N -0.580 5.580 13 C 0.176 3.824 14 C -0.255 4.255 15 C -0.054 4.054 16 O -0.566 6.566 17 Si 0.769 3.231 18 C 0.219 3.781 19 N -0.585 5.585 20 C -0.109 4.109 21 C -0.108 4.108 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.420 0.580 29 H 0.161 0.839 30 H 0.102 0.898 31 H 0.405 0.595 32 H -0.295 1.295 33 H -0.288 1.288 34 H 0.194 0.806 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 1.420 0.023 8.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.081 4.081 3 C -0.011 4.011 4 H 0.156 0.844 5 C -0.146 4.146 6 C -0.142 4.142 7 C -0.113 4.113 8 H 0.103 0.897 9 C 0.019 3.981 10 N -0.325 5.325 11 C 0.193 3.807 12 N -0.303 5.303 13 C 0.009 3.991 14 C -0.263 4.263 15 C -0.165 4.165 16 O -0.376 6.376 17 Si 0.676 3.324 18 C 0.050 3.950 19 N -0.307 5.307 20 C -0.147 4.147 21 C -0.146 4.146 22 H 0.098 0.902 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.259 0.741 29 H 0.177 0.823 30 H 0.119 0.881 31 H 0.257 0.743 32 H -0.222 1.222 33 H -0.215 1.215 34 H 0.210 0.790 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.149 0.694 -1.091 5.309 hybrid contribution 0.305 0.357 0.507 0.691 sum 5.454 1.051 -0.583 5.585 Atomic orbital electron populations 1.81299 1.15300 1.10969 1.10512 1.29945 0.95719 0.91161 0.91279 1.19256 0.78535 1.04712 0.98560 0.84394 1.21531 0.96209 1.00458 0.96371 1.21443 0.93709 1.02560 0.96453 1.21424 0.92003 1.01292 0.96553 0.89703 1.21445 0.94090 0.96385 0.86149 1.44286 1.00103 1.59774 1.28297 1.19684 0.88136 0.87207 0.85707 1.67898 1.03844 1.26200 1.32360 1.22855 0.91107 0.90413 0.94709 1.21053 0.98190 1.07509 0.99587 1.24411 0.92282 1.01503 0.98317 1.86440 1.32927 1.75042 1.43180 0.94145 0.88191 0.76204 0.73910 1.23271 0.85822 0.89509 0.96357 1.68034 1.19016 1.22489 1.21191 1.21567 0.93821 1.01448 0.97831 1.21529 0.96195 1.01694 0.95221 0.90242 0.91138 0.89868 0.90337 0.91708 0.91998 0.74084 0.82262 0.88064 0.74318 1.22243 1.21473 0.78954 0.90416 0.91282 0.91052 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -5.36 18.54 20.01 0.37 -4.98 16 2 C 0.24 0.49 14.65 89.44 1.31 1.80 16 3 C 0.01 -0.08 2.57 -12.60 -0.03 -0.11 16 4 H 0.14 -1.53 8.14 -2.39 -0.02 -1.55 16 5 C -0.11 0.90 5.16 30.59 0.16 1.06 16 6 C -0.10 1.00 5.20 30.59 0.16 1.16 16 7 C -0.09 0.78 2.23 -10.79 -0.02 0.75 16 8 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 9 C 0.14 -0.46 5.04 86.38 0.44 -0.02 16 10 N -0.69 -0.49 5.43 -351.03 -1.91 -2.40 16 11 C 0.55 3.89 8.43 261.48 2.20 6.09 16 12 N -0.58 -4.91 9.59 -197.98 -1.90 -6.80 16 13 C 0.18 1.13 9.92 84.71 0.84 1.97 16 14 C -0.26 -0.88 5.40 -19.69 -0.11 -0.98 16 15 C -0.05 0.19 2.82 71.24 0.20 0.40 16 16 O -0.57 1.91 12.82 -148.98 -1.91 0.00 16 17 Si 0.77 -3.51 29.92 68.60 2.05 -1.46 16 18 C 0.22 0.87 10.99 84.71 0.93 1.80 16 19 N -0.59 -4.27 10.46 -197.99 -2.07 -6.34 16 20 C -0.11 0.94 5.08 30.59 0.16 1.09 16 21 C -0.11 0.84 5.16 30.59 0.16 0.99 16 22 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 23 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H 0.08 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.42 -0.86 7.77 -92.71 -0.72 -1.58 16 29 H 0.16 0.67 5.04 -2.91 -0.01 0.65 16 30 H 0.10 -0.86 7.96 -2.39 -0.02 -0.88 16 31 H 0.41 -5.61 8.74 -74.06 -0.65 -6.26 16 32 H -0.29 -0.88 7.06 99.48 0.70 -0.17 16 33 H -0.29 -0.31 7.11 99.48 0.71 0.39 16 34 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 35 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.07 -0.52 7.18 -2.38 -0.02 -0.54 16 37 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: 0.00 -22.64 317.86 0.78 -21.87 By element: Atomic # 1 Polarization: -15.62 SS G_CDS: -0.25 Total: -15.87 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 6.39 Total: 15.99 kcal Atomic # 7 Polarization: -15.02 SS G_CDS: -5.50 Total: -20.53 kcal Atomic # 8 Polarization: 1.91 SS G_CDS: -1.91 Total: 0.00 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.05 Total: -1.46 kcal Total: -22.64 0.78 -21.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16496580_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.346 kcal (2) G-P(sol) polarization free energy of solvation -22.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds