Wall clock time and date at job start Mon Mar 8 2021 09:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47409 * 343.52311 * 3 2 1 5 5 C 1.53006 * 109.46868 * 103.52243 * 3 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47592 * 300.00035 * 6 5 3 8 8 H 1.09000 * 109.47140 * 300.00346 * 7 6 5 9 9 C 1.53002 * 109.47092 * 180.02562 * 7 6 5 10 10 N 1.46504 * 109.47145 * 65.00161 * 9 7 6 11 11 C 1.39007 * 119.99918 * 179.97438 * 10 9 7 12 12 C 1.39098 * 119.70406 * 359.72826 * 11 10 9 13 13 C 1.38337 * 119.09384 * 179.79246 * 12 11 10 14 14 C 1.38842 * 118.50991 * 0.46993 * 13 12 11 15 15 C 1.50695 * 120.33771 * 179.72866 * 14 13 12 16 16 O 1.42901 * 109.47542 * 65.02217 * 15 14 13 17 17 Si 1.86304 * 109.47041 * 185.02316 * 15 14 13 18 18 C 1.38069 * 119.32383 * 359.75037 * 14 13 12 19 19 N 1.31940 * 120.85444 * 0.02562 * 18 14 13 20 20 C 1.52996 * 109.47165 * 60.00300 * 7 6 5 21 21 C 1.52997 * 109.47101 * 223.52126 * 3 2 1 22 22 H 1.08993 * 109.46955 * 300.00020 * 5 3 2 23 23 H 1.09000 * 109.47050 * 59.99849 * 5 3 2 24 24 H 1.09000 * 109.47160 * 60.00369 * 6 5 3 25 25 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 26 26 H 1.09005 * 109.46847 * 185.00127 * 9 7 6 27 27 H 1.08999 * 109.47369 * 304.99894 * 9 7 6 28 28 H 0.96997 * 119.99900 * 0.02562 * 10 9 7 29 29 H 1.07999 * 120.44913 * 359.97438 * 12 11 10 30 30 H 1.07998 * 120.74637 * 180.20491 * 13 12 11 31 31 H 1.08999 * 109.47078 * 305.02416 * 15 14 13 32 32 H 0.96693 * 114.00187 * 179.97438 * 16 15 14 33 33 H 1.48502 * 109.99888 * 178.67859 * 17 15 14 34 34 H 1.48492 * 110.00083 * 299.99813 * 17 15 14 35 35 H 1.07999 * 119.57060 * 179.97438 * 18 14 13 36 36 H 1.08992 * 109.47534 * 180.02562 * 20 7 6 37 37 H 1.08996 * 109.47134 * 59.99508 * 20 7 6 38 38 H 1.09000 * 109.47140 * 300.00349 * 21 3 2 39 39 H 1.09001 * 109.47230 * 59.99493 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9718 -0.9846 0.2915 5 6 3.1178 0.3382 -1.4026 6 6 4.6478 0.3395 -1.4024 7 6 5.1569 1.3860 -0.4091 8 1 4.7927 2.3711 -0.7008 9 6 6.6869 1.3876 -0.4095 10 7 7.1745 1.8270 -1.7193 11 6 8.5410 1.9097 -1.9602 12 6 9.4400 1.5792 -0.9516 13 6 10.7971 1.6618 -1.2065 14 6 11.2110 2.0832 -2.4630 15 6 12.6793 2.1940 -2.7833 16 8 13.2744 0.8954 -2.7461 17 14 12.8905 2.9255 -4.4836 18 6 10.2635 2.4000 -3.4160 19 7 8.9752 2.3075 -3.1463 20 6 4.6471 1.0485 0.9934 21 6 3.1175 1.0468 0.9933 22 1 2.7548 -0.4071 -2.1102 23 1 2.7540 1.3235 -1.6941 24 1 5.0119 -0.6456 -1.1108 25 1 5.0110 0.5804 -2.4015 26 1 7.0496 2.0687 0.3604 27 1 7.0514 0.3809 -0.2051 28 1 6.5437 2.0609 -2.4181 29 1 9.0832 1.2596 0.0164 30 1 11.5186 1.4084 -0.4438 31 1 13.1640 2.8368 -2.0484 32 1 14.2210 0.8907 -2.9436 33 1 14.3346 3.0696 -4.7987 34 1 12.2342 2.0583 -5.4947 35 1 10.5809 2.7286 -4.3946 36 1 5.0093 1.7942 1.7009 37 1 5.0111 0.0633 1.2849 38 1 2.7537 2.0321 0.7018 39 1 2.7542 0.8065 1.9925 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16496580_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:18 Heat of formation + Delta-G solvation = 25.904050 kcal Electronic energy + Delta-G solvation = -20188.553170 eV Core-core repulsion = 17097.088252 eV Total energy + Delta-G solvation = -3091.464917 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33121 -40.17836 -38.15140 -37.55820 -36.33407 -33.63937 -32.91153 -31.75639 -30.99324 -27.53615 -25.67764 -24.79250 -23.60429 -23.03245 -22.04149 -20.81101 -18.74541 -18.60103 -18.45542 -17.96945 -16.58715 -16.37280 -15.90316 -15.71173 -15.43829 -15.27815 -15.17167 -14.81494 -14.64475 -14.36216 -14.16400 -13.96861 -13.90201 -13.78152 -13.51185 -13.11803 -13.00366 -12.67980 -12.34708 -12.02591 -11.99132 -11.94722 -11.48836 -11.23777 -11.12469 -10.90753 -10.66912 -10.55494 -10.26300 -8.60302 -4.89882 0.28454 0.46781 1.35061 1.61385 1.74210 1.77097 1.97502 2.22774 2.85208 2.93178 3.50658 3.66675 3.75878 3.78234 3.82277 3.89542 4.10145 4.13543 4.16680 4.28725 4.37254 4.43951 4.48593 4.53366 4.58358 4.60583 4.78419 4.81772 4.83309 4.95643 5.04435 5.08039 5.18643 5.21521 5.29267 5.31691 5.35642 5.44998 5.57202 5.63042 6.12482 6.56951 6.61159 6.66192 7.21688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.235 3.765 3 C 0.011 3.989 4 H 0.139 0.861 5 C -0.109 4.109 6 C -0.109 4.109 7 C -0.094 4.094 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.719 5.719 11 C 0.394 3.606 12 C -0.239 4.239 13 C -0.014 4.014 14 C -0.201 4.201 15 C -0.064 4.064 16 O -0.560 6.560 17 Si 0.750 3.250 18 C 0.143 3.857 19 N -0.567 5.567 20 C -0.103 4.103 21 C -0.109 4.109 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.406 0.594 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.394 0.606 33 H -0.284 1.284 34 H -0.301 1.301 35 H 0.160 0.840 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 1.888 3.790 6.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.082 4.082 3 C -0.010 4.010 4 H 0.157 0.843 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.113 4.113 8 H 0.098 0.902 9 C 0.006 3.994 10 N -0.351 5.351 11 C 0.157 3.843 12 C -0.264 4.264 13 C -0.040 4.040 14 C -0.207 4.207 15 C -0.174 4.174 16 O -0.370 6.370 17 Si 0.656 3.344 18 C -0.014 4.014 19 N -0.285 5.285 20 C -0.141 4.141 21 C -0.147 4.147 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.242 0.758 29 H 0.172 0.828 30 H 0.165 0.835 31 H 0.114 0.886 32 H 0.244 0.756 33 H -0.210 1.210 34 H -0.229 1.229 35 H 0.177 0.823 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.443 1.752 2.726 4.058 hybrid contribution 1.373 -0.998 0.282 1.721 sum 3.816 0.754 3.009 4.917 Atomic orbital electron populations 1.81300 1.15389 1.10997 1.10600 1.30016 0.95808 0.91126 0.91228 1.19276 0.78402 1.04390 0.98975 0.84310 1.21539 0.96624 1.02799 0.93825 1.21564 0.93457 1.00097 0.99560 1.21376 0.92751 1.00333 0.96810 0.90175 1.21625 0.94278 1.00287 0.83216 1.44659 1.01684 1.72513 1.16268 1.18673 0.86725 0.89856 0.89045 1.21663 0.93080 1.10445 1.01226 1.21430 0.95632 0.91028 0.95910 1.20095 0.95009 1.09336 0.96220 1.24644 0.91800 0.88531 1.12436 1.86549 1.28958 1.28658 1.92804 0.94315 0.79344 0.87359 0.73391 1.22378 0.87086 0.93600 0.98385 1.67148 1.18035 1.22064 1.21285 1.21452 0.93322 1.04000 0.95354 1.21541 0.96748 0.97942 0.98511 0.91021 0.91375 0.90188 0.91590 0.90881 0.90904 0.75827 0.82789 0.83513 0.88616 0.75609 1.21044 1.22872 0.82313 0.89939 0.89546 0.91400 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -5.15 18.54 20.01 0.37 -4.78 16 2 C 0.23 0.34 14.65 89.44 1.31 1.65 16 3 C 0.01 -0.09 2.57 -12.60 -0.03 -0.12 16 4 H 0.14 -1.74 8.14 -2.39 -0.02 -1.76 16 5 C -0.11 0.93 5.16 30.60 0.16 1.09 16 6 C -0.11 1.12 5.08 30.59 0.16 1.28 16 7 C -0.09 1.06 2.22 -10.80 -0.02 1.03 16 8 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 9 C 0.13 -1.17 4.28 86.38 0.37 -0.80 16 10 N -0.72 2.25 5.46 -345.07 -1.88 0.37 16 11 C 0.39 1.03 7.65 133.05 1.02 2.05 16 12 C -0.24 -0.04 9.33 22.50 0.21 0.17 16 13 C -0.01 -0.02 9.83 22.44 0.22 0.20 16 14 C -0.20 -0.57 5.39 -19.76 -0.11 -0.68 16 15 C -0.06 0.05 2.81 71.23 0.20 0.25 16 16 O -0.56 -0.99 12.82 -148.98 -1.91 -2.90 16 17 Si 0.75 -1.06 29.88 68.60 2.05 0.99 16 18 C 0.14 0.67 9.84 84.64 0.83 1.50 16 19 N -0.57 -3.72 10.39 -193.26 -2.01 -5.73 16 20 C -0.10 1.33 5.20 30.58 0.16 1.49 16 21 C -0.11 1.10 5.16 30.58 0.16 1.25 16 22 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H 0.07 -0.55 7.18 -2.39 -0.02 -0.56 16 26 H 0.07 -0.72 7.92 -2.38 -0.02 -0.74 16 27 H 0.07 -0.71 7.94 -2.39 -0.02 -0.73 16 28 H 0.41 -1.37 7.78 -92.71 -0.72 -2.09 16 29 H 0.15 -0.78 6.71 -2.91 -0.02 -0.80 16 30 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 31 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.39 -2.45 8.74 -74.06 -0.65 -3.10 16 33 H -0.28 -0.65 7.11 99.48 0.71 0.06 16 34 H -0.30 -1.91 7.05 99.48 0.70 -1.21 16 35 H 0.16 0.27 4.87 -2.91 -0.01 0.25 16 36 H 0.08 -1.10 8.14 -2.39 -0.02 -1.12 16 37 H 0.09 -1.27 8.14 -2.39 -0.02 -1.29 16 38 H 0.07 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: 0.00 -20.78 320.83 0.98 -19.79 By element: Atomic # 1 Polarization: -17.83 SS G_CDS: -0.27 Total: -18.10 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.63 Total: 10.36 kcal Atomic # 7 Polarization: -6.62 SS G_CDS: -3.52 Total: -10.14 kcal Atomic # 8 Polarization: -0.99 SS G_CDS: -1.91 Total: -2.90 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.05 Total: 0.99 kcal Total: -20.78 0.98 -19.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16496580_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.699 kcal (2) G-P(sol) polarization free energy of solvation -20.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds